Complet list of 1j5l hssp file
Complete list of 1j5l.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1J5L
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER METAL BINDING PROTEIN 16-MAY-02 1J5L
COMPND MOL_ID: 1; MOLECULE: METALLOTHIONEIN-1; CHAIN: A; FRAGMENT: BETA_C DOM
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY S
AUTHOR A.MUNOZ,F.H.FORSTERLING,C.F.SHAW III,D.H.PETERING
DBREF 1J5L A 2 31 UNP P29499 MT1_HOMAM 29 58
SEQLENGTH 30
NCHAIN 1 chain(s) in 1J5L data set
NALIGN 43
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : MT1_HOMAM 1J5L 1.00 1.00 1 28 29 56 28 0 0 58 P29499 Metallothionein-1 OS=Homarus americanus PE=1 SV=2
2 : Q95P38_HOMAM 0.97 0.97 1 29 30 58 29 0 0 58 Q95P38 Metallothionein OS=Homarus americanus GN=mth PE=4 SV=1
3 : A7DY35_9EUCA 0.93 0.97 1 29 30 58 29 0 0 58 A7DY35 Metallothionein OS=Dromia personata GN=Mt PE=4 SV=1
4 : A7DY36_9EUCA 0.93 1.00 1 29 30 58 29 0 0 58 A7DY36 Metallothionein OS=Dromia personata GN=Mt PE=4 SV=1
5 : E5D8G3_PROCL 0.92 1.00 1 25 20 44 25 0 0 44 E5D8G3 Metallothionein isoform 1 (Fragment) OS=Procambarus clarkii GN=mt1 PE=2 SV=1
6 : MT_ASTAS 0.90 0.97 1 29 30 58 29 0 0 58 P55951 Metallothionein OS=Astacus astacus PE=1 SV=1
7 : Q9U623_PACLE 0.90 0.97 1 29 30 58 29 0 0 58 Q9U623 Metallothionein OS=Pacifastacus leniusculus PE=4 SV=1
8 : A7DY30_CANPG 0.86 0.97 1 29 30 58 29 0 0 58 A7DY30 Metallothionein OS=Cancer pagurus GN=Mt PE=4 SV=1
9 : A7DY32_BYTTH 0.83 0.93 1 29 30 58 29 0 0 58 A7DY32 Metallothionein OS=Bythograea thermydron GN=Mt PE=4 SV=1
10 : Q95U92_ERISI 0.83 0.93 1 29 30 58 29 0 0 58 Q95U92 Metallothionein OS=Eriocheir sinensis PE=4 SV=1
11 : Q95U93_PORPE 0.83 0.93 1 29 30 58 29 0 0 58 Q95U93 Metallothionein OS=Portunus pelagicus PE=4 SV=1
12 : MT1_SCYSE 0.80 1.00 1 30 29 58 30 0 0 58 P02805 Metallothionein-1 OS=Scylla serrata PE=1 SV=1
13 : A7DY24_BYTTH 0.79 0.93 1 29 30 58 29 0 0 58 A7DY24 Metallothionein OS=Bythograea thermydron GN=Mt PE=4 SV=1
14 : A7DY27_MAJSQ 0.79 0.93 1 29 30 58 29 0 0 58 A7DY27 Metallothionein OS=Maja squinado GN=Mt PE=4 SV=1
15 : E5KXY4_PENMO 0.79 0.93 1 29 30 58 29 0 0 58 E5KXY4 Metallothionein OS=Penaeus monodon PE=4 SV=1
16 : I3NLQ1_CHAJP 0.79 0.93 1 29 30 57 29 1 1 57 I3NLQ1 Metallothionein OS=Charybdis japonica PE=4 SV=1
17 : MT1_CALSI 1DMC 0.79 1.00 1 29 30 58 29 0 0 59 P55949 Metallothionein-1B OS=Callinectes sapidus PE=1 SV=1
18 : MT2_CALSI 0.79 0.93 1 29 30 58 29 0 0 58 P55950 Metallothionein-2B OS=Callinectes sapidus PE=1 SV=1
19 : MT_POTPO 0.79 0.86 1 29 30 58 29 0 0 58 P55952 Metallothionein OS=Potamon potamios PE=1 SV=1
20 : Q548Y2_CALSI 0.79 0.93 1 29 30 58 29 0 0 58 Q548Y2 Cadmium-inducible metallothionein CdMT-II OS=Callinectes sapidus PE=4 SV=1
21 : Q548Y3_CALSI 0.79 1.00 1 29 30 58 29 0 0 59 Q548Y3 Cadmium-inducible metallothionein CdMT-I OS=Callinectes sapidus PE=4 SV=1
22 : A7DY26_9EUCA 0.76 0.97 1 29 30 58 29 0 0 58 A7DY26 Metallothionein OS=Cyanagraea praedator GN=Mt PE=4 SV=1
23 : A7DY28_NECPU 0.76 0.93 1 29 30 58 29 0 0 58 A7DY28 Metallothionein OS=Necora puber GN=Mt PE=4 SV=1
24 : A7DY29_CARMA 0.76 0.93 1 29 32 60 29 0 0 60 A7DY29 Metallothionein OS=Carcinus maenas GN=Mt PE=4 SV=1
25 : A7DY31_PACMR 0.76 0.93 1 29 31 59 29 0 0 59 A7DY31 Metallothionein OS=Pachygrapsus marmoratus GN=Mt PE=4 SV=1
26 : A7DY33_9EUCA 0.76 0.93 1 29 30 58 29 0 0 58 A7DY33 Metallothionein OS=Cyanagraea praedator GN=Mt PE=4 SV=1
27 : D3VN23_9EUCA 0.76 0.93 1 29 30 58 29 0 0 58 D3VN23 Metallothionein OS=Gandalfus puia GN=mt PE=4 SV=1
28 : MT2_SCYSE 0.76 0.97 1 29 29 57 29 0 0 57 P02806 Metallothionein-2 OS=Scylla serrata PE=1 SV=1
29 : MT_CARMA 0.76 0.93 1 29 30 58 29 0 0 58 P55948 Metallothionein OS=Carcinus maenas PE=1 SV=1
30 : Q95U91_SCYSE 0.76 0.97 1 29 30 58 29 0 0 58 Q95U91 Metallothionein OS=Scylla serrata PE=4 SV=1
31 : T2BQT3_PORTR 0.76 0.97 1 29 30 58 29 0 0 59 T2BQT3 Metallothionein 2 OS=Portunus trituberculatus GN=MT2 PE=4 SV=1
32 : A2I5Y4_PORPE 0.72 0.90 1 29 30 58 29 0 0 59 A2I5Y4 Metallothionein OS=Portunus pelagicus GN=METAL2 PE=4 SV=1
33 : A7DY25_9EUCA 0.72 0.90 1 29 30 58 29 0 0 58 A7DY25 Metallothionein OS=Segonzacia mesatlantica GN=Mt PE=4 SV=1
34 : A7DY34_9EUCA 0.72 0.93 1 29 30 58 29 0 0 58 A7DY34 Metallothionein OS=Segonzacia mesatlantica GN=Mt PE=4 SV=1
35 : D3VN22_9EUCA 0.72 0.90 1 29 30 58 29 0 0 58 D3VN22 Metallothionein OS=Allograea tomentosa GN=mt PE=4 SV=1
36 : D3VN24_AUSRO 0.72 0.93 1 29 30 58 29 0 0 58 D3VN24 Metallothionein OS=Austinograea rodriguezensis GN=mt PE=4 SV=1
37 : E9K8X5_ERISI 0.72 1.00 1 29 31 59 29 0 0 59 E9K8X5 Metallothionein-1 OS=Eriocheir sinensis GN=MT-1 PE=4 SV=1
38 : F8UU34_9EUCA 0.72 0.86 1 29 31 59 29 0 0 59 F8UU34 Metallothionein OS=Sinopotamon honanense GN=Mt PE=4 SV=1
39 : Q86M28_CARMA 0.72 0.90 1 29 30 58 29 0 0 58 Q86M28 Metallothionein Ib OS=Carcinus maenas GN=MTIb PE=4 SV=1
40 : Q58NQ8_PALPU 0.69 0.79 1 29 34 62 29 0 0 62 Q58NQ8 Cadmium metallothionein 1 OS=Palaemonetes pugio PE=4 SV=1
41 : C6ZGE4_MACRS 0.66 0.79 1 29 34 62 29 0 0 62 C6ZGE4 Metallothionein I OS=Macrobrachium rosenbergii PE=4 SV=1
42 : Q7YW25_PANAR 0.62 0.86 1 29 31 59 29 0 0 59 Q7YW25 Metallothionein OS=Panulirus argus PE=4 SV=1
43 : Q4UH31_THEAN 0.52 0.56 2 28 832 858 27 0 0 978 Q4UH31 Integral membrane protein, putative OS=Theileria annulata GN=TA20630 PE=4 SV=1
## ALIGNMENTS 1 - 43
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 A P 0 0 78 43 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
2 3 A C >> - 0 0 40 44 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 4 A E G >4 S+ 0 0 164 44 39 EEEEDDDDEEEEEPEEQDEDQEEEAEEEEETTEEEEQEEEEDC
4 5 A K G 34 S+ 0 0 147 44 6 KKKKKKKKKKKKKKKKKKKKKKKKKKKQKQKKKKKKKKKKKKK
5 6 A C G <4 + 0 0 3 44 12 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCK
6 7 A T S << S+ 0 0 102 44 52 TTTTTTTTTSSSTSTSTSTSTSSSTSSSSSSSSSSSSKSTTTE
7 8 A S S S- 0 0 121 44 25 SSSSSSSSSSSSSSTSSSSSSSSSTSSSSSSSSSSSGSSPPTS
8 9 A G - 0 0 57 44 35 GGGGGGGGGGGGGTGGGEEEGGGGEGEGGGGGEEEDGEGEEAG
9 10 A C - 0 0 31 44 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 11 A K + 0 0 195 44 41 KKKKKKKKKKKKKKSKKKEKKKKKKKKKKKKNKKKEKKKAACE
11 12 A C - 0 0 13 44 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12 13 A P - 0 0 82 43 69 PPSSPPPTTGGATAP.ATKTASTTSTSATAAASSSSSSTKKSQ
13 14 A S S S- 0 0 86 44 60 SSSSSSSNNSSNNSSTTSSSTNTTNNSNTNNNSNNSNTTSSTI
14 15 A K S >S+ 0 0 141 44 19 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKAAKK
15 16 A D T 5S+ 0 0 122 44 15 DDDDEEEDDEEEDEEEEEEEEEEEDEEEEEEEEEEEEEEDDED
16 17 A E T >5S+ 0 0 100 44 21 EEEEEEEEEDDEEEDDEEEEEEDDEEEDDDEEEEEEDEDEDES
17 18 A C H >>5S+ 0 0 10 44 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 19 A A H 345S+ 0 0 40 44 64 AAVAAAASTCCSTSACSSASSPCCPSSRCRSNSSSSAACAAAC
19 20 A K H 34 - 0 0 12 44 5 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCCC
26 27 A S T 3 S+ 0 0 102 43 58 SKST ERSSSSSTSKSSSSSSTSSSTTSSSSSTTSTSSSKKKL
27 28 A C T 3 S+ 0 0 46 43 0 CCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 29 A C S < S- 0 0 12 43 0 CCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
29 30 A P 0 0 76 41 0 PPP PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
30 31 A T 0 0 139 2 0 T
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 2 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 43 0 0 0.000 0 1.00
2 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
3 4 A 0 0 0 0 0 0 0 0 2 2 0 5 2 0 0 0 7 66 0 16 44 0 0 1.149 38 0.61
4 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 5 0 0 0 44 0 0 0.185 6 0.93
5 6 A 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 2 0 0 0 0 44 0 0 0.108 3 0.87
6 7 A 0 0 0 0 0 0 0 0 0 0 52 43 0 0 0 2 0 2 0 0 44 0 0 0.874 29 0.48
7 8 A 0 0 0 0 0 0 0 2 0 5 86 7 0 0 0 0 0 0 0 0 44 0 0 0.536 17 0.75
8 9 A 0 0 0 0 0 0 0 68 2 0 0 2 0 0 0 0 0 25 0 2 44 0 0 0.866 28 0.64
9 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
10 11 A 0 0 0 0 0 0 0 0 5 0 2 0 2 0 0 82 0 7 2 0 44 0 0 0.746 24 0.58
11 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 1 0 0.000 0 1.00
12 13 A 0 0 0 0 0 0 0 5 19 16 28 23 0 0 0 7 2 0 0 0 43 0 0 1.720 57 0.30
13 14 A 0 0 2 0 0 0 0 0 0 0 45 20 0 0 0 0 0 0 32 0 44 0 0 1.133 37 0.39
14 15 A 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 93 0 0 0 0 44 0 0 0.249 8 0.81
15 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 0 27 44 0 0 0.586 19 0.84
16 17 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 70 0 27 44 0 0 0.687 22 0.79
17 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
18 19 A 2 0 0 0 0 0 0 0 32 5 32 5 18 0 5 0 0 0 2 0 44 0 0 1.632 54 0.35
19 20 A 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 95 0 0 0 0 44 0 0 0.216 7 0.82
20 21 A 0 0 0 0 0 0 0 0 0 0 0 84 2 0 0 2 0 0 11 0 44 0 0 0.565 18 0.65
21 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
22 23 A 0 0 2 0 0 0 0 0 5 2 41 34 0 0 0 16 0 0 0 0 44 0 0 1.337 44 0.36
23 24 A 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 95 0 0 0 0 44 0 0 0.185 6 0.92
24 25 A 0 0 0 0 0 0 0 0 7 89 0 0 0 0 2 2 0 0 0 0 44 0 0 0.462 15 0.77
25 26 A 0 0 0 0 0 0 0 0 0 0 0 0 98 0 2 0 0 0 0 0 44 0 0 0.108 3 0.95
26 27 A 0 2 0 0 0 0 0 0 0 0 63 19 0 0 2 12 0 2 0 0 43 0 0 1.118 37 0.41
27 28 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 43 0 0 0.000 0 1.00
28 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 43 0 0 0.000 0 1.00
29 30 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
30 31 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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