Complet list of 1j57 hssp file
Complete list of 1j57.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1J57
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER PROTEIN BINDING 17-JAN-02 1J57
COMPND MOL_ID: 1; MOLECULE: NUIA; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: NOSTOC SP.; ORGANISM_TAXID: 103690; ST
AUTHOR T.W.KIRBY,G.A.MUELLER,E.F.DEROSE,M.S.LEBETKIN,G.MEISS,A.PINGOUD, R.E.L
DBREF 1J57 A 10 143 UNP Q44296 Q44296_9NOST 2 135
SEQLENGTH 143
NCHAIN 1 chain(s) in 1J57 data set
NALIGN 34
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q3M1T9_ANAVT 1.00 1.00 11 143 3 135 133 0 0 135 Q3M1T9 Nuclease A inhibitor-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_B0337 PE=4 SV=1
2 : Q44296_9NOST1KTU 1.00 1.00 10 143 2 135 134 0 0 135 Q44296 Nuclease inhibitor OS=Anabaena sp. GN=nuiA PE=4 SV=1
3 : Q7A260_NOSS12O3B 1.00 1.00 10 143 2 135 134 0 0 135 Q7A260 Sugar-non-specific nuclease inhibitor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nuiA PE=1 SV=1
4 : Q8YKA3_NOSS1 0.64 0.80 10 143 2 134 134 1 1 134 Q8YKA3 All8013 protein OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all8013 PE=4 SV=1
5 : K9PMF2_9CYAN 0.59 0.76 13 143 3 134 132 1 1 134 K9PMF2 Nuclease A inhibitor family protein OS=Calothrix sp. PCC 7507 GN=Cal7507_3567 PE=4 SV=1
6 : B2JAU9_NOSP7 0.54 0.76 14 143 3 133 131 1 1 133 B2JAU9 Nuclease A inhibitor family protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_AF194 PE=4 SV=1
7 : K9R1J2_NOSS7 0.53 0.77 14 143 3 133 131 1 1 133 K9R1J2 Nuclease A inhibitor-like protein OS=Nostoc sp. (strain ATCC 29411 / PCC 7524) GN=Nos7524_5616 PE=4 SV=1
8 : Q8YKN1_NOSS1 0.51 0.74 14 143 3 133 131 1 1 133 Q8YKN1 All7262 protein OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all7262 PE=4 SV=1
9 : K9QL25_9NOSO 0.50 0.76 15 143 4 133 130 1 1 133 K9QL25 Nuclease A inhibitor family protein OS=Nostoc sp. PCC 7107 GN=Nos7107_5356 PE=4 SV=1
10 : K9X477_9NOST 0.49 0.73 14 143 3 132 130 0 0 132 K9X477 Nuclease A inhibitor-like protein OS=Cylindrospermum stagnale PCC 7417 GN=Cylst_5229 PE=4 SV=1
11 : K9ZCA8_ANACC 0.49 0.73 14 143 3 131 130 1 1 131 K9ZCA8 Nuclease A inhibitor family protein OS=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) GN=Anacy_1337 PE=4 SV=1
12 : B2J211_NOSP7 0.48 0.73 14 143 5 132 130 2 2 132 B2J211 Nuclease A inhibitor family protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_R5060 PE=4 SV=1
13 : Q3M5Y0_ANAVT 0.48 0.73 14 143 3 133 131 1 1 133 Q3M5Y0 Sugar-non-specific nuclease inhibitor NuiA-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_4001 PE=4 SV=1
14 : K9XVS1_STAC7 0.47 0.76 13 143 3 132 131 1 1 132 K9XVS1 Nuclease A inhibitor family protein OS=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) GN=Sta7437_3182 PE=4 SV=1
15 : K9RE55_9CYAN 0.46 0.70 15 143 7 136 130 1 1 136 K9RE55 Nuclease A inhibitor-like protein OS=Rivularia sp. PCC 7116 GN=Riv7116_3304 PE=4 SV=1
16 : K9X8C8_9NOST 0.45 0.73 14 143 3 133 131 1 1 133 K9X8C8 Nuclease A inhibitor-like protein OS=Cylindrospermum stagnale PCC 7417 GN=Cylst_6550 PE=4 SV=1
17 : B4VMX5_9CYAN 0.44 0.72 17 143 4 129 127 1 1 129 B4VMX5 Putative uncharacterized protein OS=Coleofasciculus chthonoplastes PCC 7420 GN=MC7420_1964 PE=4 SV=1
18 : Q7NI84_GLOVI 0.41 0.62 20 143 19 140 124 1 2 140 Q7NI84 Gll2299 protein OS=Gloeobacter violaceus (strain PCC 7421) GN=gll2299 PE=4 SV=1
19 : A1ZZA8_9BACT 0.39 0.65 9 143 2 135 135 1 1 135 A1ZZA8 Uncharacterized protein OS=Microscilla marina ATCC 23134 GN=M23134_03646 PE=4 SV=1
20 : K9TR80_9CYAN 0.38 0.64 16 143 5 129 128 2 3 129 K9TR80 Nuclease A inhibitor-like protein OS=Oscillatoria acuminata PCC 6304 GN=Oscil6304_5860 PE=4 SV=1
21 : K9UBH8_9CHRO 0.38 0.61 12 143 2 131 132 1 2 131 K9UBH8 Nuclease A inhibitor-like protein OS=Chamaesiphon minutus PCC 6605 GN=Cha6605_0717 PE=4 SV=1
22 : D4TJW9_9NOST 0.36 0.61 7 143 11 142 137 2 5 142 D4TJW9 Sugar-non-specific nuclease inhibitor NuiA-like protein OS=Cylindrospermopsis raciborskii CS-505 GN=CRC_02661 PE=4 SV=1
23 : E0ULD9_CYAP2 0.36 0.72 19 143 24 148 125 0 0 148 E0ULD9 Nuclease A inhibitor family protein OS=Cyanothece sp. (strain PCC 7822) GN=Cyan7822_5915 PE=4 SV=1
24 : U5QNL6_9CYAN 0.36 0.62 8 143 2 135 136 1 2 135 U5QNL6 Sugar-non-specific nuclease inhibitor NuiA OS=Gloeobacter kilaueensis JS1 GN=GKIL_3019 PE=4 SV=1
25 : U9VVH0_9CYAN 0.36 0.64 12 143 3 132 132 1 2 132 U9VVH0 Nuclease a inhibitor-like protein OS=Leptolyngbya sp. Heron Island J GN=N836_15295 PE=4 SV=1
26 : A9B470_HERA2 0.35 0.68 5 143 15 146 139 1 7 146 A9B470 Nuclease A inhibitor family protein OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=Haur_4973 PE=4 SV=1
27 : J0LA29_9BACT 0.35 0.58 16 143 6 134 129 1 1 134 J0LA29 Sugar-non-specific nuclease inhibitor NuiA-like protein OS=Pontibacter sp. BAB1700 GN=O71_21097 PE=4 SV=1
28 : D4TQY6_9NOST 0.34 0.60 11 134 12 131 124 1 4 139 D4TQY6 Sugar-non-specific nuclease inhibitor NuiA-like protein OS=Raphidiopsis brookii D9 GN=CRD_01548 PE=4 SV=1
29 : A9FPQ3_SORC5 0.33 0.57 12 143 2 131 132 1 2 131 A9FPQ3 Putative sugar-non-specific nuclease inhibitor NuiA homolog OS=Sorangium cellulosum (strain So ce56) GN=nuiA PE=4 SV=1
30 : K9TQY9_9CYAN 0.32 0.64 13 143 5 134 132 2 3 144 K9TQY9 Nuclease A inhibitor-like protein OS=Oscillatoria acuminata PCC 6304 GN=Oscil6304_5496 PE=4 SV=1
31 : D2QEI5_SPILD 0.31 0.54 2 143 4 146 143 1 1 146 D2QEI5 Nuclease A inhibitor family protein OS=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) GN=Slin_2215 PE=4 SV=1
32 : H1Y3M7_9SPHI 0.31 0.60 23 143 19 135 121 2 4 135 H1Y3M7 Nuclease A inhibitor family protein OS=Mucilaginibacter paludis DSM 18603 GN=Mucpa_6233 PE=4 SV=1
33 : I2GHN5_9BACT 0.31 0.54 11 143 2 135 134 1 1 135 I2GHN5 Sugar-non-specific nuclease inhibitor OS=Fibrisoma limi BUZ 3 GN=nuiA PE=4 SV=1
34 : S4XPJ2_SORCE 0.30 0.58 7 143 2 137 138 2 3 137 S4XPJ2 Uncharacterized protein OS=Sorangium cellulosum So0157-2 GN=SCE1572_11655 PE=4 SV=1
## ALIGNMENTS 1 - 34
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 245 1 0
2 2 A H - 0 0 143 2 73 E
3 3 A H - 0 0 132 2 66 N
4 4 A H > - 0 0 152 2 113 S
5 5 A H T 3 S+ 0 0 186 3 68 R K
6 6 A H T > + 0 0 142 3 91 R S
7 7 A H T < + 0 0 157 5 75 Q K S Q
8 8 A G T 3 S+ 0 0 53 6 61 A S Q G A
9 9 A S < + 0 0 72 7 76 A I E G D D
10 10 A T + 0 0 79 10 75 TTT T N E V V S
11 11 A K + 0 0 38 13 67 KKKK D K Q S K S DA
12 12 A T S >> S- 0 0 48 16 72 TTTT E TM STV MS K TS
13 13 A N H 3> S+ 0 0 53 19 71 NNNNN D Q TS ATA SPNN HP
14 14 A S H 3> S+ 0 0 77 27 73 SSSSTNNN TNGNS T E AK DQE KETT PE
15 15 A E H <> S+ 0 0 53 29 58 EEEEEEEEQETEKEDE N AS DDT SEPR SE
16 16 A I H X S+ 0 0 0 31 39 IIIIIIIIVIIIILIV LIIL PLSIVLLF LL
17 17 A L H X S+ 0 0 84 32 66 LLLLLTVTTIIVTIPVI LTIT AIVEILTI EL
18 18 A E H X S+ 0 0 99 32 48 EEEEDEEEEQDEEDKQD KEDD APETDAEE DA
19 19 A Q H X>S+ 0 0 13 33 75 QQQQQKKKNKQKKHKKQ TELLKLEKELSQS QS
20 20 A L H <5S+ 0 0 0 34 11 LLLLLLLLLLLLLLILLLLLLLLLLILLLLV VL
21 21 A K H <5S+ 0 0 64 34 58 KKKKKKKKKEKKKKKEKEDAKKSQETKKAAS TG
22 22 A Q H <5S+ 0 0 159 34 60 QQQRQQQQQQKEQQSQKRRNQQKEAAEQEET PE
23 23 A A T >X5S+ 0 0 28 35 47 AAAAAAAATAAAAALASAALVTAAAAATALLALA
24 24 A S T 34 S- 0 0 64 32 52 TTTTTTTTTTTTTDNTTNTTM.TDC.D.STSDTS
51 51 A H T 3 S+ 0 0 92 32 80 HHHPPANNNPTQNSTPSPAPT.KSP.E.PIVDVP
52 52 A E T >> + 0 0 58 34 67 EEEETQQQEAPEQSKAAENEPNDAK.ENAESNSA
53 53 A I H <> S+ 0 0 40 34 80 IIIKKKKKKKKKKKNKLQKNTELQV.TEAQQLQA
54 54 A V H 3> S+ 0 0 0 34 46 VVVVVLLLLLIILLLLVLVLATILD.VTLLIIIL
55 55 A L H X4>S+ 0 0 0 35 48 LLLLLLLLLLLLILLLLLLLLTALSFLTLLKLKR
56 56 A Q H 3<5S+ 0 0 64 35 72 QQQQEQQEQEQQQQQEKETEFIQKLSKIAKDKDA
57 57 A Q H 3<5S+ 0 0 104 35 82 QQQQQLLLLLLLLRKLRNLQSQKRLPLQALWLWA
58 58 A T T <<5S- 0 0 50 35 63 TTTTTTTTTTKTTTTTATASKQATKEAEETLAQE
59 59 A G T 5S- 0 0 24 35 65 GGGNGGGGSGNGGGNGGGNNLKNGNAAKGYMGMG
60 60 A H >>< - 0 0 73 35 76 HHHHHHHHHHHSHHHHYHELATIHYLMTLHLKVL
61 61 A G T 34 S+ 0 0 4 34 54 GGGPSPSPPPP.SDSSPPAPNGSAPAPGGPPPPA
62 62 A Q T 34 S+ 0 0 66 35 78 QQQIAQPPLQQQQLLQPPPSPIETDNAIAPPAPA
63 63 A D T <4 S+ 0 0 136 35 48 DDDDGDEEEDDNDSDDDDDDDIGGDGDIANSGDE
64 64 A A S < S- 0 0 26 35 66 AAATTSTTTASLTTAATMATAGTMTQYGTTVTVT
65 65 A P S S+ 0 0 49 35 64 PPPPPPSSPPPPSKPPPAILANPRPPPNPPNLFP
66 66 A F S S- 0 0 47 35 31 FFFVVIVVIVIVVVVVIVVIIVCVIIFVVVVVVV
67 67 A K - 0 0 119 35 56 KKKEKEEEEEEEEEKEESKKERSRVQEREQEEEE
68 68 A V - 0 0 33 35 73 VVVIAETTLTEVEVVIVAETTTEKTTETVTEKEV
69 69 A V - 0 0 28 35 42 VVVVVVVVVVVVVKIVQLLVIVVLVILVTLITIT
70 70 A D >> - 0 0 53 35 63 DDDGAEDDDDEEEEDDTDKTSTAASSETTTETPT
71 71 A I H >5S+ 0 0 1 35 43 IIIVVLLLLVLLLLMILLLILIFLLLLVAIELEL
72 72 A D H 45S+ 0 0 64 35 37 DDDDDEDDDDEDDAEDDDDETDDRDEGDGHADED
73 73 A S H >>5S+ 0 0 57 35 88 SSSDDYYYYYYYYQKYQAARDDDEDQYDDEDYQD
74 74 A F H 3<5S+ 0 0 2 35 4 FFFFFFFLFFFLLFFFFFFFLFFFFFFFFFFLFF
75 75 A F T 3< S+ 0 0 33 35 76 SSSGKRRRRRRRRQQRAAKAAQNSGGRRAAERQA
77 77 A R T < S+ 0 0 126 35 76 RRRVVNNNNNNNNPRNPPNPPGLSQNNGPPPNPP
78 78 A A T 4 S- 0 0 3 35 67 AAAAACCCSCCCCAACAASAVVDAAAMVVAVMVV
79 79 A T T 4 S+ 0 0 33 35 67 TTTTVAAAAAAAATTATCVLLTACTTTTILITVL
80 80 A T < - 0 0 56 35 87 TTTTTFVVEVFFLEAVTRARTKPRVTHKDETNTD
81 81 A P - 0 0 20 35 60 PPPPGEEEEEEEEAEEEEEEVQDEEVAQVGEPEP
82 82 A Q S S- 0 0 105 35 65 QQQEEQKKKKKQKQKKEAEQEEPERQREPLQAQP
83 83 A D S S+ 0 0 135 35 45 DDDDDEEEEEEEEDDEDDSSNDDDAEPDGGDSDA
84 84 A W + 0 0 177 35 44 WWWWWWWWWWWWWWWWWWWWWWWWWWDWDSWGWE
85 85 A Y S S- 0 0 93 35 64 YYYHHHHHHHHHHYYHHQYHYYYYFHAYAFYSYA
86 86 A E > - 0 0 80 35 53 EEENGNDDNSNNDNDNNEDNEEGGDGGEGsEVDG
87 87 A D T 4 S+ 0 0 127 34 53 DDDEEEEDEQEDEASEEPAEDEEPSEEKDlA.DE
88 88 A E T > S+ 0 0 111 34 77 EEEEELVIIPILIQEQARKEAEEERAEEALE.TA
89 89 A E H >>S+ 0 0 57 35 43 EEEEEQQQQQQQQEELEQEEEEEEEEGEADESEA
90 90 A N H X5S+ 0 0 73 35 73 NNNFRKKKKKKKRLRKKRTRLRKQLKMQLQKPKQ
91 91 A A H >5S+ 0 0 64 35 61 AAAEQSQQQEEQQAEEAAKAANQQTAQNAADEAA
92 92 A V H X5S+ 0 0 68 35 84 VVVTTDNDDTEDNEIQQTVTQLETLTQIELRIRD
93 93 A V H >X5S+ 0 0 10 35 57 VVVVVVVVVVVVVCAVVAARVAAAVVAAAITATA
94 94 A A H 3XS+ 0 0 5 35 64 LLLVVVVVLVLIVVVVELVFLVMVRVEVVYKSRA
101 101 A E I <>S+ 0 0 13 35 66 EEEQQETTKEQQKNEDQGENHLKQDEKLDNQTQE
102 102 A V I <5S+ 0 0 74 35 73 VVVTTSTKTVSTTLTTTTTFAVITLVKVLYVALL
103 103 A I I <5S+ 0 0 80 35 16 IIILLLLLLLLLLLLILLLLILMILLLLLLLLLL
104 104 A K I <5S+ 0 0 48 35 47 KKKKKKKKKKKKKQKKSKKNEKKEEKHKETEKEE
105 105 A S I