Complet list of 1j0t hssp file
Complete list of 1j0t.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1J0T
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER HORMONE/GROWTH FACTOR 22-NOV-02 1J0T
COMPND MOL_ID: 1; MOLECULE: MOLT-INHIBITING HORMONE; CHAIN: A; SYNONYM: MIH;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MARSUPENAEUS JAPONICUS; ORGANISM_TAXID
AUTHOR H.KATAYAMA,K.NAGATA,T.OHIRA,F.YUMOTO,M.TANOKURA,H.NAGASAWA
DBREF 1J0T A 0 77 UNP P55847 MIH_PENJP 28 105
SEQLENGTH 78
NCHAIN 1 chain(s) in 1J0T data set
NALIGN 60
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : MIH_PENJP 1J0T 1.00 1.00 1 78 28 105 78 0 0 105 P55847 Molt-inhibiting hormone OS=Penaeus japonicus PE=1 SV=2
2 : M5AAV1_PENSE 0.96 0.99 1 78 28 105 78 0 0 105 M5AAV1 Molt-inhibiting hormone OS=Penaeus semisulcatus GN=MIH PE=4 SV=1
3 : Q6RJQ8_PENMO 0.96 0.99 1 78 28 105 78 0 0 105 Q6RJQ8 Molt-inhibiting hormone 1 OS=Penaeus monodon GN=MIH1 PE=4 SV=1
4 : Q6TAW6_LITVA 0.96 0.99 1 78 28 105 78 0 0 105 Q6TAW6 Liv-MIH1 (Precursor) OS=Litopenaeus vannamei PE=4 SV=1
5 : Q8WSI0_FENCH 0.96 0.99 1 76 28 103 76 0 0 103 Q8WSI0 Putative molt-inhibiting hormone OS=Fenneropenaeus chinensis GN=MIH PE=4 SV=2
6 : MIH_METEN 0.87 0.99 1 77 28 104 77 0 0 105 O76534 Probable molt-inhibiting hormone OS=Metapenaeus ensis PE=2 SV=1
7 : Q95NM2_PENMO 0.83 0.95 1 76 27 102 76 0 0 102 Q95NM2 Neuropeptide Pem-SGP-C2 (Precursor) OS=Penaeus monodon GN=Pem-SGP-C2 PE=4 SV=1
8 : Q95P14_PENMO 0.83 0.95 1 76 28 103 76 0 0 103 Q95P14 Neuropeptide Pem-SGP-C1 (Precursor) OS=Penaeus monodon GN=Pem-SGP-C1 PE=4 SV=1
9 : Q95YM4_PENMO 0.83 0.95 1 76 28 103 76 0 0 103 Q95YM4 Neuropeptide Pem-SGP-C1 (Precursor) OS=Penaeus monodon GN=Pem-SGP-C1 PE=4 SV=1
10 : Q6RJQ7_PENMO 0.82 0.95 1 76 22 97 76 0 0 97 Q6RJQ7 Molt-inhibiting hormone 2 OS=Penaeus monodon GN=MIH2 PE=4 SV=1
11 : Q8WTF0_METEN 0.80 0.93 7 77 29 99 71 0 0 102 Q8WTF0 Gonad-inhibiting hormone OS=Metapenaeus ensis GN=GIH PE=4 SV=1
12 : Q8WSI1_LITST 0.75 0.92 6 76 1 71 71 0 0 71 Q8WSI1 Putative molt-inhibiting hormone (Fragment) OS=Litopenaeus stylirostris GN=MIH PE=2 SV=1
13 : Q2MGW1_PENJP 0.73 0.92 1 78 23 100 78 0 0 102 Q2MGW1 Molt-inhibiting hormone C OS=Penaeus japonicus GN=MIH-C PE=4 SV=1
14 : Q6TAW5_LITVA 0.72 0.83 1 76 28 103 76 0 0 103 Q6TAW5 Liv-MIH2 (Precursor) OS=Litopenaeus vannamei PE=4 SV=2
15 : Q8WSH9_9EUCA 0.72 0.90 6 76 1 71 71 0 0 71 Q8WSH9 Putative molt-inhibiting hormone (Fragment) OS=Trachypenaeus curvirostris GN=MIH PE=2 SV=1
16 : A7IYP5_PENMO 0.71 0.90 1 78 17 94 78 0 0 96 A7IYP5 Gonad-inhibiting hormone OS=Penaeus monodon GN=GIH PE=4 SV=1
17 : D0EXU9_PENMO 0.71 0.90 1 78 17 94 78 0 0 96 D0EXU9 Gonad-inhibiting hormone OS=Penaeus monodon GN=GIH PE=4 SV=1
18 : G9JKB1_PENMO 0.71 0.90 1 78 17 94 78 0 0 96 G9JKB1 Gonad inhibiting hormone (Precursor) OS=Penaeus monodon GN=GIH PE=4 SV=1
19 : Q8WSI2_ERISI 0.70 0.89 6 76 1 71 71 0 0 71 Q8WSI2 Putative molt-inhibiting hormone (Fragment) OS=Eriocheir sinensis GN=MIH PE=2 SV=1
20 : C7DZC0_PENMO 0.69 0.90 1 78 17 94 78 0 0 96 C7DZC0 Gonad inhibiting hormone OS=Penaeus monodon GN=GIH PE=4 SV=1
21 : Q68Y92_PENJP 0.69 0.94 1 78 23 100 78 0 0 102 Q68Y92 Molt inhibiting hormone B OS=Penaeus japonicus PE=4 SV=1
22 : U5LMV5_LITVA 0.69 0.88 1 78 17 94 78 0 0 96 U5LMV5 Gonad-inhibiting hormone OS=Litopenaeus vannamei GN=VIH PE=4 SV=1
23 : G0YP38_MACNP 0.53 0.81 1 78 32 109 78 0 0 110 G0YP38 Prepro-gonad-inhibiting hormone isoform A OS=Macrobrachium nipponense GN=GIH-A PE=4 SV=1
24 : Q95P84_NEPNO 0.53 0.79 3 78 36 111 76 0 0 112 Q95P84 Prepro-gonad-inhibiting hormone (Precursor) OS=Nephrops norvegicus PE=4 SV=2
25 : C7AE77_9EUCA 0.52 0.78 6 78 40 112 73 0 0 113 C7AE77 Vitellogenesis-inhibiting hormone OS=Rimicaris kairei GN=VIH PE=4 SV=1
26 : GIH_HOMAM 0.51 0.78 3 78 36 111 76 0 0 112 P55320 Gonad-inhibiting hormone OS=Homarus americanus PE=1 SV=1
27 : MIH_PROCL 0.51 0.70 6 76 5 75 71 0 0 75 P55848 Molt-inhibiting hormone OS=Procambarus clarkii PE=1 SV=1
28 : Q3HXZ4_HOMGA 0.51 0.78 3 78 36 111 76 0 0 112 Q3HXZ4 Vitellogenesis inhibiting hormone OS=Homarus gammarus PE=4 SV=1
29 : Q8WRN6_MACRS 0.51 0.81 1 78 41 118 78 0 0 119 Q8WRN6 Molt inhibiting hormone-like protein OS=Macrobrachium rosenbergii PE=4 SV=1
30 : A0SJB1_GECLA 0.49 0.73 1 77 35 111 77 0 0 113 A0SJB1 Molt-inhibiting hormone (Precursor) OS=Gecarcinus lateralis PE=4 SV=1
31 : G0YP39_MACNP 0.49 0.73 1 78 34 111 78 0 0 112 G0YP39 Prepro-gonad-inhibiting hormone isoform B OS=Macrobrachium nipponense GN=GIH-B PE=4 SV=1
32 : MIH_CANPG 0.49 0.78 3 78 2 77 76 0 0 78 P55846 Molt-inhibiting hormone OS=Cancer pagurus PE=1 SV=1
33 : MIH_ORCLI 0.49 0.71 1 78 29 106 78 0 0 106 P83636 Molt-inhibiting hormone OS=Orconectes limosus PE=1 SV=2
34 : Q8WRN5_MACRS 0.49 0.77 1 78 34 111 78 0 0 112 Q8WRN5 Sinus gland peptide B OS=Macrobrachium rosenbergii PE=4 SV=1
35 : Q9GYE8_CANPG 0.49 0.77 1 78 35 112 78 0 0 113 Q9GYE8 Moult-inhibiting hormone (Precursor) OS=Cancer pagurus GN=mih PE=4 SV=1
36 : A2I5X8_PORPE 0.48 0.84 12 78 1 67 67 0 0 68 A2I5X8 Molt-inhibiting hormone OS=Portunus pelagicus GN=MIH PE=4 SV=1
37 : Q6W6P3_ERISI 0.48 0.74 10 75 1 66 66 0 0 67 Q6W6P3 Molt-inhibiting hormone 1 (Fragment) OS=Eriocheir sinensis GN=MIH1 PE=2 SV=1
38 : MIH_CHAFE 0.47 0.81 1 78 35 112 78 0 0 113 O96605 Molt-inhibiting hormone OS=Charybdis feriatus GN=MIH PE=3 SV=1
39 : MIH_METMG 0.47 0.77 1 78 35 112 78 0 0 113 O61389 Molt-inhibiting hormone OS=Metacarcinus magister PE=3 SV=1
40 : Q5VKS2_ERISI 0.47 0.73 1 75 35 109 75 0 0 110 Q5VKS2 Molt-inhibiting hormone OS=Eriocheir sinensis GN=MIH1 PE=4 SV=1
41 : B2ZFL9_CHAJP 0.46 0.81 1 78 35 112 78 0 0 113 B2ZFL9 Molt-inhibiting hormone OS=Charybdis japonica GN=MIH PE=4 SV=1
42 : MIH_CARMA 0.46 0.74 1 78 35 112 78 0 0 113 Q27225 Molt-inhibiting hormone OS=Carcinus maenas GN=MIH PE=1 SV=1
43 : MIH_JASLA 0.46 0.71 8 76 6 74 69 0 0 74 P83220 Probable molt-inhibiting hormone OS=Jasus lalandii PE=1 SV=1
44 : MOIH1_CANPG 0.46 0.66 4 77 3 76 74 0 0 78 P81034 Mandibular organ-inhibiting hormone 1 OS=Cancer pagurus PE=1 SV=1
45 : MOIH2_CANPG 0.46 0.66 4 77 3 76 74 0 0 78 P81035 Mandibular organ-inhibiting hormone 2 OS=Cancer pagurus PE=1 SV=1
46 : B0Z833_PORTR 0.45 0.78 1 78 35 112 78 0 0 113 B0Z833 Molt-inhibiting hormone OS=Portunus trituberculatus GN=MIH PE=4 SV=1
47 : G3GCD0_9EUCA 0.45 0.74 1 77 35 111 77 0 0 113 G3GCD0 Moult inhibiting hormone XO preproprotein (Precursor) OS=Discoplax celeste GN=MIH PE=4 SV=1
48 : H9ZJK1_SCYPA 0.45 0.77 1 78 35 112 78 0 0 113 H9ZJK1 Molt-inhibiting hormone 1 OS=Scylla paramamosain GN=MIH2 PE=4 SV=2
49 : H9ZJK2_SCYPA 0.45 0.77 1 78 35 112 78 0 0 113 H9ZJK2 Molt-inhibiting hormone OS=Scylla paramamosain GN=MIH PE=4 SV=1
50 : Q8T4J5_SCYSE 0.45 0.77 1 78 26 103 78 0 0 104 Q8T4J5 Molt-inhibiting hormone (Precursor) OS=Scylla serrata GN=MIH PE=2 SV=1
51 : Q9U5Y5_CANPG 0.45 0.64 1 78 34 111 78 0 0 112 Q9U5Y5 Mandibular organ-inhibiting hormone 2 (Precursor) OS=Cancer pagurus GN=moih2 PE=4 SV=1
52 : Q9U5Y6_CANPG 0.45 0.64 1 78 34 111 78 0 0 112 Q9U5Y6 Mandibular organ-inhibiting hormone 1 (Precursor) OS=Cancer pagurus GN=moih1 PE=4 SV=1
53 : H9XUF0_SCYPA 0.44 0.76 1 78 35 112 78 0 0 113 H9XUF0 MIH OS=Scylla paramamosain PE=4 SV=1
54 : MIH_CALSI 0.44 0.79 1 78 35 112 78 0 0 113 P55321 Molt-inhibiting hormone OS=Callinectes sapidus PE=3 SV=1
55 : V9ZBG5_SCYPA 0.43 0.66 1 76 22 97 76 0 0 125 V9ZBG5 Vitellogenesis-inhibiting hormone-like protein OS=Scylla paramamosain PE=2 SV=1
56 : D0EZP2_CHEQU 0.42 0.65 4 77 32 105 74 0 0 107 D0EZP2 Molt-inhibiting hormone OS=Cherax quadricarinatus PE=4 SV=1
57 : VIH_ARMVU 0.40 0.62 8 75 15 82 68 0 0 83 P83627 Vitellogenesis-inhibiting hormone OS=Armadillidium vulgare PE=1 SV=1
58 : K7J5S5_NASVI 0.37 0.65 18 77 55 114 60 0 0 118 K7J5S5 Uncharacterized protein OS=Nasonia vitripennis PE=4 SV=1
59 : E9GW63_DAPPU 0.36 0.66 2 65 15 77 64 1 1 93 E9GW63 Crustacean hyperglycemic hormone-like peptide OS=Daphnia pulex GN=DAPPUDRAFT_55390 PE=4 SV=1
60 : CHHA_CHEDE 0.34 0.60 3 67 2 65 65 1 1 72 P83485 Crustacean hyperglycemic hormone A OS=Cherax destructor PE=1 SV=1
## ALIGNMENTS 1 - 60
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 0 A A 0 0 141 41 5 AAAAAAAAAG AA AAA AAAA AAA AAA AAAAA AGAAAAAAAA
2 1 A S + 0 0 32 42 71 SSSSSSSSSS SS NNN NNNR RAR RRR RRGRR RGRRRRRRRR S
3 2 A F + 0 0 196 47 60 FFFFFYLLLL IP III IIIYF F FYVFVYFV VVIVV VIVVVRRVVM FV
4 3 A I S S- 0 0 74 50 43 IIIIIITTTM LI LLL LLLLT T TLILIVLI FIIFI IIIIIIIIIIIIL FF
5 4 A D S S- 0 0 94 50 45 DDDDDEEDDD DD DDD DYDDN N NDNDNFDN NNNNN NNNNNNNNNNNDT DD
6 5 A N S S+ 0 0 103 55 57 NGGGGNGGGG NSGNSSSNSSSDDTDEDDDDDEDD DDADD NNDDDDDNNDDDD IQ
7 6 A T + 0 0 41 56 62 TTTTTTTTTTTTNTTKKKTKSNEEEEEEEEEDEED DDEDE DDDEDDDDDDDED NA
8 7 A a + 0 0 26 58 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCC CC
9 8 A R S S+ 0 0 134 58 60 RRRRRRRRRRTRRPRRRRSRRRPPPPPPPPRPPRP PPPPPPQQPPPPPQQPPPPL KK
10 9 A G S >> S+ 0 0 8 59 42 GGGGGGGGGGGGGGAGGGAGGGGGGGGGGNGNGGN NNNNNNGNNNNNNNNNNNNGG GG
11 10 A V T 34 S+ 0 0 49 58 64 VVVVVVRRRRAVARVAAAVAVAVVVVVVVVVLVVL LLLMLLMFFLLLLLFFLLLAV L.
12 11 A M T 34 S+ 0 0 130 60 34 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMIMIMMIMIMIIMIMIIMIIIIIIIIIML YV
13 12 A G T <4 S+ 0 0 48 60 9 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG DY
14 13 A N < + 0 0 17 60 8 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNNNNNNNNNNNN KD
15 14 A R S S+ 0 0 166 60 4 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR SR
16 15 A D S > S+ 0 0 120 59 32 DDDDDDEEEEDDDEDDDDDDDDDDDDADDDDDADDDDDDDDDYAADDDDDAADDDHD .A
17 16 A I H > S+ 0 0 11 60 29 IIIIIIIIIIIMIIMMMMMMIMLLLLVLLILLLLLLILLILLLMMLILLLMMLLLIL II
18 17 A Y H >>S+ 0 0 78 61 10 YYYYYYYYYYYYYYYYYYYYYYYYYYHYYFYYHYYYYYYYYYYYYYYYYYYYYYYHYFFF
19 18 A K H >5S+ 0 0 130 61 62 KKKKKKKKKNNRTKRNNNRNSREEEEGEEKEKGEKKKKKKKKEEEKRKKKEEKKETDAAK
20 19 A K H X5S+ 0 0 36 61 24 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKYKKYKKKKRKKKQKKKKKKKKKKKKMDRRK
21 20 A V H >X5S+ 0 0 0 61 8 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVLLL
22 21 A V H 3X5S+ 0 0 34 61 62 VVVVVVDDDDSEEDEEEEEEEEVAVATAVDVETVEEDEEDEEEDDEDEEEDDEEDLSDDD
23 22 A R H 3XX S+ 0 0 48 61 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
28 27 A c H 3X>S+ 0 0 0 61 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
29 28 A T I 3X>S+ 0 0 19 61 75 TTTTTTAAAVATTVTTTTTTTTSASAYASAESYESAAASAASYAAAAAAAAAAAAYQYYY
30 29 A N I <<5S+ 0 0 84 61 3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSN
31 30 A I I <5S+ 0 0 82 61 15 IIIIIIIIIIIILIIIIIIILIIIIIVIIIIIVLIIIIIIIILIIIIIIIIIIIIVVLLL
32 31 A F I <5S- 0 0 123 61 4 FFFFFFFFFFYYYFYYYYYYYYFFFFFFFFFFFFFYFFFFYFYFFYFYYYFFYYFLFFYY
33 32 A R I << + 0 0 200 61 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
34 33 A L >< - 0 0 84 61 83 LLLLLLLLLLLLLLLLLLLLLLMIENDNMIKNDKNIIINIIKEKQSVIIIQKISKDDEEK
35 34 A P H > S+ 0 0 112 61 68 PPPPPPPPPPPPPPPPPPPPPPNNNNTNNDSTTSTTDPTDPTEDDTDTTTDDTTIPKPPP
36 35 A G H 4 S+ 0 0 54 61 55 GGGGGGGGGGGQQEQQQQQQQQDDDDDDDGNGDNGGGGGGGGKGGGGGGGGGGGRENQEY
37 36 A L H > S+ 0 0 15 61 23 LLLLLLLLLLLLLLLLLLLLLLMVVVVVMLVMVVMMLMMLMMILLMLMMMLLMMMIVLLV
38 37 A D H X S+ 0 0 55 61 71 DDDDDDEEEEDDDEDDDDDDDDGGGGLGGAGALGAAGAAGAAALLAAAAALLAAGEEHHA
39 38 A G H < S+ 0 0 28 61 71 GGGGGGGGGGGGGGGGGGGGGGTVTVAVTTPTASTSMSTMSSVNNSASSSNNSSYVSTTV
40 39 A M H >4 S+ 0 0 48 61 66 MMMMMMLLLLMLLLLLLLLLLLRKRMGMRLKLGRLLLILLILNNNLLLLLNNLLRDKLLS
41 40 A b H 3< S+ 0 0 1 61 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
42 41 A R T 3< S+ 0 0 61 61 8 RRRRRRRRRRRRRRRRRRRKRRRKRKRKRRKRRKRRRRRRRRRRRRRRRRRRRRRRRRRR
43 42 A N S < S+ 0 0 34 61 61 NDDDDDDDDDNNNDNNNNNNNNKKKKKKKKKKKKKKKKKKKRESSKKKKKSSKKRSSKKG
44 43 A R S > S- 0 0 50 61 68 RRRRRRRRRRRRRERRRRRRRRDDEDGDDNNNGNNDNDNNDNNNNDNDDDNNDDNGDNNN
45 44 A a T 3 S- 0 0 1 61 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
46 45 A F T 3 S+ 0 0 6 61 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFY
47 46 A Y < + 0 0 125 61 80 YYYYYNYYYYNNNINNNNNNNNYHFHSHYRYFSYFFRFFRFFLYYFMFFFYYFFYTSTTN
48 47 A N S S- 0 0 46 61 24 NNNNNNNNNNNNNNNNNNNNNNNNNTSTNNNNSNNNNNNNNNNNNNNNNNNNNNNSTSTN
49 48 A E S >> S+ 0 0 108 61 72 EEEEEEEEEEFQQDQQQQQQQQVMVMEMVIMEEEEEIEEIEESTTEFEEETTEEEDSDNL
50 49 A W H 3> + 0 0 65 61 111 WWWWWWWWWWWWWWWWWWWWWWDDDDMDDDDDMDDDDDDDDDWEEDDDDDEEDDETYYYV
51 50 A F H 3> S+ 0 0 6 61 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
52 51 A L H <> S+ 0 0 44 61 41 LLLLLLLLLLMLLLLLLLLLLLLLLLKLLLMLKMLLLLLLLVTLLLLLLLLLLLTKEKKR
53 52 A I H X S+ 0 0 33 61 83 IIIIIVLLLLIMLFMMMMMMLMWWWWLWWWWWLWWWWWWWWWVWWWWWWWWWWWWSTGGQ
54 53 A c H < S+ 0 0 2 61 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCC
55 54 A L H < S+ 0 0 1 61 32 LLLLLLLLLLLLLALLLLLLLLVVVVLVVVVVLVVVVVVVVVLIIVVVVVIIVVILILLL
56 55 A K H >< S+ 0 0 94 61 90 KKKKKKKKKKRHKKHHHHHHNHYYYYLYYYHYLRYRYRYYRHQDDRSSSSDDSRSEMDDE
57 56 A A T 3< S+ 0 0 32 61 30 AAAAAAAAAAASAASSSSSSSSAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAVAE
58 57 A A T 3 S- 0 0 25 61 68 AAAAAAAAAAAATAAAAAAAAATTTTMTTSTTMTTTSTTSTTTTTTSIIITTITTILLLL
59 58 A N S < S+ 0 0 140 61 60 NNNNNNNNNNKKEKKKKKKKKKEEEEEEEEEEEEEEEEEEEEMEEEEEEEEEEEEEDLLF
60 59 A R + 0 0 112 61 36 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRNNRRRRRNNRRNRLLIL
61 60 A E + 0 0 83 61 77 EEEEEDEEEEEEQMEEEEEEEEHHHHVHHQTTVTTSHTTHTSETTSLSSSTTSSTGAQNG
62 61 A D S > S+ 0 0 121 61 57 DDDDDDDDDDDADDAAAAAADAGGGGEGGADEEDEEAEEAEEHRREAEEERREEEDEDDN
63 62 A E T 3> S+ 0 0 82 61 25 EEEEEEEEEEEEEEEEEEEEEEDEDEEEDEEEEEEDQEEQEEENNDEEEENNEDHEKEEG
64 63 A I H 3> S+ 0 0 17 61 61 IIIIILIIIIILLILLLLLLLLVIVIFIVKLMFLMMKMMKMLTKKMKMMMKKMLKFIMKF
65 64 A E H <> S+ 0 0 163 61 63 EEEEEDEEEEDDEEDEEEDENGEDEDPDDDESPESTDMSDMRPEEMDTTTEETAKFSEDN
66 65 A K H > S+ 0 0 71 60 60 KKKKNKNNNNKHNNHHAHHHNHQQQQDQQEHQDHQQDQQDQDRQQQEQQQQQQQEDDW E
67 66 A F H X S+ 0 0 13 60 16 FFFFFFFFFFFFFFFFFFFFFFLFLFFFLLLLFLLLLLLLLLFLLLLLLLLLLLLFYI Y
68 67 A R H X S+ 0 0 180 59 61 RKKKRKRRRRRRRRRRRRRRRRNRNRKRNTNRKNRKTKRTKEDEEKTKKKEEKKMMKQ
69 68 A V H X S+ 0 0 84 59 88 VVVVVVVVVVVLLVLLLLLLLLRKRKRKRRRQRRQQRQQRQEIQQQRQQQQQQQQRLT
70 69 A W H >X S+ 0 0 71 59 23 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWYAWWAWWYWWYWWWWWWFWWWWWWWWRHS
71 70 A I H 3< S+ 0 0 8 59 41 IIIIIIIVVIIIIIIIIIIIIIMIMVIVMVMVIMVVVVVVVVRAAVVVVVAAVVVVAI
72 71 A S H >< S+ 0 0 69 59 56 SSSSSSSSSSSSSSRSSSRSSSSSSSGSSSSGGSGRSRGSRGSAARTRRMAARTAGSK
73 72 A I H X< S+ 0 0 79 59 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIQ
74 73 A L T 3< S+ 0 0 1 59 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLILLLLLLLLLLLLLLLLLLLLLLLL
75 74 A N T < S+ 0 0 19 59 68 NNNNNNNNNNNNNNNNNNNNNNRRRRNRRRRGNRGGGGGGGGKGGGRGGGGGGGRNKH
76 75 A A S < S+ 0 0 75 56 20 AAAAAPAAAAPPAAPAAAPAAAAAAAAAAAVAAVAA AA AAAAAAAAAAAAAAAA G
77 76 A G 0 0 61 44 3 GGGG G G G GGG GGGGGGG GGGGGGGGG GG GG GGGGGGGGGGG G A
78 77 A Q 0 0 124 36 22 QQQQ R RRR RRRRRRR RR RRRRRR RR RR R RRRWWRR
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 0 A 0 0 0 0 0 0 0 5 95 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.195 6 0.95
2 1 A 0 0 0 0 0 0 0 5 2 0 33 0 0 0 45 0 0 0 14 0 42 0 0 1.237 41 0.28
3 2 A 30 9 19 2 26 0 9 0 0 2 0 0 0 0 4 0 0 0 0 0 47 0 0 1.743 58 0.40
4 3 A 2 24 52 2 8 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 50 0 0 1.296 43 0.57
5 4 A 0 0 0 0 2 0 2 0 0 0 0 2 0 0 0 0 0 4 44 46 50 0 0 1.082 36 0.54
6 5 A 0 0 2 0 0 0 0 16 2 0 13 2 0 0 0 0 2 4 18 42 55 0 0 1.645 54 0.43
7 6 A 0 0 0 0 0 0 0 0 2 0 2 29 0 0 0 7 0 27 5 29 56 0 0 1.558 51 0.37
8 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 58 0 0 0.000 0 1.00
9 8 A 0 2 0 0 0 0 0 0 0 47 2 2 0 0 38 3 7 0 0 0 58 0 0 1.234 41 0.40
10 9 A 0 0 0 0 0 0 0 61 3 0 0 0 0 0 0 0 0 0 36 0 59 1 0 0.784 26 0.58
11 10 A 40 28 0 3 7 0 0 0 14 0 0 0 0 0 9 0 0 0 0 0 58 0 0 1.507 50 0.36
12 11 A 2 2 30 65 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 60 0 0 0.846 28 0.65
13 12 A 0 0 0 0 0 0 2 97 0 0 0 0 0 0 0 0 0 0 0 2 60 0 0 0.169 5 0.90
14 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 95 2 60 0 0 0.253 8 0.91
15 14 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 98 0 0 0 0 0 60 1 0 0.085 2 0.96
16 15 A 0 0 0 0 0 0 2 0 12 0 0 0 0 2 0 0 0 8 0 76 59 0 0 0.807 26 0.68
17 16 A 2 42 37 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60 0 0 1.123 37 0.71
18 17 A 0 0 0 0 7 0 89 0 0 0 0 0 0 5 0 0 0 0 0 0 61 0 0 0.435 14 0.90
19 18 A 0 0 0 0 0 0 0 3 3 0 2 3 0 0 8 46 0 23 10 2 61 0 0 1.599 53 0.38
20 19 A 0 0 0 2 0 0 3 0 0 0 0 0 0 0 5 87 2 0 0 2 61 0 0 0.585 19 0.75
21 20 A 93 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.242 8 0.92
22 21 A 20 2 0 0 0 0 0 0 5 0 3 3 0 0 0 0 0 39 0 28 61 0 0 1.483 49 0.37
23 22 A 0 0 0 0 0 41 0 0 0 0 2 0 0 0 56 0 2 0 0 0 61 0 0 0.826 27 0.90
24 23 A 56 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.687 22 0.84
25 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
26 25 A 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 8 2 52 7 28 61 0 0 1.280 42 0.62
27 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 61 0 0 0.000 0 1.00
28 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
29 28 A 3 0 0 0 0 0 11 0 41 0 11 28 0 0 0 0 2 3 0 0 61 0 0 1.510 50 0.25
30 29 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 61 0 0 0.084 2 0.96
31 30 A 7 11 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.590 19 0.85
32 31 A 0 2 0 0 62 0 36 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.730 24 0.95
33 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 61 0 0 0.000 0 1.00
34 33 A 2 38 18 3 0 0 0 0 0 0 3 0 0 0 0 11 3 7 8 7 61 0 0 1.891 63 0.16
35 34 A 0 0 2 0 0 0 0 0 0 48 3 21 0 0 0 2 0 2 10 13 61 0 0 1.492 49 0.31
36 35 A 0 0 0 0 0 0 2 54 0 0 0 0 0 0 2 2 18 5 5 13 61 0 0 1.406 46 0.44
37 36 A 16 54 3 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 1.092 36 0.77
38 37 A 0 10 0 0 0 0 0 18 28 0 0 0 0 3 0 0 0 11 0 30 61 0 0 1.614 53 0.29
39 38 A 10 0 0 3 0 0 2 38 5 2 20 15 0 0 0 0 0 0 7 0 61 0 0 1.772 59 0.29
40 39 A 0 52 3 16 0 0 0 3 0 0 2 0 0 0 8 5 0 0 8 2 61 0 0 1.552 51 0.34
41 40 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
42 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90 10 0 0 0 0 61 0 0 0.321 10 0.91
43 42 A 0 0 0 0 0 0 0 2 0 0 10 0 0 0 3 46 0 2 21 16 61 0 0 1.458 48 0.39
44 43 A 0 0 0 0 0 0 0 5 0 0 0 0 0 0 36 0 0 3 31 25 61 0 0 1.336 44 0.32
45 44 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
46 45 A 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.084 2 1.00
47 46 A 0 2 2 2 23 0 31 0 0 0 5 5 0 5 5 0 0 0 21 0 61 0 0 1.825 60 0.19
48 47 A 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 87 0 61 0 0 0.479 16 0.76
49 48 A 5 2 5 7 3 0 0 0 0 0 3 7 0 0 0 0 16 46 2 5 61 0 0 1.815 60 0.27
50 49 A 2 0 0 3 0 39 5 0 0 0 0 2 0 0 0 0 0 8 0 41 61 0 0 1.333 44 -0.11
51 50 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
52 51 A 2 79 0 5 0 0 0 0 0 0 0 3 0 0 2 8 0 2 0 0 61 0 0 0.856 28 0.59
53 52 A 3 13 11 13 2 49 0 3 0 0 2 2 0 0 0 0 2 0 0 0 61 0 0 1.624 54 0.17
54 53 A 0 0 0 0 0 0 0 2 0 0 0 0 98 0 0 0 0 0 0 0 61 0 0 0.084 2 0.97
55 54 A 41 48 10 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 61 0 0 1.015 33 0.67
56 55 A 0 3 0 2 0 0 20 0 0 0 10 0 0 16 11 21 2 3 2 10 61 0 0 2.077 69 0.09
57 56 A 2 2 0 0 0 0 0 0 80 0 15 0 0 0 0 0 0 2 0 0 61 0 0 0.660 22 0.69
58 57 A 0 7 8 3 0 0 0 0 36 0 7 39 0 0 0 0 0 0 0 0 61 0 0 1.409 47 0.31
59 58 A 0 3 0 2 2 0 0 0 0 0 0 0 0 0 0 18 0 56 18 2 61 0 0 1.258 41 0.39
60 59 A 0 5 2 0 0 0 0 0 0 0 0 0 0 0 85 0 0 0 8 0 61 0 0 0.557 18 0.64
61 60 A 3 2 0 2 0 0 0 3 2 0 13 20 0 13 0 0 5 34 2 2 61 0 0 1.929 64 0.22
62 61 A 0 0 0 0 0 0 0 10 20 0 0 0 0 2 7 0 0 28 2 33 61 0 0 1.583 52 0.43
63 62 A 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 2 3 75 7 10 61 0 0 0.934 31 0.74
64 63 A 5 25 26 20 7 0 0 0 0 0 0 2 0 0 0 16 0 0 0 0 61 0 0 1.706 56 0.39
65 64 A 0 0 0 5 2 0 0 2 2 5 7 8 0 0 2 2 0 41 3 23 61 0 0 1.832 61 0.37
66 65 A 0 0 0 0 0 2 0 0 2 0 0 0 0 15 2 12 37 7 13 12 60 0 0 1.808 60 0.39
67 66 A 0 45 2 0 50 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 60 0 0 0.888 29 0.83
68 67 A 0 0 0 3 0 0 0 0 0 0 0 7 0 0 42 27 2 8 8 2 59 0 0 1.571 52 0.38
69 68 A 22 19 2 0 0 0 0 0 0 0 0 2 0 0 20 5 29 2 0 0 59 0 0 1.688 56 0.12
70 69 A 0 0 0 0 2 85 5 0 3 0 2 0 0 2 2 0 0 0 0 0 59 0 0 0.683 22 0.77
71 70 A 39 0 42 8 0 0 0 0 8 0 0 0 0 0 2 0 0 0 0 0 59 0 0 1.219 40 0.58
72 71 A 0 0 0 2 0 0 0 12 8 0 58 3 0 0 15 2 0 0 0 0 59 0 0 1.319 44 0.43
73 72 A 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 59 0 0 0.086 2 0.94
74 73 A 0 97 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59 0 0 0.148 4 0.96
75 74 A 0 0 0 0 0 0 0 32 0 0 0 0 0 2 19 3 0 0 44 0 59 0 0 1.223 40 0.31
76 75 A 4 0 0 0 0 0 0 2 86 9 0 0 0 0 0 0 0 0 0 0 56 0 0 0.539 17 0.80
77 76 A 0 0 0 0 0 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.108 3 0.96
78 77 A 0 0 0 0 0 6 0 0 0 0 0 0 0 0 81 0 14 0 0 0 36 0 0 0.609 20 0.77
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//