Complet list of 1ixt hssp file
Complete list of 1ixt.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1IXT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER TOXIN 04-JUL-02 1IXT
COMPND MOL_ID: 1; MOLECULE: SPASMODIC PROTEIN TX9A-LIKE PROTEIN; CHAIN: A; FR
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY S
AUTHOR L.A.MILES,C.Y.DY,J.NIELSEN,K.J.BARNHAM,M.G.HINDS, B.M.OLIVERA,G.BULAJ,
DBREF 1IXT A 1 27 UNP Q9GU57 CX9A_CONGL 61 87
SEQLENGTH 27
NCHAIN 1 chain(s) in 1IXT data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CP91_CONGL 1IXT 1.00 1.00 1 27 61 87 27 0 0 88 Q9GU57 Conotoxin Gm9.1 OS=Conus gloriamaris PE=1 SV=1
2 : W4VSK8_CONVC 0.96 1.00 1 27 61 87 27 0 0 88 W4VSK8 P_Vc9.2 prepropeptide OS=Conus victoriae PE=4 SV=1
3 : CP9A_CONTE 0.89 0.93 1 27 61 87 27 0 0 88 Q9GU58 Spasmodic peptide tx9a OS=Conus textile PE=1 SV=1
4 : S4UJS6_CONTE 0.89 0.93 1 27 61 87 27 0 0 88 S4UJS6 P superfamily conotoxin Tx9a OS=Conus textile PE=4 SV=1
5 : W4VS39_CONVC 0.54 0.83 1 24 61 84 24 0 0 87 W4VS39 P_Vc9.1 prepropeptide OS=Conus victoriae PE=4 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 169 6 71 SSGGT
2 2 A a + 0 0 25 6 0 CCCCC
3 3 A N + 0 0 142 6 50 NNNNH
4 4 A N B -aB 22 23A 74 6 55 NNNNK
5 5 A S - 0 0 93 6 55 SSSSP
6 6 A b - 0 0 34 6 0 CCCCC
7 7 A Q S S- 0 0 181 6 0 QQQQQ
8 8 A S S S- 0 0 69 6 92 SNEER
9 9 A H S S+ 0 0 118 6 0 HHHHH
10 10 A S S S+ 0 0 114 6 0 SSSSS
11 11 A D + 0 0 70 6 25 DDDDE
12 12 A c S S- 0 0 22 6 0 CCCCC
13 13 A A S S- 0 0 72 6 42 AAEEA
14 14 A S S S+ 0 0 97 6 0 SSSSS
15 15 A H S S+ 0 0 136 6 0 HHHHH
16 16 A a E -C 25 0A 7 6 0 CCCCC
17 17 A I E -C 24 0A 57 6 0 IIIII
18 18 A b E +C 23 0A 47 6 0 CCCCC
19 19 A T E > -C 22 0A 47 6 81 TTTTL
20 20 A F T 3 S+ 0 0 189 6 40 FFFFI
21 21 A R T 3 S- 0 0 151 6 76 RRRRD
22 22 A G E < S+aC 4 19A 16 6 55 GGGGT
23 23 A c E S+BC 4 18A 0 6 0 CCCCC
24 24 A G E - C 0 17A 4 6 40 GGGGD
25 25 A A E - C 0 16A 35 5 0 AAAA
26 26 A V 0 0 113 5 0 VVVV
27 27 A N 0 0 155 5 0 NNNN
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 33 0 0 50 17 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.28
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 83 0 6 0 0 0.451 15 0.49
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 83 0 6 0 0 0.451 15 0.44
5 5 A 0 0 0 0 0 0 0 0 0 17 83 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.44
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 33 0 0 0 17 0 0 33 17 0 6 0 0 1.330 44 0.08
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 6 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 83 6 0 0 0.451 15 0.75
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 33 0 0 6 0 0 0.637 21 0.57
14 14 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 6 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 17 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
19 19 A 0 17 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.19
20 20 A 0 0 17 0 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.59
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 0 0 0 17 6 0 0 0.451 15 0.24
22 22 A 0 0 0 0 0 0 0 83 0 0 0 17 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.44
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 0 0 17 6 0 0 0.451 15 0.59
25 25 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
26 26 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 5 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//