Complet list of 1iwf hssp file
Complete list of 1iwf.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1IWF
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER HYDROLASE 06-MAY-02 1IWF
COMPND MOL_ID: 1; MOLECULE: GASTRIC H/K-ATPASE; CHAIN: A; FRAGMENT: N-TERMINA
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS SYNTHESIZED
AUTHOR N.FUJITANI,M.KANAGAWA,T.AIZAWA,T.OHKUBO,S.KAYA,M.DEMURA, K.KAWANO,K.TA
DBREF 1IWF A 1 34 UNP P19156 ATP4A_PIG 0 33
SEQLENGTH 34
NCHAIN 1 chain(s) in 1IWF data set
NALIGN 41
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : ATP4A_PIG 1.00 1.00 1 34 1 34 34 0 0 1034 P19156 Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A PE=1 SV=3
2 : F1RM59_PIG 1.00 1.00 1 34 1 34 34 0 0 869 F1RM59 Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A PE=3 SV=2
3 : F7GQ55_CALJA 0.91 0.94 1 34 1 34 34 0 0 1029 F7GQ55 Uncharacterized protein OS=Callithrix jacchus GN=ATP4A PE=3 SV=1
4 : I3M9Q4_SPETR 0.91 0.94 1 34 1 34 34 0 0 948 I3M9Q4 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=ATP4A PE=3 SV=1
5 : ATP4A_CANFA 0.88 0.97 1 34 1 34 34 0 0 1034 P50996 Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris GN=ATP4A PE=2 SV=3
6 : F1PRH6_CANFA 0.88 0.97 1 34 1 34 34 0 0 1034 F1PRH6 Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris GN=ATP4A PE=3 SV=1
7 : F7AFJ4_HORSE 0.88 0.91 1 33 1 33 33 0 0 962 F7AFJ4 Uncharacterized protein OS=Equus caballus GN=ATP4A PE=4 SV=1
8 : G1L0V6_AILME 0.88 0.97 1 34 1 34 34 0 0 1035 G1L0V6 Uncharacterized protein OS=Ailuropoda melanoleuca GN=ATP4A PE=3 SV=1
9 : G3HPT4_CRIGR 0.88 0.94 1 34 1 34 34 0 0 1014 G3HPT4 Potassium-transporting ATPase alpha chain 1 OS=Cricetulus griseus GN=I79_012804 PE=3 SV=1
10 : H0XXA0_OTOGA 0.88 0.91 1 34 1 34 34 0 0 1034 H0XXA0 Uncharacterized protein OS=Otolemur garnettii GN=ATP4A PE=3 SV=1
11 : H9H5D3_MACMU 0.88 0.94 1 34 1 34 34 0 0 140 H9H5D3 Uncharacterized protein OS=Macaca mulatta GN=ATP4A PE=4 SV=1
12 : M3W5T3_FELCA 0.88 0.94 1 33 1 33 33 0 0 1033 M3W5T3 Uncharacterized protein OS=Felis catus GN=ATP4A PE=3 SV=1
13 : M3Y4N0_MUSPF 0.88 0.97 1 33 1 33 33 0 0 978 M3Y4N0 Uncharacterized protein OS=Mustela putorius furo GN=ATP4A PE=3 SV=1
14 : Q63252_RAT 0.88 0.91 1 34 1 34 34 0 0 71 Q63252 H+,K+-ATPase alpha subunit (Fragment) OS=Rattus norvegicus GN=HKA PE=4 SV=1
15 : W5P471_SHEEP 0.88 0.94 1 34 1 34 34 0 0 1027 W5P471 Uncharacterized protein OS=Ovis aries GN=ATP4A PE=4 SV=1
16 : ATP4A_RAT 0.87 0.90 5 34 4 33 30 0 0 1033 P09626 Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus GN=Atp4a PE=2 SV=3
17 : F7GV44_CALJA 0.87 0.90 4 34 4 34 31 0 0 1034 F7GV44 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=ATP4A PE=3 SV=1
18 : G1L0W5_AILME 0.87 0.97 5 34 1 30 30 0 0 1037 G1L0W5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=ATP4A PE=3 SV=1
19 : L5LUY8_MYODS 0.87 0.90 5 34 23 52 30 0 0 1052 L5LUY8 Potassium-transporting ATPase alpha chain 1 OS=Myotis davidii GN=MDA_GLEAN10008228 PE=3 SV=1
20 : ATP4A_HUMAN 0.85 0.91 1 34 1 34 34 0 0 1035 P20648 Potassium-transporting ATPase alpha chain 1 OS=Homo sapiens GN=ATP4A PE=2 SV=5
21 : E9QNX7_MOUSE 0.85 0.94 1 34 1 34 34 0 0 1034 E9QNX7 Potassium-transporting ATPase alpha chain 1 OS=Mus musculus GN=Atp4a PE=2 SV=1
22 : G1PUI7_MYOLU 0.85 0.91 1 34 1 34 34 0 0 1033 G1PUI7 Uncharacterized protein OS=Myotis lucifugus GN=ATP4A PE=3 SV=1
23 : G1RKB8_NOMLE 0.85 0.91 1 34 1 34 34 0 0 1000 G1RKB8 Uncharacterized protein OS=Nomascus leucogenys GN=ATP4A PE=3 SV=1
24 : G7PX98_MACFA 0.85 0.91 1 34 1 34 34 0 0 1035 G7PX98 Potassium-transporting ATPase alpha chain 1 OS=Macaca fascicularis GN=EGM_09596 PE=3 SV=1
25 : H2NYG8_PONAB 0.85 0.91 1 34 1 34 34 0 0 952 H2NYG8 Uncharacterized protein OS=Pongo abelii GN=ATP4A PE=3 SV=1
26 : H2QG32_PANTR 0.85 0.91 1 34 1 34 34 0 0 902 H2QG32 Uncharacterized protein OS=Pan troglodytes GN=ATP4A PE=3 SV=1
27 : Q53FM3_HUMAN 0.85 0.91 1 34 1 34 34 0 0 1035 Q53FM3 ATPase, H+/K+ exchanging, alpha polypeptide variant (Fragment) OS=Homo sapiens PE=2 SV=1
28 : Q64600_RAT 0.85 0.91 1 34 1 34 34 0 0 139 Q64600 H,K-ATPase catalytic subunit (Fragment) OS=Rattus norvegicus GN=Atp4a PE=4 SV=1
29 : Q91WH7_MOUSE 0.85 0.94 1 34 1 34 34 0 0 1025 Q91WH7 ATPase, H+/K+ exchanging, gastric, alpha polypeptide OS=Mus musculus GN=Atp4a PE=2 SV=1
30 : J9P483_CANFA 0.84 0.94 4 34 35 65 31 0 0 1065 J9P483 Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris GN=ATP4A PE=3 SV=1
31 : F1LRK1_RAT 0.83 0.90 5 34 4 33 30 0 0 1033 F1LRK1 Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus GN=Atp4a PE=3 SV=1
32 : S7P5C3_MYOBR 0.83 0.90 5 34 176 205 30 0 0 1205 S7P5C3 Potassium-transporting ATPase alpha chain 1 OS=Myotis brandtii GN=D623_10035164 PE=3 SV=1
33 : ATP4A_RABIT 0.82 0.91 1 34 1 34 34 0 0 1035 P27112 Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus cuniculus GN=ATP4A PE=2 SV=3
34 : G1U418_RABIT 0.82 0.91 1 34 1 34 34 0 0 1035 G1U418 Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus cuniculus GN=ATP4A PE=3 SV=1
35 : G7NM56_MACMU 0.82 0.88 1 34 1 34 34 0 0 1035 G7NM56 Potassium-transporting ATPase alpha chain 1 OS=Macaca mulatta GN=EGK_10484 PE=3 SV=1
36 : L8HV65_9CETA 0.81 0.87 4 34 2 32 31 0 0 1032 L8HV65 Potassium-transporting ATPase alpha chain 1 (Fragment) OS=Bos mutus GN=M91_17380 PE=3 SV=1
37 : ATP4A_MOUSE 0.80 0.93 5 34 4 33 30 0 0 1033 Q64436 Potassium-transporting ATPase alpha chain 1 OS=Mus musculus GN=Atp4a PE=1 SV=3
38 : G5BXI2_HETGA 0.79 0.86 7 34 29 56 28 0 0 1056 G5BXI2 Potassium-transporting ATPase alpha chain 1 OS=Heterocephalus glaber GN=GW7_18365 PE=3 SV=1
39 : H0V573_CAVPO 0.64 0.85 1 33 1 33 33 0 0 1034 H0V573 Uncharacterized protein OS=Cavia porcellus GN=ATP4A PE=3 SV=1
40 : G3W285_SARHA 0.63 0.80 1 34 1 35 35 1 1 1008 G3W285 Uncharacterized protein OS=Sarcophilus harrisii GN=ATP4A PE=3 SV=1
41 : F6SUY0_MONDO 0.58 0.74 5 34 2 32 31 1 1 1024 F6SUY0 Uncharacterized protein (Fragment) OS=Monodelphis domestica GN=ATP4A PE=3 SV=1
## ALIGNMENTS 1 - 41
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 228 31 0 MMMMMMMMMMMMMMM MMMMMMMMMM MMM MM
2 2 A G + 0 0 82 31 0 GGGGGGGGGGGGGGG GGGGGGGGGG GGG GG
3 3 A K S S- 0 0 189 31 0 KKKKKKKKKKKKKKK KKKKKKKKKK KKK KK
4 4 A A - 0 0 79 34 33 AAAAAAVAAAAAAAA Q AAAAAAAAAAQ AADQ AT
5 5 A E - 0 0 186 41 9 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEE EDD
6 6 A N - 0 0 92 41 12 NNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNKNNNNK NNN
7 7 A Y S S+ 0 0 175 42 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
8 8 A E S S+ 0 0 130 42 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 9 A L S S+ 0 0 102 42 5 LLLLMMLMLLLMMLLLLMLLLLLLLLLLLMLLLLLLLLLMM
10 10 A Y S S+ 0 0 145 42 10 YYYYYYYYYYYYYYHYYYYYYYYYYYYYYYYYYYYHYYYYY
11 11 A Q + 0 0 131 42 28 QQSSSSSSSSSSSSQSSSSSSSSSSSSSSSSSSSSQSSSSS
12 12 A V S S- 0 0 104 42 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
13 13 A E S S- 0 0 175 42 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
14 14 A L + 0 0 112 42 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
15 15 A G S S- 0 0 17 42 5 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGgd
16 16 A P + 0 0 128 42 48 PPPPPPPPSPPPPTPTPPPPSPPPPPPTSPTPPPPPSTSnk
17 17 A G + 0 0 30 42 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
18 18 A P + 0 0 117 42 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
19 19 A S S S- 0 0 115 42 17 SSGGGGGGGGGGGGGGGGDGGDGGGGGGGGGDGGGGGGGGG
20 20 A G S S- 0 0 64 42 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
21 21 A D - 0 0 159 42 6 DDDDDDDDDDDDDDDDDDDDDDDDDDDNDDNDDDDDDEDDD
22 22 A M + 0 0 71 42 13 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMKKMM
23 23 A A + 0 0 57 42 36 AAAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAVTATEE
24 24 A A - 0 0 76 42 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
25 25 A K S S+ 0 0 167 42 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
26 26 A M S S+ 0 0 171 42 9 MMMMMMMMMMMMMMMMMMLMMLMMMMMMMMMLMMMMMMMIL
27 27 A S + 0 0 73 42 30 SSSSSSSSSKSSSSSSSSSSSSSSSSSSSSSSSSSSSSAQQ
28 28 A K + 0 0 158 42 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKK
29 29 A K + 0 0 190 42 8 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKK
30 30 A K S S- 0 0 178 42 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKK
31 31 A A + 0 0 84 42 51 AAAAAAAAAAAAAAAAAAAKAAKKKKKAAAAAKKKAAAGKK
32 32 A G - 0 0 84 42 47 GGGGGGGGGGAGGGAGGGGAGGAAAAAGGGGGAAAAGGPKK
33 33 A R 0 0 245 42 59 RRGGKKGKGGGSKGSGGKSGGSGGGGGGGKGSGGGSGGGKG
34 34 A G 0 0 142 38 0 GGGGGG GGGG GGGGGGGGGGGGGGGGGGGGGGGGG GG
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 31 0 0 0.000 0 1.00
4 4 A 3 0 0 0 0 0 0 0 82 0 0 3 0 0 0 0 9 0 0 3 34 0 0 0.685 22 0.66
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90 0 10 41 0 0 0.320 10 0.91
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 93 0 41 0 0 0.262 8 0.87
7 7 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 42 0 0 0.000 0 1.00
9 9 A 0 79 0 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.520 17 0.94
10 10 A 0 0 0 0 0 0 95 0 0 0 0 0 0 5 0 0 0 0 0 0 42 0 0 0.191 6 0.90
11 11 A 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 0 12 0 0 0 42 0 0 0.365 12 0.72
12 12 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 42 0 0 0.000 0 1.00
14 14 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 0 0 0 0 2 42 0 2 0.113 3 0.94
16 16 A 0 0 0 0 0 0 0 0 0 71 12 12 0 0 0 2 0 0 2 0 42 0 0 0.925 30 0.51
17 17 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 86 0 0 7 0 0 0 0 0 0 0 0 7 42 0 0 0.509 16 0.82
20 20 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 93 42 0 0 0.303 10 0.93
22 22 A 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 42 0 0 0.191 6 0.86
23 23 A 2 0 0 0 0 0 0 0 83 0 0 10 0 0 0 0 0 5 0 0 42 0 0 0.610 20 0.63
24 24 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 42 0 0 0.000 0 1.00
26 26 A 0 10 2 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.425 14 0.91
27 27 A 0 0 0 0 0 0 0 0 2 0 90 0 0 0 0 2 5 0 0 0 42 0 0 0.414 13 0.69
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 42 0 0 0.113 3 0.95
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 2 0 0 42 0 0 0.113 3 0.91
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 42 0 0 0.113 3 0.95
31 31 A 0 0 0 0 0 0 0 2 71 0 0 0 0 0 0 26 0 0 0 0 42 0 0 0.680 22 0.48
32 32 A 0 0 0 0 0 0 0 64 29 2 0 0 0 0 0 5 0 0 0 0 42 0 0 0.876 29 0.52
33 33 A 0 0 0 0 0 0 0 62 0 0 14 0 0 0 7 17 0 0 0 0 42 0 0 1.062 35 0.41
34 34 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
40 16 16 1 gRn
41 12 13 1 dRk
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