Complet list of 1iva hssp file
Complete list of 1iva.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1IVA
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER NEUROTOXIN 27-OCT-94 1IVA
COMPND MOL_ID: 1; MOLECULE: OMEGA-AGATOXIN-IVA; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: AGELENOPSIS APERTA; ORGANISM_TAXID: 69
AUTHOR M.D.REILY,K.E.HOLUB
DBREF 1IVA A 1 48 UNP P30288 TOG4A_AGEAP 1 48
SEQLENGTH 48
NCHAIN 1 chain(s) in 1IVA data set
NALIGN 7
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TOG4A_AGEAP 1OAV 1.00 1.00 1 48 1 48 48 0 0 48 P30288 Omega-agatoxin-Aa4a OS=Agelenopsis aperta PE=1 SV=1
2 : TOG4B_AGEAP 1OMA 0.74 0.87 3 48 38 83 46 0 0 83 P37045 Omega-agatoxin-Aa4b OS=Agelenopsis aperta PE=1 SV=2
3 : TXG01_LYCSI 0.51 0.67 3 41 34 72 39 0 0 82 B6DD52 U16-lycotoxin-Ls1a OS=Lycosa singoriensis PE=2 SV=1
4 : TXG02_LYCSI 0.51 0.67 3 41 34 72 39 0 0 82 B6DD53 U16-lycotoxin-Ls1b OS=Lycosa singoriensis PE=2 SV=1
5 : TXC17_CUPSA 0.47 0.63 4 41 2 38 38 1 1 40 B3EWT2 Toxin CSTX-17 OS=Cupiennius salei PE=1 SV=1
6 : L1J1D1_GUITH 0.46 0.59 3 37 189 225 37 1 2 349 L1J1D1 Uncharacterized protein OS=Guillardia theta CCMP2712 GN=GUITHDRAFT_111603 PE=4 SV=1
7 : TXH03_LYCSI 0.44 0.56 3 41 34 72 39 0 0 81 B6DD54 U17-lycotoxin-Ls1a OS=Lycosa singoriensis PE=2 SV=1
## ALIGNMENTS 1 - 7
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A K 0 0 168 2 0 K
2 2 A K + 0 0 179 2 0 K
3 3 A K S S- 0 0 192 7 48 KNRR KR
4 4 A a - 0 0 22 8 33 CCSSCCS
5 5 A I - 0 0 22 8 54 IICCIIC
6 6 A A + 0 0 56 8 42 AAAAPEA
7 7 A K S > S- 0 0 104 8 31 KEKKKKR
8 8 A D T 3 S+ 0 0 104 7 72 DDEE.GL
9 9 A Y T 3 S+ 0 0 111 8 33 YYYYHCY
10 10 A G < - 0 0 1 8 69 GGQQKGE
11 11 A R + 0 0 170 8 20 RKWWRWR
12 12 A b - 0 0 4 8 0 CCCCCCC
13 13 A K > - 0 0 123 8 76 KTDDTSS
14 14 A W T 3 S+ 0 0 213 8 79 WWWWWEM
15 15 A G T 3 S+ 0 0 75 8 61 GGNNSGT
16 16 A G S < S- 0 0 49 8 62 GGTTGGR
17 17 A T - 0 0 40 8 86 TTRRPGR
18 18 A P - 0 0 88 8 58 PKPPKQP
19 19 A c - 0 0 23 8 0 CCCCCCC
20 20 A a S S+ 0 0 58 8 44 CCCCCMC
21 21 A R S S+ 0 0 155 8 73 RRDDNEN
22 22 A G S S- 0 0 2 8 48 GGNNNgN
23 23 A R + 0 0 105 8 89 RRIIIhV
24 24 A G - 0 0 32 8 55 GPSSSGP
25 25 A b + 0 0 7 8 40 CCCCCPY
26 26 A I B -A 35 0A 106 8 73 IRIIHMV
27 27 A d - 0 0 48 8 0 CCCCCCC
28 28 A S - 0 0 48 8 23 SSSSNSS
29 29 A I S S+ 0 0 162 8 88 IMWWITL
30 30 A M S S- 0 0 115 8 77 MIIISCL
31 31 A G S S+ 0 0 44 8 0 GGGGGGG
32 32 A T S S+ 0 0 81 8 25 TTTTTST
33 33 A N S S+ 0 0 94 8 60 NNNNLNY
34 34 A d - 0 0 0 8 0 CCCCCCC
35 35 A E B -A 26 0A 45 8 46 EEEEKSE
36 36 A c - 0 0 0 8 0 CCCCCCC
37 37 A K - 0 0 76 8 55 KTKKRSK
38 38 A P S S+ 0 0 64 7 64 PPKKP K
39 39 A R + 0 0 100 7 79 RRGGG G
40 40 A L S > >S+ 0 0 78 7 24 LLIIL L
41 41 A I T 3 5S+ 0 0 85 7 18 IIIIF I
42 42 A M T 3 5S+ 0 0 157 3 0 MM
43 43 A E T < 5S- 0 0 37 3 0 EE
44 44 A G T 5S+ 0 0 69 3 0 GG
45 45 A L < - 0 0 98 3 0 LL
46 46 A G S S+ 0 0 50 3 60 GS
47 47 A L 0 0 156 3 19 LF
48 48 A A 0 0 117 3 0 AA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43 43 0 0 14 0 7 0 0 1.004 33 0.51
4 4 A 0 0 0 0 0 0 0 0 0 0 38 0 63 0 0 0 0 0 0 0 8 0 0 0.662 22 0.67
5 5 A 0 0 63 0 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 0 8 0 0 0.662 22 0.46
6 6 A 0 0 0 0 0 0 0 0 75 13 0 0 0 0 0 0 0 13 0 0 8 0 0 0.736 24 0.58
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 75 0 13 0 0 8 1 0 0.736 24 0.69
8 8 A 0 14 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 29 0 43 7 0 0 1.277 42 0.28
9 9 A 0 0 0 0 0 0 75 0 0 0 0 0 13 13 0 0 0 0 0 0 8 0 0 0.736 24 0.66
10 10 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 13 25 13 0 0 8 0 0 1.213 40 0.30
11 11 A 0 0 0 0 0 38 0 0 0 0 0 0 0 0 50 13 0 0 0 0 8 0 0 0.974 32 0.80
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 25 25 0 0 0 25 0 0 0 25 8 0 0 1.386 46 0.23
14 14 A 0 0 0 13 0 75 0 0 0 0 0 0 0 0 0 0 0 13 0 0 8 0 0 0.736 24 0.20
15 15 A 0 0 0 0 0 0 0 50 0 0 13 13 0 0 0 0 0 0 25 0 8 0 0 1.213 40 0.38
16 16 A 0 0 0 0 0 0 0 63 0 0 0 25 0 0 13 0 0 0 0 0 8 0 0 0.900 30 0.37
17 17 A 0 0 0 0 0 0 0 13 0 13 0 38 0 0 38 0 0 0 0 0 8 0 0 1.255 41 0.13
18 18 A 0 0 0 0 0 0 0 0 0 63 0 0 0 0 0 25 13 0 0 0 8 0 0 0.900 30 0.41
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
20 20 A 0 0 0 13 0 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 8 0 0 0.377 12 0.55
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 13 25 25 8 0 0 1.321 44 0.27
22 22 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 0 8 0 1 0.693 23 0.52
23 23 A 13 0 38 0 0 0 0 0 0 0 0 0 0 13 38 0 0 0 0 0 8 0 0 1.255 41 0.11
24 24 A 0 0 0 0 0 0 0 38 0 25 38 0 0 0 0 0 0 0 0 0 8 0 0 1.082 36 0.45
25 25 A 0 0 0 0 0 0 13 0 0 13 0 0 75 0 0 0 0 0 0 0 8 0 0 0.736 24 0.59
26 26 A 13 0 50 13 0 0 0 0 0 0 0 0 0 13 13 0 0 0 0 0 8 0 0 1.386 46 0.27
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 13 0 8 0 0 0.377 12 0.77
29 29 A 0 13 38 13 0 25 0 0 0 0 0 13 0 0 0 0 0 0 0 0 8 0 0 1.494 49 0.11
30 30 A 0 13 38 25 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0 8 0 0 1.494 49 0.22
31 31 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 13 88 0 0 0 0 0 0 0 0 8 0 0 0.377 12 0.74
33 33 A 0 13 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 75 0 8 0 0 0.736 24 0.40
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 13 0 75 0 0 8 0 0 0.736 24 0.53
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 0 13 13 0 0 13 63 0 0 0 0 8 0 0 1.074 35 0.45
38 38 A 0 0 0 0 0 0 0 0 0 57 0 0 0 0 0 43 0 0 0 0 7 0 0 0.683 22 0.35
39 39 A 0 0 0 0 0 0 0 57 0 0 0 0 0 0 43 0 0 0 0 0 7 0 0 0.683 22 0.20
40 40 A 0 71 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.598 19 0.75
41 41 A 0 0 86 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.410 13 0.81
42 42 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
45 45 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.40
47 47 A 0 67 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.80
48 48 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
6 21 209 2 gGLh
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