Complet list of 1irf hssp file
Complete list of 1irf.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1IRF
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER TRANSCRIPTION REGULATION 24-NOV-97 1IRF
COMPND MOL_ID: 1; MOLECULE: INTERFERON REGULATORY FACTOR-2; CHAIN: A; FRAGMEN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MUS MUSCULUS; ORGANISM_COMMON: HOUSE M
AUTHOR J.FURUI,K.UEGAKI,T.YAMAZAKI,M.SHIRAKAWA,M.B.SWINDELLS, H.HARADA,T.TANI
DBREF 1IRF A 2 113 UNP P23906 IRF2_MOUSE 2 113
SEQLENGTH 112
NCHAIN 1 chain(s) in 1IRF data set
NALIGN 19
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : D6R9N5_HUMAN 0.98 1.00 1 112 2 113 112 0 0 137 D6R9N5 Interferon regulatory factor 2 (Fragment) OS=Homo sapiens GN=IRF2 PE=2 SV=1
2 : D6RB08_HUMAN 0.98 1.00 1 112 2 113 112 0 0 161 D6RB08 Interferon regulatory factor 2 (Fragment) OS=Homo sapiens GN=IRF2 PE=2 SV=1
3 : K7GKU5_PIG 0.98 1.00 1 112 2 113 112 0 0 137 K7GKU5 Uncharacterized protein OS=Sus scrofa GN=IRF2 PE=4 SV=1
4 : Q95290_PIG 0.98 0.99 1 90 2 91 90 0 0 91 Q95290 Interferon regulatory factor 2 (Fragment) OS=Sus scrofa PE=2 SV=1
5 : Q2NKR9_BOVIN 0.97 0.99 1 112 2 113 112 0 0 130 Q2NKR9 IRF2 protein (Fragment) OS=Bos taurus GN=IRF2 PE=2 SV=1
6 : H0VMY5_CAVPO 0.96 0.99 1 112 2 114 113 1 1 350 H0VMY5 Uncharacterized protein OS=Cavia porcellus GN=IRF2 PE=4 SV=1
7 : B8JIT5_DANRE 0.85 0.93 1 112 2 113 112 0 0 140 B8JIT5 Uncharacterized protein OS=Danio rerio GN=irf2a PE=4 SV=1
8 : F8W548_DANRE 0.85 0.93 1 112 7 118 112 0 0 145 F8W548 Uncharacterized protein OS=Danio rerio GN=irf2a PE=4 SV=1
9 : Q6NYR7_DANRE 0.83 0.92 1 112 2 113 112 0 0 140 Q6NYR7 Interferon regulatory factor 2a OS=Danio rerio GN=irf2a PE=2 SV=1
10 : I3KG09_ORENI 0.78 0.88 1 112 2 116 115 1 3 346 I3KG09 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100695946 PE=4 SV=1
11 : Q5SX15_MOUSE 0.76 0.88 1 112 2 113 112 0 0 132 Q5SX15 Interferon regulatory factor 1 (Fragment) OS=Mus musculus GN=Irf1 PE=2 SV=1
12 : Q90WW5_CTEID 0.76 0.89 1 97 2 98 97 0 0 98 Q90WW5 Interferon regulatory factor OS=Ctenopharyngodon idella GN=IRF PE=4 SV=1
13 : R4GNI0_HUMAN 0.76 0.88 1 112 2 113 112 0 0 118 R4GNI0 Interferon regulatory factor 1 (Fragment) OS=Homo sapiens GN=IRF1 PE=4 SV=1
14 : S4RL13_PETMA 0.71 0.92 1 112 2 112 112 1 1 123 S4RL13 Uncharacterized protein OS=Petromyzon marinus PE=4 SV=1
15 : H3A4E0_LATCH 0.67 0.73 4 112 1 147 147 1 38 156 H3A4E0 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
16 : G3IBC8_CRIGR 0.51 0.58 1 112 2 167 166 1 54 369 G3IBC8 Interferon regulatory factor 1 OS=Cricetulus griseus GN=I79_020948 PE=4 SV=1
17 : Q4T2Y0_TETNG 0.51 0.66 4 112 1 145 145 1 36 154 Q4T2Y0 Chromosome 5 SCAF10152, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00008114001 PE=4 SV=1
18 : S7MYT2_MYOBR 0.38 0.57 7 106 25 151 127 1 27 438 S7MYT2 Interferon regulatory factor 4 OS=Myotis brandtii GN=D623_10020370 PE=4 SV=1
19 : L9L9E8_TUPCH 0.34 0.51 7 112 201 352 152 1 46 692 L9L9E8 Interferon regulatory factor 4 OS=Tupaia chinensis GN=TREES_T100006271 PE=3 SV=1
## ALIGNMENTS 1 - 19
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 A P 0 0 144 16 0 PPPPPPPPPPPPPP P
2 3 A V + 0 0 103 16 12 VVVVVVVVVVIVIV I
3 4 A E - 0 0 127 15 59 EEEXEEDDDETSTE T
4 5 A R + 0 0 160 18 0 RRRRRRRRRRRRRRRRR
5 6 A M - 0 0 108 18 2 MMMMMMMMMMMMMMMML
6 7 A R > - 0 0 166 18 0 RRRRRRRRRRRRRRRRR
7 8 A M H > S+ 0 0 33 20 6 MMMMMMMMMMMMMMMMLLL
8 9 A R H > S+ 0 0 63 20 0 RRRRRRRRRRRRRRRRRRR
9 10 A P H > S+ 0 0 55 20 30 PPPPPPPPPPPPPPPPPQQ
10 11 A W H X S+ 0 0 28 20 0 WWWWWWWWWWWWWWWWWWW
11 12 A L H X S+ 0 0 2 20 0 LLLLLLLLLLLLLLLLLLL
12 13 A E H X S+ 0 0 41 20 47 EEEEEEEEEQEEEEEEEII
13 14 A E H X S+ 0 0 93 20 55 EEEEEEEEEEMSMEDMEDD
14 15 A Q H X>S+ 0 0 29 20 7 QQQQQQQQQQQRQQQQQQQ
15 16 A I H <5S+ 0 0 3 20 0 IIIIIIIIIIIIIIIIIII
16 17 A N H <5S+ 0 0 99 20 36 NNNNNNNNNENDNNNNQDD
17 18 A S H <5S- 0 0 77 20 0 SSSSSSSSSSSSSSSSSSS
18 19 A N T <5 + 0 0 83 20 55 NNNNNNGGGCNNNQNNGGG
19 20 A T < + 0 0 76 20 76 TTTTMTQQQQQTQAKQRKK
20 21 A I S > S- 0 0 8 20 44 IIIIIIIIIIIIIIIIYYY
21 22 A P T 3 S+ 0 0 125 20 29 PPPPPPKKKPPAPPPPPPP
22 23 A G T 3 S+ 0 0 20 20 5 GGGGGGGGGDGGGGGGGGG
23 24 A L < + 0 0 0 20 20 LLLLLLLLLDLLLLLLVLL
24 25 A K E S-A 34 0A 57 20 90 KKKKKRHHHVIVIRRISVV
25 26 A W E -A 33 0A 32 20 12 WWWWWWWWWNWWWWWWWWW
26 27 A L E S+ 0 0A 60 20 70 LLLLLIVVVNIVIILILEE
27 28 A N E >>>S+A 32 0A 69 20 24 NNNNSNNNNvNNNNnndNN
28 29 A K G >45S+ 0 0 74 20 52 KKKKKKEEEqKKKKkqqEE
29 30 A E G 345S+ 0 0 130 20 12 EEEEEEEEEEEEEEEESEE
30 31 A K G <45S- 0 0 110 20 48 KKKKKKKKKKEEEQKEAKK
31 32 A K T <<5 + 0 0 24 20 67 KKKKKKKKKRMKMKKMQSS
32 33 A I E < +AB 27 109A 15 20 6 IIIIIIIIIIIMIIIIIII
33 34 A F E -AB 25 108A 2 20 0 FFFFFFFFFFFFFFFFFFF
34 35 A Q E -AB 24 107A 5 20 37 QQQQQQQQQQQSQQQQQRR
35 36 A I E - B 0 106A 0 20 0 IIIIIIIIIIIIIIIIIII
36 37 A P > - 0 0 19 20 0 PPPPPPPPPPPPPPPPPPP
37 38 A W T 3 - 0 0 11 20 0 WWWWWWWWWWWWWWWWWWW
38 39 A M T 3 + 0 0 21 20 59 MMMMMMMMTMKKKKMKKKK
39 40 A H S < S+ 0 0 75 20 0 HHHHHHHHHHHHHHHHHHH
40 41 A A S S+ 0 0 36 20 0 AAAAAAAAAAAAAAAAAAA
41 42 A A - 0 0 0 20 20 AAAAAAAAAAAAAAAAAGG
42 43 A R S S+ 0 0 168 20 33 RRRRRRRRRRKRKHRKRKK
43 44 A H S S- 0 0 118 20 24 HHHHHHHHHHHHHQHHHQQ
44 45 A G S S+ 0 0 48 20 20 GGGGGGGGGGGGGGGGGDD
45 46 A W S S+ 0 0 180 20 11 WWWWWWWWWWWWWFWWWYY
46 47 A D S S+ 0 0 85 20 34 DDDDDDDDDDDEDDDDSNN
47 48 A V + 0 0 30 20 64 VVVVVVLLLLIVIVLIIRR
48 49 A E + 0 0 113 20 31 EEEEEEEEEENDNNENDEE
49 50 A K S S+ 0 0 67 20 43 KKKKKKKKKKKKKRKKQEE
50 51 A D S >> S+ 0 0 0 20 0 DDDDDDDDDDDDDDDDDDD
51 52 A A H 3> S+ 0 0 31 20 0 AAAAAAAAAAAAAAAAAAA
52 53 A P H 3> S+ 0 0 75 20 66 PPPPPPPPPPCCCCPCTAA
53 54 A L H <> S+ 0 0 4 20 0 LLLLLLLLLLLLLLLLLLL
54 55 A F H X S+ 0 0 12 20 0 FFFFFFFFFFFFFFFFFFF
55 56 A R H >X S+ 0 0 86 20 47 RRRRRRMMMMRKRKKRRkk
56 57 A N H >X S+ 0 0 29 20 76 NNNNNNKKKRSQSNNSSaa
57 58 A W H 3X S+ 0 0 2 20 0 WWWWWWWWWWWWWWWWWWW
58 59 A A H <<>S+ 0 0 0 20 0 AAAAAAAAAAAAAAAAAAA
59 60 A I H X<5S+ 0 0 75 20 28 IIIIIIIIIIIIIVVIMLL
60 61 A H H 3<5S+ 0 0 28 20 40 HHHHHHHHHHHHHHHHHFF
61 62 A T T 3<5S- 0 0 44 20 32 TTTTTtTTTTTTTTTTTKK
62 63 A G T < 5S+ 0 0 56 20 0 GGGGGgGGGGGGGGGGGGG
63 64 A K < + 0 0 110 20 19 KKKKKKKKKKRKRKKRRKK
64 65 A H - 0 0 10 20 48 HHHHHHYYYYYFYHYYYFF
65 66 A Q >> - 0 0 107 20 74 QQQQQQCCCQKRKRQKRRR
66 67 A P B 34 S+d 69 0B 87 20 60 PPPPPPPPPPAEAPPIPEE
67 68 A G T 34 S+ 0 0 82 20 6 GGGGGGGGGGGGGDGGGGG
68 69 A I T <4 S+ 0 0 123 20 66 VVVVIVIIIVEVERVEKII
69 70 A D B < S-d 66 0B 76 20 36 DDDDDDDDDDKTKEDKDDD
70 71 A K - 0 0 148 20 47 KKKKKKKKKRETEGKEKKK
71 72 A P + 0 0 82 19 0 PPPPPPPPPPPPP.PPPPP
72 73 A D > - 0 0 37 20 0 DDDDDDDDDDDDDDDDDDD
73 74 A P H > S+ 0 0 78 20 0 PPPPPPPPPPPPPPPPPPP
74 75 A K H > S+ 0 0 138 20 35 KKKKKKKKKKKKKKKKKPP
75 76 A T H > S+ 0 0 80 20 10 TTTTTTTTTTTTTSTTTTT
76 77 A W H X S+ 0 0 19 20 0 WWWWWWWWWWWWWWWWWWW
77 78 A K H X S+ 0 0 63 20 0 KKKKKKKKKKKKKKKKKKK
78 79 A A H X S+ 0 0 52 20 33 AAAAAAAAAAAAATAAATT
79 80 A N H X S+ 0 0 27 20 35 NNNNNNNNNNNNNNNNNRR
80 81 A F H X S+ 0 0 0 20 8 FFFFFFFFLFFFFFFFFLL
81 82 A R H X S+ 0 0 76 20 0 RRRRRRRRRRRRRRRRRRR
82 83 A C H < S+ 0 0 85 20 0 CCCCCCCCCCCCCCCCCCC
83 84 A A H >< S+ 0 0 12 20 0 AAAAAAAAAAAAAAAAAAA
84 85 A M H 3< S+ 0 0 9 20 7 MMMMMMMMMMMMMLMMLLL
85 86 A N T 3< S+ 0 0 121 20 0 NNNNNNNNNNNNNNNNNNN
86 87 A S S < S+ 0 0 74 20 32 SSSSSSSSSSSSSSSSSKK
87 88 A L S > S- 0 0 16 20 47 LLLLLLLLLLLLLLLLLSS
88 89 A P T 3 S+ 0 0 139 20 37 PPPPPPPPPPPPPPPPPNN
89 90 A D T 3 S+ 0 0 15 20 0 DDDDDDDDDDDDDDDDDDD
90 91 A I E < -C 110 0A 27 20 27 IIIIIIIIIIIIIVIIVFF
91 92 A E E -C 109 0A 81 19 30 EEE EEEEEEEEEKEECEE
92 93 A E E +C 108 0A 68 19 0 EEE EEEEEEEEEEEEEEE
93 94 A V E +C 107 0A 58 19 25 VVV VVVVVVVVVLVVLLL
94 95 A K - 0 0 78 19 57 KKK KKKKKKKKKRKKQVV
95 96 A D - 0 0 25 19 16 DDD DDDDDDDDDDDDEEE
96 97 A R S S- 0 0 194 19 47 KKK KKKKKKQKQKKQHRR
97 98 A S S S+ 0 0 62 19 0 SSS SSSSSSSSSSSSSSS
98 99 A I S S+ 0 0 118 18 88 III IIMMMIR RKMRRQQ
99 100 A K S S+ 0 0 139 18 68 KKK KKKKKKN NKKNKLL
100 101 A K + 0 0 123 18 39 KKK KKKKKKK KKKKRDD
101 102 A G S S+ 0 0 73 18 49 GGG GGGGGGG GGGGGII
102 103 A N S S- 0 0 143 18 56 NNN NNSSSTS SENSNSS
103 104 A N - 0 0 101 18 45 NNN NNNNNNS SNNSNDD
104 105 A A + 0 0 30 18 27 AAA AAAAAAA AAAAAPP
105 106 A F - 0 0 60 18 34 FFF FFFFFFV VYFVFYY
106 107 A R E -B 35 0A 47 18 19 RRR RRRRRRR RRRRRKK
107 108 A V E -BC 34 93A 29 17 18 VVV VVMMMVV VVVVV V
108 109 A Y E -BC 33 92A 0 17 0 YYY YYYYYYY YYYYY Y
109 110 A R E -BC 32 91A 115 17 31 RRR RRRRRKR RVRRK R
110 111 A M E - C 0 90A 2 17 15 MMM MMMMMMM MMMMM I
111 112 A L 0 0 89 17 11 LLL LLLLLLL LLLLL V
112 113 A P 0 0 147 17 28 PPP PPSSSSP PPPPP P
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 2 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 16 0 0 0.000 0 1.00
2 3 A 81 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0.483 16 0.88
3 4 A 0 0 0 0 0 0 0 0 0 0 7 20 0 0 0 0 0 53 0 20 15 0 0 1.160 38 0.40
4 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 18 0 0 0.000 0 1.00
5 6 A 0 6 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.215 7 0.97
6 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 18 0 0 0.000 0 1.00
7 8 A 0 15 0 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.423 14 0.94
8 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 20 0 0 0.000 0 1.00
9 10 A 0 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 10 0 0 0 20 0 0 0.325 10 0.70
10 11 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
11 12 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
12 13 A 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 5 85 0 0 20 0 0 0.518 17 0.53
13 14 A 0 0 0 15 0 0 0 0 0 0 5 0 0 0 0 0 0 65 0 15 20 0 0 0.999 33 0.45
14 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 95 0 0 0 20 0 0 0.199 6 0.92
15 16 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
16 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 75 15 20 0 0 0.800 26 0.64
17 18 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
18 19 A 0 0 0 0 0 0 0 30 0 0 0 0 5 0 0 0 5 0 60 0 20 0 0 0.967 32 0.44
19 20 A 0 0 0 5 0 0 0 0 5 0 0 35 0 0 5 15 35 0 0 0 20 0 0 1.469 49 0.24
20 21 A 0 0 85 0 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.423 14 0.55
21 22 A 0 0 0 0 0 0 0 0 5 80 0 0 0 0 0 15 0 0 0 0 20 0 0 0.613 20 0.70
22 23 A 0 0 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 5 20 0 0 0.199 6 0.94
23 24 A 5 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 20 0 0 0.394 13 0.80
24 25 A 20 0 15 0 0 0 0 0 0 0 5 0 0 15 15 30 0 0 0 0 20 0 0 1.687 56 0.09
25 26 A 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 0 5 0 20 0 0 0.199 6 0.87
26 27 A 20 40 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 5 0 20 0 0 1.415 47 0.30
27 28 A 5 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 85 5 20 0 4 0.588 19 0.75
28 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60 15 25 0 0 20 0 0 0.938 31 0.48
29 30 A 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 95 0 0 20 0 0 0.199 6 0.88
30 31 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 70 5 20 0 0 20 0 0 0.871 29 0.52
31 32 A 0 0 0 15 0 0 0 0 0 0 10 0 0 0 5 65 5 0 0 0 20 0 0 1.094 36 0.33
32 33 A 0 0 95 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.93
33 34 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
34 35 A 0 0 0 0 0 0 0 0 0 0 5 0 0 0 10 0 85 0 0 0 20 0 0 0.518 17 0.62
35 36 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
36 37 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
37 38 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
38 39 A 0 0 0 55 0 0 0 0 0 0 0 5 0 0 0 40 0 0 0 0 20 0 0 0.845 28 0.41
39 40 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 20 0 0 0.000 0 1.00
40 41 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
41 42 A 0 0 0 0 0 0 0 10 90 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.325 10 0.80
42 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 5 70 25 0 0 0 0 20 0 0 0.746 24 0.66
43 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 85 0 0 15 0 0 0 20 0 0 0.423 14 0.75
44 45 A 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 0 0 0 10 20 0 0 0.325 10 0.80
45 46 A 0 0 0 0 5 85 10 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.518 17 0.89
46 47 A 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 5 10 80 20 0 0 0.708 23 0.66
47 48 A 45 25 20 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 20 0 0 1.258 41 0.35
48 49 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 20 10 20 0 0 0.802 26 0.68
49 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 80 5 10 0 0 20 0 0 0.708 23 0.56
50 51 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 20 0 0 0.000 0 1.00
51 52 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
52 53 A 0 0 0 0 0 0 0 0 10 60 0 5 25 0 0 0 0 0 0 0 20 0 0 1.033 34 0.34
53 54 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
54 55 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
55 56 A 0 0 0 20 0 0 0 0 0 0 0 0 0 0 55 25 0 0 0 0 20 0 2 0.997 33 0.53
56 57 A 0 0 0 0 0 0 0 0 10 0 20 0 0 0 5 15 5 0 45 0 20 0 0 1.496 49 0.24
57 58 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
58 59 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
59 60 A 10 10 75 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.826 27 0.72
60 61 A 0 0 0 0 10 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 20 0 0 0.325 10 0.60
61 62 A 0 0 0 0 0 0 0 0 0 0 0 90 0 0 0 10 0 0 0 0 20 0 1 0.325 10 0.67
62 63 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
63 64 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 80 0 0 0 0 20 0 0 0.500 16 0.81
64 65 A 0 0 0 0 15 0 45 0 0 0 0 0 0 40 0 0 0 0 0 0 20 0 0 1.010 33 0.52
65 66 A 0 0 0 0 0 0 0 0 0 0 0 0 15 0 25 15 45 0 0 0 20 0 0 1.275 42 0.26
66 67 A 0 0 5 0 0 0 0 0 10 70 0 0 0 0 0 0 0 15 0 0 20 0 0 0.914 30 0.39
67 68 A 0 0 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 5 20 0 0 0.199 6 0.93
68 69 A 40 0 35 0 0 0 0 0 0 0 0 0 0 0 5 5 0 15 0 0 20 0 0 1.318 43 0.33
69 70 A 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 15 0 5 0 75 20 0 0 0.800 26 0.63
70 71 A 0 0 0 0 0 0 0 5 0 0 0 5 0 0 5 70 0 15 0 0 20 1 0 0.984 32 0.53
71 72 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 19 0 0 0.000 0 1.00
72 73 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 20 0 0 0.000 0 1.00
73 74 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
74 75 A 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 90 0 0 0 0 20 0 0 0.325 10 0.65
75 76 A 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.90
76 77 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
77 78 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 20 0 0 0.000 0 1.00
78 79 A 0 0 0 0 0 0 0 0 85 0 0 15 0 0 0 0 0 0 0 0 20 0 0 0.423 14 0.66
79 80 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 90 0 20 0 0 0.325 10 0.65
80 81 A 0 15 0 0 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.423 14 0.91
81 82 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 20 0 0 0.000 0 1.00
82 83 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
83 84 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
84 85 A 0 20 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.500 16 0.93
85 86 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 20 0 0 0.000 0 1.00
86 87 A 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 10 0 0 0 0 20 0 0 0.325 10 0.67
87 88 A 0 90 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 20 0 0 0.325 10 0.52
88 89 A 0 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 10 0 20 0 0 0.325 10 0.62
89 90 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 20 0 0 0.000 0 1.00
90 91 A 10 0 80 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.639 21 0.73
91 92 A 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 5 0 89 0 0 19 0 0 0.409 13 0.70
92 93 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 19 0 0 0.000 0 1.00
93 94 A 79 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 0 0 0.515 17 0.74
94 95 A 11 0 0 0 0 0 0 0 0 0 0 0 0 0 5 79 5 0 0 0 19 0 0 0.734 24 0.43
95 96 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 84 19 0 0 0.436 14 0.84
96 97 A 0 0 0 0 0 0 0 0 0 0 0 0 0 5 16 63 16 0 0 0 19 0 0 1.028 34 0.52
97 98 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 19 0 0 0.000 0 1.00
98 99 A 0 0 39 22 0 0 0 0 0 0 0 0 0 0 22 6 11 0 0 0 18 0 0 1.440 48 0.11
99 100 A 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 17 0 18 0 0 0.778 25 0.31
100 101 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 83 0 0 0 11 18 0 0 0.557 18 0.61
101 102 A 0 0 11 0 0 0 0 89 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.349 11 0.51
102 103 A 0 0 0 0 0 0 0 0 0 0 44 6 0 0 0 0 0 6 44 0 18 0 0 1.042 34 0.43
103 104 A 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 72 11 18 0 0 0.778 25 0.55
104 105 A 0 0 0 0 0 0 0 0 89 11 0 0 0 0 0 0 0 0 0 0 18 0 0 0.349 11 0.73
105 106 A 17 0 0 0 67 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.868 28 0.66
106 107 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89 11 0 0 0 0 18 0 0 0.349 11 0.81
107 108 A 82 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.466 15 0.82
108 109 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.000 0 1.00
109 110 A 6 0 0 0 0 0 0 0 0 0 0 0 0 0 82 12 0 0 0 0 17 0 0 0.578 19 0.69
110 111 A 0 0 6 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.224 7 0.85
111 112 A 6 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.224 7 0.88
112 113 A 0 0 0 0 0 0 0 0 0 76 24 0 0 0 0 0 0 0 0 0 17 0 0 0.546 18 0.71
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
6 62 63 1 tVg
10 28 29 3 vNCLq
15 25 25 38 nKAFLLNQTKTCGFTKKKPCKHFFCKILTNLITFFLFRFk
16 28 29 54 nKVQNGLFKAVRMGQSKPDVGVKRGSQSFPILGGWVYSATNPVVSKLTQSYVCTIq
17 25 25 36 dQVNLRHLTHTHTHTRKLETDTFFSKSVFLSCYLQMNq
18 50 74 27 kVTRTWGARGRDGGRAPESRRIPSPGSSa
19 50 250 46 kVTGMWGALGRAGGEGPSEPCCPGSPISPLAGAAVFSGKGWPGPPDGa
//