Complet list of 1ioj hssp file
Complete list of 1ioj.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1IOJ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER APOLIPOPROTEIN 12-MAY-98 1IOJ
COMPND MOL_ID: 1; MOLECULE: APOC-I; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR A.ROZEK,J.T.SPARROW,K.H.WEISGRABER,R.J.CUSHLEY
DBREF 1IOJ A 1 57 UNP P02654 APOC1_HUMAN 27 83
SEQLENGTH 57
NCHAIN 1 chain(s) in 1IOJ data set
NALIGN 37
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : APOC1_HUMAN 1.00 1.00 1 57 27 83 57 0 0 83 P02654 Apolipoprotein C-I OS=Homo sapiens GN=APOC1 PE=1 SV=1
2 : K7ERI9_HUMAN 1.00 1.00 1 51 27 77 51 0 0 77 K7ERI9 Truncated apolipoprotein C-I (Fragment) OS=Homo sapiens GN=APOC1 PE=2 SV=1
3 : APO1B_PANTR 0.98 1.00 1 57 27 83 57 0 0 83 P0CE38 Apolipoprotein C-I, basic form OS=Pan troglodytes GN=APOC1B PE=1 SV=1
4 : K7C9T7_PANTR 0.98 1.00 1 57 27 83 57 0 0 83 K7C9T7 Apolipoprotein C-I OS=Pan troglodytes GN=APOC1 PE=4 SV=1
5 : I6L580_PONAB 0.88 0.98 1 57 27 83 57 0 0 83 I6L580 Uncharacterized protein OS=Pongo abelii GN=LOC100448396 PE=4 SV=1
6 : APO1B_COLGU 0.84 0.98 1 57 27 83 57 0 0 83 P0DKU8 Apolipoprotein C-I, basic form OS=Colobus guereza GN=APOC1B PE=3 SV=1
7 : A2V9Y4_MACFA 0.82 0.98 1 57 27 83 57 0 0 83 A2V9Y4 Putative uncharacterized protein OS=Macaca fascicularis PE=4 SV=1
8 : APO1B_PAPHA 0.82 0.98 1 57 27 83 57 0 0 83 P34929 Apolipoprotein C-I, basic form OS=Papio hamadryas GN=APOC1B PE=1 SV=1
9 : G7PXV4_MACFA 0.82 0.98 1 57 25 81 57 0 0 81 G7PXV4 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_09849 PE=4 SV=1
10 : H9FNA4_MACMU 0.82 0.98 1 57 27 83 57 0 0 83 H9FNA4 Apolipoprotein C-I OS=Macaca mulatta GN=APOC1 PE=4 SV=1
11 : APOC1_ATEGE 0.71 0.95 3 57 32 86 55 0 0 86 P0DKV3 Apolipoprotein C-I OS=Ateles geoffroyi GN=APOC1 PE=3 SV=1
12 : APO1A_GORGO 0.68 0.95 1 57 27 83 57 0 0 83 P0CF78 Apolipoprotein C-I, acidic form OS=Gorilla gorilla gorilla GN=APOC1A PE=3 SV=1
13 : APO1A_PANPA 0.68 0.95 1 57 27 83 57 0 0 83 P86336 Apolipoprotein C-I, acidic form OS=Pan paniscus GN=APOC1A PE=1 SV=2
14 : APO1A_PANTR 0.68 0.95 1 57 27 83 57 0 0 83 P0CE37 Apolipoprotein C-I, acidic form OS=Pan troglodytes GN=APOC1A PE=1 SV=1
15 : APO1A_PONAB 0.68 0.95 1 57 27 83 57 0 0 83 P0CE39 Apolipoprotein C-I, acidic form OS=Pongo abelii GN=APOC1A PE=1 SV=1
16 : APOC1_AOTNA 0.67 0.91 1 57 30 86 57 0 0 86 P0DKV2 Apolipoprotein C-I OS=Aotus nancymaae GN=APOC1 PE=3 SV=1
17 : APOC1_CALMO 0.67 0.93 1 57 30 86 57 0 0 86 P0DKV4 Apolipoprotein C-I OS=Callicebus moloch GN=APOC1 PE=3 SV=1
18 : APOC1_SAIBB 0.67 0.89 1 57 30 86 57 0 0 86 P0DKV5 Apolipoprotein C-I OS=Saimiri boliviensis boliviensis GN=APOC1 PE=3 SV=1
19 : APOC1_LEPWE 0.66 0.84 1 54 27 84 58 1 4 88 P0DM83 Apolipoprotein C-I OS=Leptonychotes weddelli GN=APOC1 PE=3 SV=1
20 : G8F204_MACMU 0.66 0.88 2 57 26 81 56 0 0 81 G8F204 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_21575 PE=4 SV=1
21 : H0XNB8_OTOGA 0.66 0.81 1 55 23 80 58 1 3 80 H0XNB8 Uncharacterized protein OS=Otolemur garnettii GN=APOC1 PE=4 SV=1
22 : B6S6L6_RABIT 0.65 0.82 8 54 33 83 51 1 4 87 B6S6L6 Apolipoprotein C-I (Precursor) OS=Oryctolagus cuniculus GN=apoCI PE=4 SV=1
23 : F7F732_CALJA 0.65 0.89 1 57 30 86 57 0 0 86 F7F732 Uncharacterized protein OS=Callithrix jacchus GN=APOC1 PE=4 SV=1
24 : APOC1_MOUSE 0.64 0.79 1 54 27 84 58 1 4 88 P34928 Apolipoprotein C-I OS=Mus musculus GN=Apoc1 PE=1 SV=1
25 : APOC1_RAT 0.64 0.79 1 54 27 84 58 1 4 88 P19939 Apolipoprotein C-I OS=Rattus norvegicus GN=Apoc1 PE=2 SV=1
26 : G1M242_AILME 0.64 0.84 1 54 27 84 58 1 4 88 G1M242 Uncharacterized protein OS=Ailuropoda melanoleuca GN=APOC1 PE=4 SV=1
27 : M0R547_RAT 0.64 0.79 1 54 27 84 58 1 4 88 M0R547 Protein LOC100910181 OS=Rattus norvegicus GN=LOC100910181 PE=4 SV=1
28 : APO1A_COLGU 0.63 0.83 3 48 29 74 46 0 0 74 P0DKU7 Apolipoprotein C-I, acidic form OS=Colobus guereza GN=APOC1A PE=3 SV=1
29 : APOC1_TUPGL 0.62 0.81 1 54 27 84 58 1 4 88 Q9XSN5 Apolipoprotein C-I OS=Tupaia glis GN=APOC1 PE=2 SV=1
30 : D2HPB6_AILME 0.60 0.79 1 39 8 50 43 1 4 50 D2HPB6 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_013609 PE=4 SV=1
31 : M3Y497_MUSPF 0.60 0.83 1 54 27 84 58 1 4 88 M3Y497 Uncharacterized protein OS=Mustela putorius furo GN=APOC1 PE=4 SV=1
32 : APOC1_CANFA 0.59 0.81 1 54 27 84 58 1 4 88 P56595 Apolipoprotein C-I OS=Canis familiaris GN=APOC1 PE=1 SV=1
33 : G5CBM5_HETGA 0.59 0.79 1 54 27 84 58 1 4 88 G5CBM5 Apolipoprotein C-I OS=Heterocephalus glaber GN=GW7_18159 PE=4 SV=1
34 : M0R7G5_RAT 0.54 0.70 1 52 27 82 56 1 4 88 M0R7G5 Protein LOC100911905 OS=Rattus norvegicus GN=LOC100911905 PE=4 SV=1
35 : H0WAV6_CAVPO 0.52 0.78 1 54 27 84 58 1 4 88 H0WAV6 Uncharacterized protein OS=Cavia porcellus GN=APOC1 PE=4 SV=1
36 : W5K2K6_ASTMX 0.36 0.64 2 53 24 79 56 1 4 85 W5K2K6 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
37 : F6R091_MONDO 0.35 0.77 1 53 27 83 57 1 4 88 F6R091 Uncharacterized protein OS=Monodelphis domestica GN=APOC1 PE=4 SV=1
## ALIGNMENTS 1 - 37
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A T 0 0 161 33 35 TTTTAAAAAA AAAAAASA P GAAAA AAAAAAA S
2 2 A P - 0 0 59 35 35 PPPPPPPPPP PPPPVVVPPA VPPPP PPPGPPPPS
3 3 A D - 0 0 169 37 30 DDDDDDDDDDDEEEDDDEEDQ DDDEDDDEEEDDDTS
4 4 A V + 0 0 75 37 56 VVVVVVVVVVTVVVVTTAIVG TLFILVFIIIFFLIL
5 5 A S S S- 0 0 114 37 26 SSSSSSSSSSSSSSSSSSSST SSSSSSSSSSTSGEA
6 6 A S S S+ 0 0 92 37 54 SSSSSSSSSSSNNNNSTSSNM SGSSGNSSSSSSSQQ
7 7 A A S > S+ 0 0 45 37 65 AAAAAAAAAAGPPPPGGGTPD GTATTPTTTTTAAHS
8 8 A L T 4 S+ 0 0 41 38 13 LLLLLLLLLLLFFFFLLLLFLLFLMLLFLLFFLMLFF
9 9 A D T 4 S+ 0 0 116 38 29 DDDDDDDDDDDDDDDDDDgDdeDeegeDegeeeeeae
10 10 A K T 4 S+ 0 0 177 38 41 KKKKKKKKKKKGGGGKKKkVhkKkkkkVkkkkkkkkk
11 11 A L S < S+ 0 0 72 38 8 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVV
12 12 A K S > S+ 0 0 148 38 26 KKKKKKKKKKKEEEEKKKKEKKKKKKKEKKKKKKKKK
13 13 A E H > S+ 0 0 131 38 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
14 14 A F H > S+ 0 0 134 38 4 FFFFFFFFFFFLLLLFFFFFFFFFFFFFFFFFFFFFF
15 15 A G H > S+ 0 0 1 38 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
16 16 A N H X S+ 0 0 115 38 45 NNNNNNNNNNNKKKKTNNNKNNNNNNNKNNNNSNSSE
17 17 A T H X S+ 0 0 85 38 17 TTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTITTDT
18 18 A L H X S+ 0 0 93 38 12 LLLLLLLLLLLLLLLLLLLLMLMLLLLLLLLLLLVVV
19 19 A E H X S+ 0 0 51 38 20 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEAV
20 20 A D H < S+ 0 0 106 38 12 DDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDDSEE
21 21 A K H X S+ 0 0 113 38 24 KKKKKKKKKKKNNNNKKKKNKKKKKKKNKKKKKKKKK
22 22 A A H X S+ 0 0 26 38 50 AAAAAAAAAAVTTTTVVVAVAAVAAAAVAAAAAAATT
23 23 A R H < S+ 0 0 121 38 32 RRRRRRWWWWRQRRRRRRRGRRRRRRRRKRRRLRRMK
24 24 A E H 4 S+ 0 0 78 38 51 EEEEEEEEEEEEEEEEEEAEEMEAAAAEKAAAAAAAA
25 25 A L H X S+ 0 0 76 38 79 LLLLVVVVVVFLFFFFFFAFVAFAAAAFAAAAAAATA
26 26 A I T < S+ 0 0 85 38 13 IIIIIIIIIIFIIIIFFFIIIIFIIIIIIIIIIIIII
27 27 A S T 4 S+ 0 0 87 38 58 SSSSNNNNNNNNNNNNNKENDENEEEENEEEEEEEKT
28 28 A R T 4 S+ 0 0 174 38 64 RRRRRRRRRRRRRRRRRRSLRHRHHSHLRSTSHHHEQ
29 29 A I < + 0 0 30 38 5 IIIIIIIIIIVIIIIVVIIIIIVIIIIIIIIIIIIII
30 30 A K S S- 0 0 152 38 34 KKKKKKKKKKKTTTTKKKKTKKKKKKKTKKKKKKKEK
31 31 A Q S S+ 0 0 91 38 21 QQQQQQQQQQEQQQQEEEQQQQEQQQQQQQQKQQQQH
32 32 A S S S+ 0 0 65 38 24 SSNNSSSSSSSSSSSSSSSSSSSKKSKSSSSSSKSSS
33 33 A E S S+ 0 0 163 38 17 EEEEEEEEEEDEEEEDDDDEDEDEEDEEDDDDEEDED
34 34 A L S S+ 0 0 119 38 29 LLLLLFFFFFILLLLIIIILIIIIIIILLIIILIFFL
35 35 A S S S+ 0 0 6 38 48 SSSSSPPPPPPPPPPPPPPPPTPLMPLPPPPPPMPAP
36 36 A A S > S+ 0 0 68 38 31 AAAAAAAAAAAAAAAAAAAAATATIATAAAAAAITAS
37 37 A K H > S+ 0 0 170 38 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
38 38 A M H > S+ 0 0 81 38 39 MMMMTTTTTTTMMMMTTTTTTTTTTTTTTTTTTTTTT
39 39 A R H > S+ 0 0 135 38 6 RRRRRRRRRRRWWWWRRRRRRRRRRRRRRRRRRRWKR
40 40 A E H < S+ 0 0 151 37 48 EEEEDDDDDDNDDDDNNNNDNNNANNADN NNNDKNT
41 41 A W H X S+ 0 0 125 37 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWW
42 42 A F H X S+ 0 0 98 37 7 FFFFFFFFFFFFFFFFFFFFFFFFFFFFF FFFLLFI
43 43 A S H < S+ 0 0 78 37 23 SSSSSSSSSSSSSSSSSSSSSSSSSSSST SSSESTT
44 44 A E H > S+ 0 0 81 37 10 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE EEDQKEE
45 45 A T H X S+ 0 0 49 37 35 TTTTTTTTTTTTTTTTTTTTTTTATTAIT TAATTQN
46 46 A F H X S+ 0 0 137 37 26 FFFFFFFFFFLFFFFLLLFFFILFLFFFF YFFNVFI
47 47 A Q H > S+ 0 0 85 37 71 QQQQRRRRRRQRRRRQQQHRQSQGNNGGG SKSKSEQ
48 48 A K H X S+ 0 0 115 37 4 KKKKRKKKKKKKKKRKKKKKKKKKKKKKK KKKKKKK
49 49 A V H >X S+ 0 0 81 36 16 VVVVVVVVVVVVVVVVVVVVVVVVMVV V LVVGVMV
50 50 A K H 3< S+ 0 0 58 36 10 KKKKKKKKKKKKKKKKKKKKKKKKKKK R KKQKRKK
51 51 A E H 3< S+ 0 0 123 36 17 EEEEEEEEEEEEEEEEEEEEEEEEEEE D EEEKEKD
52 52 A K H << S+ 0 0 158 35 29 K KKKKKKKKKKKKKKKKQKKKKKKRK T RHKEKQK
53 53 A L S < S+ 0 0 121 34 12 L LLLLLLLLLLLLLLLLLLLFLLLFL F LLF FFV
54 54 A K S S- 0 0 143 32 21 K KKKKKKKKRKKKKRRRKRKKGKKKK K KKK K
55 55 A I S S- 0 0 141 21 0 I IIIIIIIIIIIIIIII II I
56 56 A D 0 0 120 20 38 D DDDNNNNNEDDDDEEE N E
57 57 A S 0 0 109 20 0 S SSSSSSSSSSSSSSSS S S
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 3 73 3 6 15 0 0 0 0 0 0 0 0 33 0 0 0.899 30 0.65
2 2 A 11 0 0 0 0 0 0 3 3 80 3 0 0 0 0 0 0 0 0 0 35 0 0 0.731 24 0.64
3 3 A 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 3 24 0 68 37 0 0 0.902 30 0.70
4 4 A 46 11 16 0 11 0 0 3 3 0 0 11 0 0 0 0 0 0 0 0 37 0 0 1.569 52 0.44
5 5 A 0 0 0 0 0 0 0 3 3 0 86 5 0 0 0 0 0 3 0 0 37 0 0 0.576 19 0.73
6 6 A 0 0 0 3 0 0 0 5 0 0 68 3 0 0 0 0 5 0 16 0 37 0 0 1.071 35 0.45
7 7 A 0 0 0 0 0 0 0 14 38 16 3 24 0 3 0 0 0 0 0 3 37 0 0 1.570 52 0.34
8 8 A 0 66 0 5 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.789 26 0.87
9 9 A 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 29 0 61 38 0 16 0.959 32 0.71
10 10 A 5 0 0 0 0 0 0 11 0 0 0 0 0 3 0 82 0 0 0 0 38 0 0 0.654 21 0.59
11 11 A 5 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.206 6 0.92
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 0 16 0 0 38 0 0 0.436 14 0.74
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 38 0 0 0.000 0 1.00
14 14 A 0 11 0 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.336 11 0.95
15 15 A 0 0 0 0 0 0 0 97 0 0 0 3 0 0 0 0 0 0 0 0 38 0 0 0.122 4 0.93
16 16 A 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 16 0 3 71 0 38 0 0 0.926 30 0.54
17 17 A 0 0 3 0 0 0 0 0 0 0 0 92 0 0 0 0 0 0 3 3 38 0 0 0.363 12 0.83
18 18 A 8 87 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.478 15 0.88
19 19 A 3 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 92 0 0 38 0 0 0.363 12 0.79
20 20 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 8 0 89 38 0 0 0.396 13 0.87
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 0 0 16 0 38 0 0 0.436 14 0.76
22 22 A 18 0 0 0 0 0 0 0 66 0 0 16 0 0 0 0 0 0 0 0 38 0 0 0.879 29 0.49
23 23 A 0 3 0 3 0 11 0 3 0 0 0 0 0 0 74 5 3 0 0 0 38 0 0 1.000 33 0.67
24 24 A 0 0 0 3 0 0 0 0 34 0 0 0 0 0 0 3 0 61 0 0 38 0 0 0.862 28 0.49
25 25 A 18 16 0 0 26 0 0 0 37 0 0 3 0 0 0 0 0 0 0 0 38 0 0 1.418 47 0.20
26 26 A 0 0 87 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.389 12 0.86
27 27 A 0 0 0 0 0 0 0 0 0 0 13 3 0 0 0 5 0 34 42 3 38 0 0 1.344 44 0.42
28 28 A 0 5 0 0 0 0 0 0 0 0 11 3 0 18 58 0 3 3 0 0 38 0 0 1.307 43 0.36
29 29 A 11 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.336 11 0.94
30 30 A 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 82 0 3 0 0 38 0 0 0.553 18 0.65
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 82 13 0 0 38 0 0 0.624 20 0.78
32 32 A 0 0 0 0 0 0 0 0 0 0 84 0 0 0 0 11 0 0 5 0 38 0 0 0.537 17 0.76
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 37 38 0 0 0.658 21 0.82
34 34 A 0 39 42 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 1.043 34 0.70
35 35 A 0 5 0 5 0 0 0 0 3 68 16 3 0 0 0 0 0 0 0 0 38 0 0 1.052 35 0.52
36 36 A 0 0 5 0 0 0 0 0 82 0 3 11 0 0 0 0 0 0 0 0 38 0 0 0.654 21 0.68
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 38 0 0 0.000 0 1.00
38 38 A 0 0 0 24 0 0 0 0 0 0 0 76 0 0 0 0 0 0 0 0 38 0 0 0.547 18 0.61
39 39 A 0 0 0 0 0 13 0 0 0 0 0 0 0 0 84 3 0 0 0 0 38 0 0 0.507 16 0.93
40 40 A 0 0 0 0 0 0 0 0 5 0 0 3 0 0 0 3 0 14 41 35 37 0 0 1.357 45 0.51
41 41 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0.000 0 1.00
42 42 A 0 5 3 0 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0.333 11 0.92
43 43 A 0 0 0 0 0 0 0 0 0 0 89 8 0 0 0 0 0 3 0 0 37 0 0 0.403 13 0.76
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 92 0 3 37 0 0 0.370 12 0.89
45 45 A 0 0 3 0 0 0 0 0 11 0 0 81 0 0 0 0 3 0 3 0 37 0 0 0.703 23 0.64
46 46 A 3 16 5 0 70 0 3 0 0 0 0 0 0 0 0 0 0 0 3 0 37 0 0 0.993 33 0.73
47 47 A 0 0 0 0 0 0 0 11 0 0 11 0 0 3 30 5 32 3 5 0 37 0 0 1.717 57 0.29
48 48 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 37 0 0 0.210 7 0.95
49 49 A 89 3 0 6 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.464 15 0.83
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 92 3 0 0 0 36 0 0 0.340 11 0.90
51 51 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 89 0 6 36 0 0 0.426 14 0.83
52 52 A 0 0 0 0 0 0 0 0 0 0 0 3 0 3 6 80 6 3 0 0 35 0 0 0.810 27 0.71
53 53 A 3 79 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 0 0 0.593 19 0.88
54 54 A 0 0 0 0 0 0 0 3 0 0 0 0 0 0 16 81 0 0 0 0 32 0 0 0.567 18 0.78
55 55 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0.000 0 1.00
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 30 45 20 0 0 1.067 35 0.61
57 57 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
19 10 36 4 gRIPDk
21 10 32 3 dFTRh
22 3 35 4 eLIPDk
24 10 36 4 eSIPDk
25 10 36 4 eSLPDk
26 10 36 4 gSIPDk
27 10 36 4 eSIPDk
29 10 36 4 eGLPDk
30 10 17 4 gSIPDk
31 10 36 4 eRIPDk
32 10 36 4 eRIPDk
33 10 36 4 eGLPAk
34 10 36 4 eSLPDk
35 10 36 4 eSLPGk
36 9 32 4 aSFHTk
37 10 36 4 eQFQKk
//