Complet list of 1i26 hssp file
Complete list of 1i26.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1I26
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER TOXIN 06-FEB-01 1I26
COMPND MOL_ID: 1; MOLECULE: PTU-1; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: PEIRATES TURPIS; ORGANISM_TAXID: 18109
AUTHOR C.BERNARD,G.CORZO,A.MOSBAH,T.NAKAJIMA,H.DARBON
DBREF 1I26 A 1 34 UNP P58606 PTU1_PEITU 1 34
SEQLENGTH 34
NCHAIN 1 chain(s) in 1I26 data set
NALIGN 1
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : PTU1_PEITU 1I26 1.00 1.00 1 34 1 34 34 0 0 34 P58606 Toxin Ptu1 OS=Peirates turpis PE=1 SV=1
## ALIGNMENTS 1 - 1
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 160 2 0 A
2 2 A E - 0 0 113 2 0 E
3 3 A K - 0 0 167 2 0 K
4 4 A D S S+ 0 0 136 2 0 D
5 5 A a S S- 0 0 27 2 0 C
6 6 A I B -a 19 0A 12 2 0 I
7 7 A A > - 0 0 32 2 0 A
8 8 A P T 3 S+ 0 0 121 2 0 P
9 9 A G T 3 S+ 0 0 59 2 0 G
10 10 A A S < S- 0 0 11 2 0 A
11 11 A P + 0 0 91 2 0 P
12 12 A b > > + 0 0 0 2 0 C
13 13 A F T 3 5S+ 0 0 112 2 0 F
14 14 A G T 3 5S+ 0 0 74 2 0 G
15 15 A T T < 5S- 0 0 67 2 0 T
16 16 A D T 5S+ 0 0 160 2 0 D
17 17 A K < - 0 0 68 2 0 K
18 18 A P - 0 0 64 2 0 P
19 19 A c B -a 6 0A 16 2 0 C
20 20 A a S S+ 0 0 84 2 0 C
21 21 A N S > S- 0 0 79 2 0 N
22 22 A P T 3 S+ 0 0 131 2 0 P
23 23 A R T 3 S+ 0 0 196 2 0 R
24 24 A A < - 0 0 10 2 0 A
25 25 A W - 0 0 181 2 0 W
26 26 A b E -B 33 0B 47 2 0 C
27 27 A S E > > +B 32 0B 31 2 0 S
28 28 A S T 3 5 + 0 0 55 2 0 S
29 29 A Y T 3 5S+ 0 0 233 2 0 Y
30 30 A A T < 5S- 0 0 52 2 0 A
31 31 A N T 5S+ 0 0 68 2 0 N
32 32 A K E