Complet list of 1hy9 hssp file
Complete list of 1hy9.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1HY9
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER SIGNALING PROTEIN 18-JAN-01 1HY9
COMPND MOL_ID: 1; MOLECULE: COCAINE AND AMPHETAMINE REGULATED TRANSCRIPT PROT
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR S.LUDVIGSEN,L.THIM,A.M.BLOM,B.S.WULFF
DBREF 1HY9 A 49 89 UNP Q16568 CART_HUMAN 76 116
SEQLENGTH 41
NCHAIN 1 chain(s) in 1HY9 data set
NALIGN 109
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B7SNI6_ACORU 1.00 1.00 1 41 36 76 41 0 0 76 B7SNI6 CART (Fragment) OS=Acomys russatus PE=2 SV=1
2 : CART_BOVIN 1.00 1.00 1 41 76 116 41 0 0 116 Q68RJ9 Cocaine- and amphetamine-regulated transcript protein OS=Bos taurus GN=CARTPT PE=3 SV=1
3 : CART_HUMAN 1.00 1.00 1 41 76 116 41 0 0 116 Q16568 Cocaine- and amphetamine-regulated transcript protein OS=Homo sapiens GN=CARTPT PE=1 SV=1
4 : CART_MOUSE 1.00 1.00 1 41 89 129 41 0 0 129 P56388 Cocaine- and amphetamine-regulated transcript protein OS=Mus musculus GN=Cartpt PE=2 SV=2
5 : CART_PIG 1.00 1.00 1 39 28 66 39 0 0 66 Q9BDP9 Cocaine- and amphetamine-regulated transcript protein (Fragment) OS=Sus scrofa GN=CARTPT PE=3 SV=1
6 : CART_RAT 1.00 1.00 1 41 89 129 41 0 0 129 P49192 Cocaine- and amphetamine-regulated transcript protein OS=Rattus norvegicus GN=Cartpt PE=1 SV=1
7 : F6RT58_CALJA 1.00 1.00 1 41 75 115 41 0 0 115 F6RT58 Uncharacterized protein OS=Callithrix jacchus GN=CARTPT PE=4 SV=1
8 : F6WIA0_MACMU 1.00 1.00 1 41 76 116 41 0 0 116 F6WIA0 Cocaine-and amphetamine-regulated transcript protein OS=Macaca mulatta GN=CARTPT PE=4 SV=1
9 : F6YTZ6_HORSE 1.00 1.00 1 41 75 115 41 0 0 115 F6YTZ6 Uncharacterized protein (Fragment) OS=Equus caballus GN=CARTPT PE=4 SV=1
10 : G1NYQ2_MYOLU 1.00 1.00 1 41 75 115 41 0 0 115 G1NYQ2 Uncharacterized protein OS=Myotis lucifugus GN=CARTPT PE=4 SV=1
11 : G1QWY1_NOMLE 1.00 1.00 1 41 76 116 41 0 0 116 G1QWY1 Uncharacterized protein OS=Nomascus leucogenys GN=CARTPT PE=4 SV=1
12 : G1T6C3_RABIT 1.00 1.00 1 41 88 128 41 0 0 128 G1T6C3 Uncharacterized protein OS=Oryctolagus cuniculus GN=CARTPT PE=4 SV=1
13 : G3QQC4_GORGO 1.00 1.00 1 41 76 116 41 0 0 116 G3QQC4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101139718 PE=4 SV=1
14 : G3U9Z3_LOXAF 1.00 1.00 1 41 88 128 41 0 0 128 G3U9Z3 Uncharacterized protein OS=Loxodonta africana GN=CARTPT PE=4 SV=1
15 : G3UHV7_LOXAF 1.00 1.00 1 41 75 115 41 0 0 115 G3UHV7 Uncharacterized protein OS=Loxodonta africana GN=CARTPT PE=4 SV=1
16 : G5C0H4_HETGA 1.00 1.00 1 41 75 115 41 0 0 115 G5C0H4 Cocaine-and amphetamine-regulated transcript protein OS=Heterocephalus glaber GN=GW7_11003 PE=4 SV=1
17 : G7P7P4_MACFA 1.00 1.00 1 41 76 116 41 0 0 116 G7P7P4 Cocaine-and amphetamine-regulated transcript protein OS=Macaca fascicularis GN=EGM_15128 PE=4 SV=1
18 : H0WDR3_CAVPO 1.00 1.00 1 41 76 116 41 0 0 116 H0WDR3 Uncharacterized protein OS=Cavia porcellus GN=CARTPT PE=4 SV=1
19 : H0WZQ6_OTOGA 1.00 1.00 1 41 76 116 41 0 0 116 H0WZQ6 Uncharacterized protein OS=Otolemur garnettii GN=CARTPT PE=4 SV=1
20 : H2PFT2_PONAB 1.00 1.00 1 41 76 116 41 0 0 116 H2PFT2 Uncharacterized protein OS=Pongo abelii GN=CARTPT PE=4 SV=1
21 : H2R5L6_PANTR 1.00 1.00 1 41 76 116 41 0 0 116 H2R5L6 Uncharacterized protein OS=Pan troglodytes GN=CARTPT PE=4 SV=1
22 : H9FCL9_MACMU 1.00 1.00 1 41 46 86 41 0 0 86 H9FCL9 Cocaine-and amphetamine-regulated transcript protein preproprotein (Fragment) OS=Macaca mulatta GN=CARTPT PE=2 SV=1
23 : I3MEC5_SPETR 1.00 1.00 1 41 89 129 41 0 0 129 I3MEC5 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=CARTPT PE=4 SV=1
24 : L5KKZ4_PTEAL 1.00 1.00 1 41 91 131 41 0 0 131 L5KKZ4 Cocaine-and amphetamine-regulated transcript protein OS=Pteropus alecto GN=PAL_GLEAN10024874 PE=4 SV=1
25 : L8IYF5_9CETA 1.00 1.00 1 41 76 116 41 0 0 116 L8IYF5 Cocaine-and amphetamine-regulated transcript protein OS=Bos mutus GN=M91_09422 PE=4 SV=1
26 : Q307W6_PIG 1.00 1.00 1 41 76 116 41 0 0 116 Q307W6 Cocaine- and amphetamine-regulated transcript protein OS=Sus scrofa GN=CART PE=4 SV=2
27 : Q3UY31_MOUSE 1.00 1.00 1 41 76 116 41 0 0 116 Q3UY31 Putative uncharacterized protein OS=Mus musculus GN=Cartpt PE=4 SV=1
28 : Q3UYI4_MOUSE 1.00 1.00 1 41 76 116 41 0 0 116 Q3UYI4 Putative uncharacterized protein OS=Mus musculus GN=Cartpt PE=4 SV=1
29 : S7ME57_MYOBR 1.00 1.00 1 41 76 116 41 0 0 116 S7ME57 Cocaine-and amphetamine-regulated transcript protein OS=Myotis brandtii GN=D623_10035907 PE=4 SV=1
30 : S9WZJ1_9CETA 1.00 1.00 1 41 122 162 41 0 0 162 S9WZJ1 Cocaine-and amphetamine-regulated transcript protein OS=Camelus ferus GN=CB1_000781016 PE=4 SV=1
31 : U3ERY5_CALJA 1.00 1.00 1 41 76 116 41 0 0 116 U3ERY5 Cocaine-and amphetamine-regulated transcript protein preproprotein OS=Callithrix jacchus GN=CARTPT PE=4 SV=1
32 : W5P5A1_SHEEP 1.00 1.00 1 41 50 90 41 0 0 90 W5P5A1 Uncharacterized protein OS=Ovis aries GN=CARTPT PE=4 SV=1
33 : L8Y205_TUPCH 0.98 1.00 1 41 76 116 41 0 0 116 L8Y205 Cocaine-and amphetamine-regulated transcript protein OS=Tupaia chinensis GN=TREES_T100016562 PE=4 SV=1
34 : M4M7V6_CHICK 0.98 1.00 1 41 71 111 41 0 0 111 M4M7V6 CART OS=Gallus gallus GN=CART PE=4 SV=1
35 : V8P7X8_OPHHA 0.98 1.00 1 41 71 111 41 0 0 111 V8P7X8 Cocaine-and amphetamine-regulated transcript protein (Fragment) OS=Ophiophagus hannah GN=CARTPT PE=4 SV=1
36 : F6T7Q6_MONDO 0.95 0.98 1 41 74 114 41 0 0 114 F6T7Q6 Uncharacterized protein OS=Monodelphis domestica GN=CARTPT PE=4 SV=2
37 : G1KJH0_ANOCA 0.95 1.00 1 41 72 112 41 0 0 112 G1KJH0 Uncharacterized protein OS=Anolis carolinensis GN=CARTPT PE=4 SV=2
38 : G3VWV0_SARHA 0.95 0.98 1 41 74 114 41 0 0 114 G3VWV0 Uncharacterized protein OS=Sarcophilus harrisii GN=CARTPT PE=4 SV=1
39 : B3DM32_XENTR 0.93 0.98 1 41 72 112 41 0 0 112 B3DM32 LOC100170597 protein (Fragment) OS=Xenopus tropicalis GN=LOC100170597 PE=2 SV=1
40 : D2H2V1_AILME 0.93 1.00 1 41 76 116 41 0 0 116 D2H2V1 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100466311 PE=4 SV=1
41 : F6S904_XENTR 0.93 0.98 1 41 86 126 41 0 0 126 F6S904 Uncharacterized protein OS=Xenopus tropicalis GN=cartpt PE=4 SV=1
42 : F6Z974_XENTR 0.93 0.98 1 41 73 113 41 0 0 113 F6Z974 Uncharacterized protein OS=Xenopus tropicalis GN=cartpt PE=4 SV=1
43 : J9NW08_CANFA 0.93 1.00 1 41 76 116 41 0 0 116 J9NW08 Uncharacterized protein OS=Canis familiaris GN=CARTPT PE=4 SV=1
44 : M3VZP0_FELCA 0.93 1.00 1 41 76 116 41 0 0 116 M3VZP0 Uncharacterized protein OS=Felis catus GN=CARTPT PE=4 SV=1
45 : M3YSJ3_MUSPF 0.93 1.00 1 41 76 116 41 0 0 116 M3YSJ3 Uncharacterized protein OS=Mustela putorius furo GN=CARTPT PE=4 SV=1
46 : U6DU81_NEOVI 0.93 1.00 1 41 76 116 41 0 0 116 U6DU81 Cocaine-and amphetamine-regulated transcript protein OS=Neovison vison GN=CART PE=4 SV=1
47 : H3AHL3_LATCH 0.88 0.93 1 41 79 119 41 0 0 119 H3AHL3 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
48 : E3WET5_ORYLA 0.85 0.93 1 41 85 125 41 0 0 125 E3WET5 Cocaine-and amphetamine-regulated transcript ch3 OS=Oryzias latipes GN=cart ch3 PE=2 SV=1
49 : H2L350_ORYLA 0.85 0.93 1 41 85 125 41 0 0 125 H2L350 Uncharacterized protein OS=Oryzias latipes GN=LOC100533497 PE=4 SV=1
50 : H2UD87_TAKRU 0.85 0.90 1 41 23 63 41 0 0 63 H2UD87 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101080060 PE=4 SV=1
51 : H3APP6_LATCH 0.85 0.93 2 41 73 112 40 0 0 112 H3APP6 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
52 : Q4T695_TETNG 0.85 0.90 1 41 21 61 41 0 0 61 Q4T695 Chromosome undetermined SCAF8850, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=CARTPT (2 of 2) PE=4 SV=1
53 : B9X0J5_SALSA 0.83 0.93 1 41 78 118 41 0 0 118 B9X0J5 Cocaine-and amphetamine-regulated transcript OS=Salmo salar GN=CART PE=4 SV=1
54 : C1BJA8_OSMMO 0.83 0.90 1 41 78 118 41 0 0 118 C1BJA8 Cocaine-and amphetamine-regulated transcript protein OS=Osmerus mordax GN=CART PE=4 SV=1
55 : C1J7V9_PSEAM 0.83 0.90 1 41 51 91 41 0 0 91 C1J7V9 CART OS=Pseudopleuronectes americanus GN=CART PE=4 SV=1
56 : I3JIZ2_ORENI 0.83 0.90 1 41 86 126 41 0 0 126 I3JIZ2 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100708027 PE=4 SV=1
57 : M4AUX6_XIPMA 0.83 0.90 1 41 90 130 41 0 0 130 M4AUX6 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
58 : V9LFY2_CALMI 0.83 0.95 1 41 71 111 41 0 0 111 V9LFY2 Cocaine-and amphetamine-regulated transcript OS=Callorhynchus milii PE=4 SV=1
59 : W5K2D1_ASTMX 0.83 0.93 1 41 75 115 41 0 0 115 W5K2D1 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
60 : W5NA06_LEPOC 0.83 0.90 1 41 72 112 41 0 0 112 W5NA06 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
61 : W6CY63_ASTMX 0.83 0.93 1 41 75 115 41 0 0 115 W6CY63 Cocaine and amphetamine regulated protein OS=Astyanax mexicanus PE=4 SV=1
62 : Q68EU1_XENLA 0.82 0.93 2 41 67 106 40 0 0 106 Q68EU1 MGC84672 protein OS=Xenopus laevis GN=cartpt PE=4 SV=1
63 : A1BLV3_GADMO 0.80 0.90 1 41 78 118 41 0 0 118 A1BLV3 Cocaine-and amphetamine-regulated transcript protein OS=Gadus morhua GN=CART PE=4 SV=1
64 : G7ZL00_CYPCA 0.80 0.93 1 41 80 120 41 0 0 120 G7ZL00 Cocaine and amphetamine-regulated transcript II (Precursor) OS=Cyprinus carpio GN=cartii PE=2 SV=1
65 : K0BRG4_SILME 0.80 0.93 1 41 78 118 41 0 0 118 K0BRG4 Prepro-CART OS=Silurus meridionalis PE=4 SV=1
66 : Q568S2_DANRE 0.80 0.93 1 41 80 120 41 0 0 120 Q568S2 Cocaine-and amphetamine-regulated transcript protein 2a OS=Danio rerio GN=zgc:110124 PE=2 SV=1
67 : Q8UUH1_CARAU 0.80 0.93 1 41 80 120 41 0 0 120 Q8UUH1 Cocaine and amphetamine regulated transcript protein type II (Precursor) OS=Carassius auratus GN=CART PE=2 SV=1
68 : Q4RMR3_TETNG 0.79 0.87 4 41 25 62 38 0 0 62 Q4RMR3 Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00031914001 PE=4 SV=1
69 : E3WET7_ORYLA 0.78 0.90 1 41 66 106 41 0 0 106 E3WET7 Cocaine-and amphetamine-regulated transcript ch6 OS=Oryzias latipes GN=cart ch6 PE=4 SV=1
70 : M3ZWK8_XIPMA 0.78 0.90 1 41 74 114 41 0 0 114 M3ZWK8 Uncharacterized protein (Fragment) OS=Xiphophorus maculatus PE=4 SV=1
71 : Q0IHY0_XENTR 0.78 0.93 1 41 74 114 41 0 0 114 Q0IHY0 Uncharacterized protein OS=Xenopus tropicalis GN=MGC145330 PE=4 SV=1
72 : E3WEU0_ORYLA 0.77 0.88 2 41 68 107 40 0 0 107 E3WEU0 Cocaine-and amphetamine-regulated transcript ch22 OS=Oryzias latipes GN=cart ch22 PE=4 SV=1
73 : G3P5N6_GASAC 0.77 0.85 2 41 68 107 40 0 0 107 G3P5N6 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
74 : M4AF09_XIPMA 0.77 0.87 2 40 68 106 39 0 0 107 M4AF09 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
75 : D2N152_CYPCA 0.76 0.90 1 41 72 112 41 0 0 112 D2N152 Cocaine-and amphetamine-regulated transcript (Fragment) OS=Cyprinus carpio GN=cart PE=2 SV=1
76 : F1LLQ6_DANRE 0.76 0.90 1 41 77 117 41 0 0 117 F1LLQ6 Cocaine-and amphetamine-regulated transcript protein 2b OS=Danio rerio GN=cart4 PE=4 SV=1
77 : F1QZX9_DANRE 0.76 0.90 1 41 72 112 41 0 0 112 F1QZX9 Uncharacterized protein (Fragment) OS=Danio rerio GN=LOC557301 PE=4 SV=1
78 : G7ZKZ9_CYPCA 0.76 0.90 1 41 77 117 41 0 0 117 G7ZKZ9 Cocaine and amphetamine-regulated transcript I (Precursor) OS=Cyprinus carpio GN=carti PE=4 SV=1
79 : H3BZJ5_TETNG 0.76 0.90 1 41 67 107 41 0 0 107 H3BZJ5 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis GN=CARTPT (1 of 2) PE=4 SV=1
80 : M7AS80_CHEMY 0.76 0.88 1 41 65 105 41 0 0 105 M7AS80 Cocaine-and amphetamine-regulated transcript protein OS=Chelonia mydas GN=UY3_14687 PE=4 SV=1
81 : Q8UV11_CARAU 0.76 0.90 1 41 80 120 41 0 0 120 Q8UV11 Cocaine and amphetamine regulated transcript type I protein OS=Carassius auratus PE=4 SV=1
82 : Q8UVZ2_CARAU 0.76 0.90 1 41 77 117 41 0 0 117 Q8UVZ2 Cocaine and amphetamine regulated transcript protein type I (Precursor) OS=Carassius auratus GN=CART PE=4 SV=1
83 : I3IXU1_ORENI 0.75 0.85 2 41 73 112 40 0 0 112 I3IXU1 Uncharacterized protein OS=Oreochromis niloticus GN=CARTPT (1 of 3) PE=4 SV=1
84 : M4A6V6_XIPMA 0.75 0.85 2 41 69 108 40 0 0 108 M4A6V6 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
85 : Q4TBI3_TETNG 0.74 0.91 7 41 51 85 35 0 0 85 Q4TBI3 Chromosome 13 SCAF7124, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00003748001 PE=4 SV=1
86 : F1LLQ4_DANRE 0.73 0.85 2 41 66 105 40 0 0 105 F1LLQ4 Cocaine-and amphetamine-regulated transcript protein 1 OS=Danio rerio GN=cart4 PE=4 SV=1
87 : F1QMD8_DANRE 0.73 0.85 2 41 136 175 40 0 0 175 F1QMD8 Uncharacterized protein OS=Danio rerio GN=cart1 PE=4 SV=1
88 : H3AEB4_LATCH 0.73 0.95 2 41 66 105 40 0 0 105 H3AEB4 Uncharacterized protein (Fragment) OS=Latimeria chalumnae GN=CARTPT PE=4 SV=1
89 : Q1LYJ6_DANRE 0.73 0.85 2 41 71 110 40 0 0 110 Q1LYJ6 Uncharacterized protein (Fragment) OS=Danio rerio GN=cart1 PE=4 SV=1
90 : U5IMA8_9LABR 0.73 0.85 1 41 83 123 41 0 0 123 U5IMA8 Cocaine and amphetamine regulated transcript OS=Tautogolabrus adspersus GN=CART PE=2 SV=1
91 : U3KKX1_FICAL 0.72 0.82 2 40 1 39 39 0 0 40 U3KKX1 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=CARTPT PE=4 SV=1
92 : W5MQ38_LEPOC 0.71 0.91 7 40 82 115 34 0 0 116 W5MQ38 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
93 : W5NA05_LEPOC 0.71 0.95 4 41 71 108 38 0 0 108 W5NA05 Uncharacterized protein OS=Lepisosteus oculatus GN=CARTPT (2 of 3) PE=4 SV=1
94 : I3JK19_ORENI 0.70 0.88 2 41 68 107 40 0 0 107 I3JK19 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100701394 PE=4 SV=1
95 : M4AYB1_XIPMA 0.70 0.86 5 41 73 109 37 0 0 109 M4AYB1 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
96 : V9LGG3_CALMI 0.70 0.95 2 41 71 110 40 0 0 110 V9LGG3 Cocaine-and amphetamine-regulated transcript protein-like protein OS=Callorhynchus milii PE=4 SV=1
97 : E3WET6_ORYLA 0.65 0.85 2 41 68 107 40 0 0 107 E3WET6 Cocaine-and amphetamine-regulated transcript ch4 OS=Oryzias latipes GN=cart ch4 PE=4 SV=1
98 : H9H2H2_MELGA 0.64 0.79 2 40 24 62 39 0 0 63 H9H2H2 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=CARTPT PE=4 SV=1
99 : B5XCF9_SALSA 0.62 0.89 4 40 77 113 37 0 0 114 B5XCF9 Cocaine-and amphetamine-regulated transcript protein OS=Salmo salar GN=CART PE=4 SV=1
100 : E3WET8_ORYLA 0.62 0.88 2 41 97 136 40 0 0 136 E3WET8 Cocaine-and amphetamine-regulated transcript ch9 OS=Oryzias latipes GN=cart ch9 PE=2 SV=1
101 : E3WET9_ORYLA 0.62 0.89 4 40 70 106 37 0 0 107 E3WET9 Cocaine-and amphetamine-regulated transcript ch11 OS=Oryzias latipes GN=cart ch11 PE=4 SV=1
102 : M4AUX5_XIPMA 0.62 0.88 2 41 68 107 40 0 0 107 M4AUX5 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
103 : M4M646_CHICK 0.62 0.77 2 40 74 112 39 0 0 113 M4M646 CARTL OS=Gallus gallus GN=CARTL PE=4 SV=1
104 : M4M663_CHICK 0.62 0.77 2 40 50 88 39 0 0 89 M4M663 CARTL transcript variant 1 OS=Gallus gallus GN=CARTL PE=4 SV=1
105 : Q1L893_DANRE 0.62 0.89 4 40 68 104 37 0 0 105 Q1L893 Cocaine-and amphetamine-regulated transcript protein 3 OS=Danio rerio GN=cart4 PE=4 SV=1
106 : Q4SGG2_TETNG 0.62 0.90 2 41 65 104 40 0 0 104 Q4SGG2 Chromosome undetermined SCAF14596, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00018651001 PE=4 SV=1
107 : W5LMP3_ASTMX 0.62 0.86 4 40 25 61 37 0 0 62 W5LMP3 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
108 : W5UAI4_ICTPU 0.59 0.89 4 40 68 104 37 0 0 105 W5UAI4 Cocaine-and amphetamine-regulated transcript protein OS=Ictalurus punctatus GN=CARTPT PE=4 SV=1
109 : C1J7W0_LEUOC 0.54 0.73 1 41 71 110 41 1 1 110 C1J7W0 CART OS=Leucoraja ocellata GN=CART PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 49 A Y 0 0 274 79 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYYYYYYYYYYYYFFFY YFFFFFFFFF FFFFF YY
2 50 A G + 0 0 64 100 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GG
3 51 A Q + 0 0 159 100 62 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQWQQQQQQQQQQWQQQQQ QQ
4 52 A V - 0 0 62 107 23 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVVVVVVVLVV
5 53 A P - 0 0 87 108 1 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
6 54 A M B -a 26 0A 152 108 82 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMKMKMMMMMMMMMMMTSTTTTTTLMTMSTMMMMSSS
7 55 A a - 0 0 8 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 56 A D - 0 0 92 110 23 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDHDDHHHHDDDDDDDDDDDDDDDDDDDDDDDD
9 57 A A S S+ 0 0 49 110 66 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVVVAVVVVIVIVVVAILVLLALL
10 58 A G S S+ 0 0 37 110 5 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
11 59 A E S S- 0 0 112 110 7 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 60 A Q + 0 0 54 110 47 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQRRRRQQQQQQQQQQQQQQQQQQQQQPHH
13 61 A b S S+ 0 0 0 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14 62 A A E -B 23 0B 5 110 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 63 A V E -B 22 0B 45 110 23 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVILIVVVVVVVVVVVVVVVVVVVVVVVVIIIIIVII
16 64 A R E +B 21 0B 108 110 12 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
17 65 A K + 0 0 96 110 40 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
18 66 A G S S- 0 0 92 110 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
19 67 A A S S+ 0 0 97 110 47 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAPPAAAAAAAAAAAAAAAASASAASSSSASS
20 68 A R S S- 0 0 204 110 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
21 69 A I E -B 16 0B 72 110 11 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
22 70 A G E -B 15 0B 20 110 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 71 A K E +B 14 0B 107 110 19 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKTKK
24 72 A L - 0 0 67 110 19 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMLMMMMMMLMMMLMMMMMLMM
25 73 A a - 0 0 13 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 74 A D B -a 6 0A 49 110 31 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDNDDDDDSDD
27 75 A c - 0 0 19 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 76 A P > - 0 0 43 110 37 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
29 77 A R T 3 S+ 0 0 219 110 26 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
30 78 A G T 3 S+ 0 0 80 110 15 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGRRGGGGGGGGGGGGGGGSGGGGGGGGGGGG
31 79 A T < - 0 0 37 110 52 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSAAATAAAAAATAAATSAAAATAA
32 80 A S - 0 0 67 109 88 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSTSSTTTTIFFFSFFFFFFGFFFAFFFLFSFF
33 81 A b B -C 40 0C 53 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
34 82 A N > - 0 0 37 110 7 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
35 83 A S T 4 S+ 0 0 40 110 81 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSTSTSTTSSSSFFFFFFSFFFFFFFFFFFFFFFFF
36 84 A F T 4 S+ 0 0 147 110 23 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYFYFFFFFFFFYFFFFFYFF
37 85 A L T 4 S- 0 0 96 110 20 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLLLLLILLLLLVLL
38 86 A L < + 0 0 21 110 7 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
39 87 A K S S- 0 0 57 110 15 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
40 88 A c B C 33 0C 7 109 0 CCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
41 89 A L 0 0 123 98 11 LLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
## ALIGNMENTS 71 - 109
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 49 A Y 0 0 274 79 4 F FFFFYYFF F Y
2 50 A G + 0 0 64 100 2 GGGGGGGGGNGGGG GGGGGG G GGG G GGG G G
3 51 A Q + 0 0 159 100 62 QWWWRRRRQQRRWW WWQWQA W QWR Y SRR S Q
4 52 A V - 0 0 62 107 23 VLLLVVVVVVVVLL VVIVVA IL ILVILIIVVIIIIG
5 53 A P - 0 0 87 108 1 PPPPPPPPPPPPPP PPPPPP PAPPPPPPPPPPPPPPP
6 54 A M B -a 26 0A 152 108 82 VSSPTTTTSKTTSS SSLSRQ MAAKPSRVRLSSRLRRQ
7 55 A a - 0 0 8 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 56 A D - 0 0 92 110 23 DDDDDDDDDSDDDDDDDADDEDDDDDNQDEDGHHDGDDN
9 57 A A S S+ 0 0 49 110 66 VAAAVVVVLMVVAALAAIAVPVVAPITLVPVMLLVLVVI
10 58 A G S S+ 0 0 37 110 5 GGGGGGGGGGGGGGGGGGGGRGGGGGSGGGGGGGGGGGG
11 59 A E S S- 0 0 112 110 7 EEEEEEEEEQEEEEEEEEEEEEDEEDEEEEEGEEEDEED
12 60 A Q + 0 0 54 110 47 QPPQQQQQHAQQPPHQQRQQPRRQQRQPRQRRPPRRRRM
13 61 A b S S+ 0 0 0 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14 62 A A E -B 23 0B 5 110 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 63 A V E -B 22 0B 45 110 23 VVVVIIIIIVIIVVIVVVVVVVLILIVVMLMVVVMRLMV
16 64 A R E +B 21 0B 108 110 12 RRRRRRRRRKRRRRRRRKRRRKRRRKRRKRKKRRKRKKR
17 65 A K + 0 0 96 110 40 KKKKKKKKKKKKKKKKKQKKRHQKKQKVHKHFVVHFHHK
18 66 A G S S- 0 0 92 110 2 AGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGG
19 67 A A S S+ 0 0 97 110 47 SAAASSSSSASSAASSSPSSAPPSSPAAPSPPAAPPPPP
20 68 A R S S- 0 0 204 110 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
21 69 A I E -B 16 0B 72 110 11 IIIIIIIIIIIIIIIFFIFIIIIIIIVFIIIIYYIIIII
22 70 A G E -B 15 0B 20 110 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGW
23 71 A K E +B 14 0B 107 110 19 KTTKKKKKKRKKTTKKKKKRKKKKKKKKRKRKKKRKRRR
24 72 A L - 0 0 67 110 19 LLLLMMMMMLMMLLMLLLLMLLLLLLLRLLLLRRLLLLT
25 73 A a - 0 0 13 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 74 A D B -a 6 0A 49 110 31 NGSGDDDDDDDDSSDSSDSDSDDGDDGSDDDDSSDDDDN
27 75 A c - 0 0 19 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 76 A P > - 0 0 43 110 37 PPPPPPPPPPPPPPPPPSPPPLAPSAPPLSLGPPMAMML
29 77 A R T 3 S+ 0 0 219 110 26 RRRRRRRRRRRRRRRGGRGRRRRRLRRPRLRRPPRRRRS
30 78 A G T 3 S+ 0 0 80 110 15 GGGGGGGGGGGGGGGGGGGRGGGGPGGGGPGGGGGGGGS
31 79 A T < - 0 0 37 110 52 ATTTAAAAAAAATTATTSTATASTRTMTTRTATTTSTSK
32 80 A S - 0 0 67 109 88 VSSLFFFFLTFFTALAASAFSAIVTTESATANAAAGVA.
33 81 A b B -C 40 0C 53 110 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
34 82 A N > - 0 0 37 110 7 NNNNNNNNNNNNNNNSSNSNNNNNNNDNNNNNNNNNNNN
35 83 A S T 4 S+ 0 0 40 110 81 FFFFYYYYISYYFFIFFSFFLTSFSSFLTSTSLLTSTTY
36 84 A F T 4 S+ 0 0 147 110 23 FYYSFFFFIFFFYYISSFSCFFFSFFSYFFFYYYFYFFF
37 85 A L T 4 S- 0 0 96 110 20 LVVVLLLLLLLLVVLIILILILLVLLIIFLFLVVFLFFL
38 86 A L < + 0 0 21 110 7 LLLLLLLLLLLLLLLLLLLLLLLLHLLLLHLLLLLLLLF
39 87 A K S S- 0 0 57 110 15 KKKQKKKKKKKKKKKKKKKKKRKKRKKRRRRKRRRKRRK
40 88 A c B C 33 0C 7 109 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
41 89 A L 0 0 123 98 11 LLL LLLLLLLLLLLLLILL ILLIL F I I V
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 49 A 0 0 0 0 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 79 0 0 0.634 21 0.96
2 50 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 1 0 100 0 0 0.056 1 0.98
3 51 A 0 0 0 0 0 12 1 0 1 0 2 0 0 0 9 0 75 0 0 0 100 0 0 0.857 28 0.38
4 52 A 79 9 9 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 107 0 0 0.713 23 0.77
5 53 A 0 0 0 0 0 0 0 0 1 99 0 0 0 0 0 0 0 0 0 0 108 0 0 0.053 1 0.98
6 54 A 2 4 0 51 0 0 0 0 2 2 15 14 0 0 6 4 2 0 0 0 108 0 0 1.601 53 0.17
7 55 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
8 56 A 0 0 0 0 0 0 0 2 1 0 1 0 0 6 0 0 1 2 2 85 110 0 0 0.656 21 0.77
9 57 A 25 10 5 2 0 0 0 0 54 3 0 1 0 0 0 0 0 0 0 0 110 0 0 1.285 42 0.33
10 58 A 0 0 0 0 0 0 0 98 0 0 1 0 0 0 1 0 0 0 0 0 110 0 0 0.103 3 0.95
11 59 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 95 0 4 110 0 0 0.259 8 0.93
12 60 A 0 0 0 1 0 0 0 0 1 8 0 0 0 4 15 0 72 0 0 0 110 0 0 0.929 31 0.53
13 61 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
14 62 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
15 63 A 74 5 17 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 110 0 0 0.832 27 0.77
16 64 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 9 0 0 0 0 110 0 0 0.305 10 0.87
17 65 A 3 0 0 0 2 0 0 0 0 0 0 0 0 5 1 86 3 0 0 0 110 0 0 0.597 19 0.59
18 66 A 0 0 0 0 0 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0.091 3 0.98
19 67 A 0 0 0 0 0 0 0 0 65 14 22 0 0 0 0 0 0 0 0 0 110 0 0 0.886 29 0.53
20 68 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 110 0 0 0.000 0 1.00
21 69 A 1 0 94 0 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0.298 9 0.88
22 70 A 0 0 0 0 0 1 0 99 0 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0.052 1 0.94
23 71 A 0 0 0 0 0 0 0 0 0 0 0 5 0 0 7 88 0 0 0 0 110 0 0 0.442 14 0.80
24 72 A 0 71 0 25 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 0 110 0 0 0.733 24 0.80
25 73 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
26 74 A 0 0 0 0 0 0 0 4 0 0 10 0 0 0 0 0 0 0 4 83 110 0 0 0.628 20 0.68
27 75 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
28 76 A 0 4 0 3 0 0 0 1 3 87 3 0 0 0 0 0 0 0 0 0 110 0 0 0.577 19 0.63
29 77 A 0 2 0 0 0 0 0 3 0 3 1 0 0 0 92 0 0 0 0 0 110 0 0 0.390 13 0.74
30 78 A 0 0 0 0 0 0 0 93 0 2 2 0 0 0 4 0 0 0 0 0 110 0 0 0.336 11 0.84
31 79 A 0 0 0 1 0 0 0 0 28 0 5 63 0 0 2 1 0 0 0 0 110 1 0 0.966 32 0.48
32 80 A 3 4 2 0 23 0 0 2 11 0 44 10 0 0 0 0 0 1 1 0 109 0 0 1.626 54 0.12
33 81 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 110 0 0 0.000 0 1.00
34 82 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 96 1 110 0 0 0.177 5 0.92
35 83 A 0 4 2 0 32 0 6 0 0 0 46 10 0 0 0 0 0 0 0 0 110 0 0 1.320 44 0.19
36 84 A 0 0 2 0 80 0 12 0 0 0 5 0 1 0 0 0 0 0 0 0 110 0 0 0.705 23 0.76
37 85 A 8 80 7 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0.714 23 0.79
38 86 A 0 97 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 110 0 0 0.142 4 0.93
39 87 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 89 1 0 0 0 110 0 0 0.376 12 0.84
40 88 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 109 0 0 0.000 0 1.00
41 89 A 1 93 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.314 10 0.89
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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