Complet list of 1hvw hssp file
Complete list of 1hvw.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1HVW
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER TOXIN 08-JAN-01 1HVW
COMPND MOL_ID: 1; MOLECULE: OMEGA-ATRACOTOXIN-HV1A; CHAIN: A; SYNONYM: OMEGA-
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY
AUTHOR J.I.FLETCHER,G.F.KING
DBREF 1HVW A 1 25 UNP P56207 TOT1A_HADVE 4 37
SEQLENGTH 25
NCHAIN 1 chain(s) in 1HVW data set
NALIGN 28
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TOT1A_HADVE 1HVW 1.00 1.00 1 20 4 23 20 0 0 37 P56207 Omega-hexatoxin-Hv1a OS=Hadronyche versuta PE=1 SV=1
2 : TOT1B_HADVE 1.00 1.00 1 20 4 23 20 0 0 37 P81595 Omega-hexatoxin-Hv1b OS=Hadronyche versuta PE=1 SV=1
3 : TOT1C_HADVE 1.00 1.00 1 20 4 23 20 0 0 37 P81596 Omega-hexatoxin-Hv1c OS=Hadronyche versuta PE=1 SV=1
4 : TOT1D_ATRRO 1.00 1.00 1 20 45 64 20 0 0 78 A5A3H3 Omega-hexatoxin-Ar1d OS=Atrax robustus PE=2 SV=1
5 : TOT1E_HADVE 1.00 1.00 1 20 4 23 20 0 0 37 P81598 Omega-hexatoxin-Hv1e OS=Hadronyche versuta PE=1 SV=1
6 : TOT1F_ATRRO 1.00 1.00 1 20 45 64 20 0 0 78 A5A3H5 Omega-hexatoxin-Ar1f OS=Atrax robustus PE=2 SV=1
7 : S0F1M4_9ARAC 0.95 1.00 1 20 50 69 20 0 0 83 S0F1M4 Omega-hexatoxin-Hvn1a insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
8 : S0F1N0_HADIN 0.95 1.00 1 20 46 65 20 0 0 79 S0F1N0 Omega-hexatoxin-Hi1e insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
9 : S0F1N1_9ARAC 0.95 1.00 1 20 51 70 20 0 0 84 S0F1N1 Omega-hexatoxin-Hvn1b_3 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
10 : S0F1N7_9ARAC 0.95 1.00 1 20 51 70 20 0 0 84 S0F1N7 Omega-hexatoxin-Hvn1b_4 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
11 : S0F204_HADIN 0.95 1.00 1 20 46 65 20 0 0 79 S0F204 Omega-hexatoxin-Hi1f insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
12 : S0F205_9ARAC 0.95 1.00 1 20 51 70 20 0 0 84 S0F205 Omega-hexatoxin-Hvn1b_2 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
13 : S0F211_9ARAC 0.95 1.00 1 20 51 70 20 0 0 84 S0F211 Omega-hexatoxin-Hvn1b_1 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
14 : S0F212_9ARAC 0.95 1.00 1 20 51 70 20 0 0 84 S0F212 Omega-hexatoxin-Hvn1b_6 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
15 : TOT1B_HADFO 0.95 0.95 1 20 4 23 20 0 0 37 P0C2L4 Omega-hexatoxin-Hf1a OS=Hadronyche formidabilis PE=1 SV=1
16 : TOT1B_HADIN 0.95 1.00 1 20 4 23 20 0 0 37 P0C2L6 Omega-hexatoxin-Hi1b OS=Hadronyche infensa PE=1 SV=1
17 : TOT1C_ATRRO 0.95 0.95 1 20 45 64 20 0 0 78 A5A3H2 Omega-hexatoxin-Ar1c OS=Atrax robustus PE=2 SV=1
18 : TOT1D_HADVE 0.95 1.00 1 20 4 23 20 0 0 37 P81597 Omega-hexatoxin-Hv1d OS=Hadronyche versuta PE=1 SV=1
19 : TOT1E_ATRRO 0.95 1.00 1 20 45 64 20 0 0 78 A5A3H4 Omega-hexatoxin-Ar1e OS=Atrax robustus PE=2 SV=1
20 : S0F1N6_HADIN 0.90 1.00 1 20 46 65 20 0 0 79 S0F1N6 Omega-hexatoxin-Hi1d insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
21 : TOT1A_ATRRO 0.90 0.95 1 20 52 71 20 0 0 85 P83580 Omega-hexatoxin-Ar1a OS=Atrax robustus PE=1 SV=2
22 : TOT1F_HADVE 0.80 0.85 1 20 4 23 20 0 0 37 P81599 Omega-hexatoxin-Hv1f OS=Hadronyche versuta PE=1 SV=1
23 : TOT1B_ATRRO 0.79 0.89 1 19 40 58 19 0 0 73 A5A3H1 Omega-hexatoxin-Ar1b OS=Atrax robustus PE=2 SV=1
24 : TOT1C_HADIN 0.75 0.90 1 20 4 23 20 0 0 37 P0C2L7 Omega-hexatoxin-Hi1c OS=Hadronyche infensa PE=1 SV=1
25 : S0F1M8_HADIN 0.70 0.90 1 20 45 64 20 0 0 78 S0F1M8 Omega-hexatoxin-Hi1g_2 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
26 : S0F1N4_HADIN 0.70 0.90 1 20 45 64 20 0 0 78 S0F1N4 Omega-hexatoxin-Hi1g_1 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
27 : S0F215_HADIN 0.70 0.90 1 20 45 64 20 0 0 78 S0F215 Omega-hexatoxin-Hi1g_3 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
28 : TOT1A_HADIN 0.70 0.90 1 20 3 22 20 0 0 36 P0C2L5 Omega-hexatoxin-Hi1a OS=Hadronyche infensa PE=1 SV=1
## ALIGNMENTS 1 - 28
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 131 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A I B -a 14 0A 51 29 49 IIIIIIIIIIIIIIIIIIIIIITITTTT
3 3 A P > - 0 0 75 29 13 PPPPPPPPPPPPPPRPPPPPPPPRPPPP
4 4 A S T 3 S+ 0 0 78 29 55 SSSSSSSTSSTSSSSTSSSTSSTTTTTT
5 5 A G T 3 S+ 0 0 50 29 30 GGGGGGGGGGGGGGGGGGGGGGGDDDDD
6 6 A Q S < S- 0 0 107 29 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ
7 7 A P B -B 23 0B 83 29 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPP
8 8 A b - 0 0 21 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
9 9 A P S S- 0 0 85 29 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPP
10 10 A Y S > S- 0 0 188 29 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYY
11 11 A N T 3 S+ 0 0 93 29 35 NNNNNNNNNNNNNNNNNNNNNSNNDDDH
12 12 A E T 3 S+ 0 0 138 29 8 EEEEEEEEEEEEEEEEEEEEEKEEEEEE
13 13 A N S < S+ 0 0 81 29 65 NNNNNNNNNNNNNNNNNNNNHYSSSSSS
14 14 A c B S-a 2 0A 11 29 2 CCCCCCCCCCCCCCCCYCCCCCCCCCCC
15 15 A a S S+ 0 0 67 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A S S S- 0 0 57 29 6 SSSSSSSSSSSSSSSSSSSNSSSSSSSS
17 17 A Q + 0 0 119 29 77 QQQQQQKQKKQKKKQQQKKQGGGGGGGG
18 18 A S - 0 0 55 29 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSS
19 19 A b E +C 24 0B 30 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A T E > -C 23 0B 61 28 0 TTTTTTTTTTTTTTTTTTTTTT TTTTT
21 21 A G T 3 S- 0 0 79 1 0
22 22 A G T 3 S+ 0 0 51 1 0
23 23 A R E < S-BC 7 20B 108 1 0
24 24 A c E C 0 19B 0 1 0
25 25 A D 0 0 71 1 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
2 2 A 0 0 83 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 29 0 0 0.460 15 0.51
3 3 A 0 0 0 0 0 0 0 0 0 93 0 0 0 0 7 0 0 0 0 0 29 0 0 0.251 8 0.86
4 4 A 0 0 0 0 0 0 0 0 0 0 66 34 0 0 0 0 0 0 0 0 29 0 0 0.644 21 0.45
5 5 A 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 0 0 17 29 0 0 0.460 15 0.69
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 29 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 3 0 0 3 0 0 0 0 83 10 29 0 0 0.624 20 0.64
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 97 0 0 29 0 0 0.150 5 0.91
13 13 A 0 0 0 0 0 0 3 0 0 0 21 0 0 3 0 0 0 0 72 0 29 0 0 0.792 26 0.34
14 14 A 0 0 0 0 0 0 3 0 0 0 0 0 97 0 0 0 0 0 0 0 29 0 0 0.150 5 0.98
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 3 0 29 0 0 0.150 5 0.94
17 17 A 0 0 0 0 0 0 0 28 0 0 0 0 0 0 0 28 45 0 0 0 29 0 0 1.070 35 0.22
18 18 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 1 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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