Complet list of 1hs5 hssp file
Complete list of 1hs5.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1HS5
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER GENE REGULATION 22-DEC-00 1HS5
COMPND MOL_ID: 1; MOLECULE: CELLULAR TUMOR ANTIGEN P53; CHAIN: A, B; FRAGMENT
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR T.S.DAVISON,X.NIE,W.MA,Y.LI,C.KAY,S.BENCHIMOL,C.H.ARROWSMITH
DBREF 1HS5 A 1 34 UNP P04637 P53_HUMAN 324 357
DBREF 1HS5 B 1 34 UNP P04637 P53_HUMAN 324 357
SEQLENGTH 34
NCHAIN 2 chain(s) in 1HS5 data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 39
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B4DMH2_HUMAN 0.94 0.94 1 34 299 332 34 0 0 368 B4DMH2 Cellular tumor antigen p53 OS=Homo sapiens PE=2 SV=1
2 : B4DNI2_HUMAN 0.94 0.94 1 34 314 347 34 0 0 383 B4DNI2 Cellular tumor antigen p53 OS=Homo sapiens PE=2 SV=1
3 : B6E4X6_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 B6E4X6 Cellular tumor antigen p53 OS=Homo sapiens PE=2 SV=1
4 : E3U906_MACMU 0.94 0.94 1 34 324 357 34 0 0 393 E3U906 Cellular tumor antigen p53 OS=Macaca mulatta GN=TP53 PE=2 SV=1
5 : E5RMA8_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 E5RMA8 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=3 SV=1
6 : G1RF61_NOMLE 0.94 0.94 1 34 324 357 34 0 0 393 G1RF61 Cellular tumor antigen p53 OS=Nomascus leucogenys GN=TP53 PE=3 SV=1
7 : G3R2U9_GORGO 0.94 0.94 1 34 324 357 34 0 0 393 G3R2U9 Cellular tumor antigen p53 OS=Gorilla gorilla gorilla GN=101133524 PE=3 SV=1
8 : G7PTI9_MACFA 0.94 0.94 1 34 324 357 34 0 0 393 G7PTI9 Cellular tumor antigen p53 OS=Macaca fascicularis GN=EGM_07376 PE=3 SV=1
9 : H2EHT1_HUMAN 0.94 0.94 1 34 285 318 34 0 0 354 H2EHT1 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=2 SV=1
10 : H2NSL2_PONAB 0.94 0.94 1 34 324 357 34 0 0 393 H2NSL2 Cellular tumor antigen p53 OS=Pongo abelii GN=TP53 PE=3 SV=1
11 : H2QC53_PANTR 0.94 0.94 1 34 324 357 34 0 0 393 H2QC53 Cellular tumor antigen p53 OS=Pan troglodytes GN=TP53 PE=2 SV=1
12 : H6U5S2_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 H6U5S2 Cellular tumor antigen p53 (Fragment) OS=Homo sapiens PE=2 SV=1
13 : H6U5S3_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 H6U5S3 Cellular tumor antigen p53 (Fragment) OS=Homo sapiens PE=2 SV=1
14 : H9FFS1_MACMU 0.94 0.94 1 34 108 141 34 0 0 159 H9FFS1 Cellular tumor antigen p53 (Fragment) OS=Macaca mulatta GN=TP53 PE=2 SV=1
15 : K7PPA8_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 K7PPA8 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=2 SV=1
16 : K7PPU4_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 K7PPU4 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=2 SV=1
17 : M0R497_RAT 0.94 0.94 1 34 214 247 34 0 0 261 M0R497 Cellular tumor antigen p53 OS=Rattus norvegicus GN=LOC100910954 PE=3 SV=1
18 : P53_CHLAE 0.94 0.94 1 34 324 357 34 0 0 393 P13481 Cellular tumor antigen p53 OS=Chlorocebus aethiops GN=TP53 PE=2 SV=1
19 : P53_DELLE 0.94 0.94 1 34 318 351 34 0 0 387 Q8SPZ3 Cellular tumor antigen p53 OS=Delphinapterus leucas GN=TP53 PE=2 SV=1
20 : P53_HUMAN 3ZME 0.94 0.94 1 34 324 357 34 0 0 393 P04637 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=1 SV=4
21 : P53_MACFA 0.94 0.94 1 34 324 357 34 0 0 393 P56423 Cellular tumor antigen p53 OS=Macaca fascicularis GN=TP53 PE=2 SV=2
22 : P53_MACFU 0.94 0.94 1 34 324 357 34 0 0 393 P61260 Cellular tumor antigen p53 OS=Macaca fuscata fuscata GN=TP53 PE=2 SV=1
23 : P53_MACMU 0.94 0.94 1 34 324 357 34 0 0 393 P56424 Cellular tumor antigen p53 OS=Macaca mulatta GN=TP53 PE=2 SV=1
24 : Q1MSX0_HUMAN 0.94 0.94 1 34 313 346 34 0 0 382 Q1MSX0 Cellular tumor antigen p53 (Fragment) OS=Homo sapiens GN=TP53 PE=2 SV=1
25 : Q2XSC7_HUMAN 0.94 0.94 1 34 324 357 34 0 0 393 Q2XSC7 Cellular tumor antigen p53 OS=Homo sapiens GN=TP53 PE=2 SV=1
26 : Q53GA5_HUMAN 0.94 0.94 1 34 89 122 34 0 0 158 Q53GA5 Cellular tumor antigen p53 (Fragment) OS=Homo sapiens PE=2 SV=1
27 : Q5U0E4_HUMAN3OQ5 0.94 0.94 1 34 324 357 34 0 0 393 Q5U0E4 Cellular tumor antigen p53 OS=Homo sapiens PE=2 SV=1
28 : T0MFN1_9CETA 0.94 0.94 1 34 327 360 34 0 0 396 T0MFN1 Cellular tumor antigen p53 OS=Camelus ferus GN=CB1_000230034 PE=3 SV=1
29 : E9NME8_HORSE 0.91 0.94 1 34 312 345 34 0 0 381 E9NME8 Cellular tumor antigen p53 OS=Equus caballus PE=2 SV=1
30 : F6TL72_HORSE 0.91 0.94 1 34 200 233 34 0 0 269 F6TL72 Cellular tumor antigen p53 (Fragment) OS=Equus caballus GN=TP53 PE=3 SV=1
31 : F7GNX0_CALJA 0.91 0.94 1 34 326 359 34 0 0 395 F7GNX0 Cellular tumor antigen p53 OS=Callithrix jacchus GN=TP53 PE=2 SV=1
32 : F7GP14_CALJA 0.91 0.94 1 34 316 349 34 0 0 385 F7GP14 Cellular tumor antigen p53 OS=Callithrix jacchus GN=TP53 PE=3 SV=1
33 : K9KFA7_HORSE 0.91 0.94 1 34 22 55 34 0 0 91 K9KFA7 Cellular tumor antigen p53-like protein (Fragment) OS=Equus caballus PE=2 SV=1
34 : P53_FELCA 0.91 0.94 1 34 317 350 34 0 0 386 P41685 Cellular tumor antigen p53 OS=Felis catus GN=TP53 PE=2 SV=1
35 : U3D146_CALJA 0.91 0.94 1 34 326 359 34 0 0 395 U3D146 Cellular tumor antigen p53 OS=Callithrix jacchus GN=TP53 PE=2 SV=1
36 : E7FIY6_CANFA 0.85 0.94 1 34 312 345 34 0 0 381 E7FIY6 Cellular tumor antigen p53 OS=Canis familiaris GN=p53 PE=2 SV=1
37 : F1PI27_CANFA 0.85 0.94 1 34 314 347 34 0 0 383 F1PI27 Cellular tumor antigen p53 (Fragment) OS=Canis familiaris GN=TP53 PE=3 SV=1
38 : P53_CANFA 0.85 0.94 1 34 312 345 34 0 0 381 Q29537 Cellular tumor antigen p53 OS=Canis familiaris GN=TP53 PE=2 SV=2
39 : Q29475_CANFA 0.85 0.94 1 34 217 250 34 0 0 281 Q29475 Cellular tumor antigen p53 (Fragment) OS=Canis familiaris GN=p53 PE=2 SV=1
## ALIGNMENTS 1 - 39
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 228 40 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 2 A G - 0 0 56 40 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
3 3 A E + 0 0 156 40 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A Y - 0 0 127 40 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
5 5 A F E -A 44 0A 52 40 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
6 6 A T E -A 43 0A 64 40 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7 7 A L E -A 42 0A 11 40 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
8 8 A Q E -A 41 0A 110 40 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
9 9 A I E -A 40 0A 9 40 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
10 10 A R S S+ 0 0 199 40 14 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHHRRHRRRR
11 11 A G > - 0 0 7 40 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
12 12 A R H > S+ 0 0 159 40 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
13 13 A E H 4 S+ 0 0 100 40 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
14 14 A R H >> S+ 0 0 24 40 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
15 15 A F H 3X S+ 0 0 21 40 3 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYYYY
16 16 A E H 3X S+ 0 0 91 40 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
17 17 A Q H <> S+ 0 0 76 40 12 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
18 18 A F H X S+ 0 0 4 40 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
19 19 A R H X S+ 0 0 144 40 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
20 20 A E H X S+ 0 0 135 40 39 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEENNNN
21 21 A R H X>S+ 0 0 85 40 16 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
22 22 A N H X5S+ 0 0 29 40 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
23 23 A E H X5S+ 0 0 131 40 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
24 24 A A H >X5S+ 0 0 54 40 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
25 25 A L H 3X5S+ 0 0 8 40 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
26 26 A E H 3X