Complet list of 1hp3 hssp file
Complete list of 1hp3.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1HP3
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER TOXIN 12-DEC-00 1HP3
COMPND MOL_ID: 1; MOLECULE: OMEGA-ATRACOTOXIN-HV2A; CHAIN: A; FRAGMENT: N-TER
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE DOES NOT OCCUR
AUTHOR X.-H.WANG,G.F.KING
DBREF 1HP3 A 1 32 UNP P82852 TOT2A_HADVE 1 32
SEQLENGTH 32
NCHAIN 1 chain(s) in 1HP3 data set
NALIGN 2
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TOT2A_HADVE 1HP3 1.00 1.00 1 32 1 32 32 0 0 45 P82852 Omega-hexatoxin-Hv2a OS=Hadronyche versuta PE=1 SV=1
2 : TOT2B_ATRIL 0.52 0.71 1 31 57 86 31 1 1 100 Q9BJV7 Omega-hexatoxin-As2b OS=Atrax sp. (strain Illawarra) PE=2 SV=1
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A L 0 0 191 3 0 LL
2 2 A L + 0 0 162 3 0 LL
3 3 A A + 0 0 43 3 79 AD
4 4 A a + 0 0 56 3 0 CC
5 5 A L S S+ 0 0 132 3 46 LV
6 6 A F - 0 0 75 3 19 FL
7 7 A G + 0 0 58 3 59 GS
8 8 A N S S- 0 0 100 2 0 N.
9 9 A G S S+ 0 0 47 3 120 GR
10 10 A R + 0 0 176 3 120 RV
11 11 A b - 0 0 18 3 0 CC
12 12 A S S S+ 0 0 104 3 0 SS
13 13 A S S > S- 0 0 57 3 0 SS
14 14 A N G > S+ 0 0 87 3 53 ND
15 15 A R G 3 S+ 0 0 230 3 120 RA
16 16 A D G < S+ 0 0 53 3 53 DN
17 17 A c S < S- 0 0 7 3 0 CC
18 18 A a - 0 0 10 3 0 CC
19 19 A E S S+ 0 0 130 3 66 EG
20 20 A L S S+ 0 0 122 3 0 LL
21 21 A T + 0 0 20 3 0 TT
22 22 A P + 0 0 74 3 0 PP
23 23 A V E -A 30 0A 29 3 86 VT
24 24 A b E +A 29 0A 16 3 0 CC
25 25 A K E > +A 28 0A 154 3 0 KK
26 26 A R T 3 S- 0 0 227 3 86 RM
27 27 A G T 3 S+ 0 0 38 3 0 GG
28 28 A S E < -A 25 0A 42 3 126 SL
29 29 A c E +A 24 0A 14 3 0 CC
30 30 A V E -A 23 0A 55 3 0 VV
31 31 A S 0 0 83 3 73 SP
32 32 A S 0 0 148 2 0 S
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
2 2 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 0 33 3 0 0 0.637 21 0.20
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
5 5 A 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.53
6 6 A 0 33 0 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.80
7 7 A 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 3 1 0 0.637 21 0.40
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 67 0 0 0 0 0 0 33 0 0 0 0 0 3 0 0 0.637 21 -0.20
10 10 A 33 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 3 0 0 0.637 21 -0.20
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 33 3 0 0 0.637 21 0.47
15 15 A 0 0 0 0 0 0 0 0 33 0 0 0 0 0 67 0 0 0 0 0 3 0 0 0.637 21 -0.20
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 3 0 0 0.637 21 0.47
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 67 0 0 3 0 0 0.637 21 0.33
20 20 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
23 23 A 67 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.13
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
26 26 A 0 0 0 33 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 3 0 0 0.637 21 0.13
27 27 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
28 28 A 0 33 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 -0.27
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
30 30 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.27
32 32 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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