Complet list of 1hdl hssp file
Complete list of 1hdl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1HDL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER PUTATIVE SERINE PROTEINASE INHIBITOR 16-NOV-00 1HDL
COMPND MOL_ID: 1; MOLECULE: SERINE PROTEINASE INHIBITOR LEKTI; CHAIN: A; FRAG
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR T.LAUBER,P.ROESCH,U.C.MARX
DBREF 1HDL A 1 55 UNP Q9NQ38 ISK5_HUMAN 23 77
SEQLENGTH 55
NCHAIN 1 chain(s) in 1HDL data set
NALIGN 50
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : E5RFU9_HUMAN 1.00 1.00 1 55 23 77 55 0 0 201 E5RFU9 Hemofiltrate peptide HF6478 OS=Homo sapiens GN=SPINK5 PE=2 SV=1
2 : ISK5_HUMAN 1.00 1.00 1 55 23 77 55 0 0 1064 Q9NQ38 Serine protease inhibitor Kazal-type 5 OS=Homo sapiens GN=SPINK5 PE=1 SV=2
3 : G3S555_GORGO 0.98 0.98 1 55 23 77 55 0 0 1086 G3S555 Uncharacterized protein OS=Gorilla gorilla gorilla PE=4 SV=1
4 : G3SGQ2_GORGO 0.98 0.98 1 55 23 77 55 0 0 1023 G3SGQ2 Uncharacterized protein OS=Gorilla gorilla gorilla PE=4 SV=1
5 : F6VTF2_MACMU 0.96 0.98 2 55 24 77 54 0 0 1093 F6VTF2 Uncharacterized protein OS=Macaca mulatta GN=SPINK5 PE=4 SV=1
6 : F7F102_MACMU 0.96 0.98 2 55 24 77 54 0 0 1063 F7F102 Uncharacterized protein OS=Macaca mulatta GN=SPINK5 PE=4 SV=1
7 : F7F106_MACMU 0.96 0.98 6 55 27 76 50 0 0 1062 F7F106 Uncharacterized protein OS=Macaca mulatta GN=SPINK5 PE=4 SV=1
8 : G1RGB7_NOMLE 0.96 1.00 2 55 24 77 54 0 0 1093 G1RGB7 Uncharacterized protein OS=Nomascus leucogenys GN=SPINK5 PE=4 SV=1
9 : G7MVF1_MACMU 0.96 0.98 2 55 24 77 54 0 0 1091 G7MVF1 Putative uncharacterized protein (Fragment) OS=Macaca mulatta GN=EGK_16996 PE=4 SV=1
10 : G7P8L9_MACFA 0.96 0.98 2 55 24 77 54 0 0 1091 G7P8L9 Putative uncharacterized protein (Fragment) OS=Macaca fascicularis GN=EGM_15519 PE=4 SV=1
11 : H2PGZ7_PONAB 0.96 1.00 2 55 24 77 54 0 0 1088 H2PGZ7 Uncharacterized protein OS=Pongo abelii GN=SPINK5 PE=4 SV=1
12 : D2I0Y5_AILME 0.79 0.94 8 55 1 48 48 0 0 1039 D2I0Y5 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_018899 PE=4 SV=1
13 : F7HF00_CALJA 0.78 0.93 2 55 24 77 54 0 0 1088 F7HF00 Uncharacterized protein OS=Callithrix jacchus GN=SPINK5 PE=4 SV=1
14 : L9KZ66_TUPCH 0.78 0.91 2 55 24 77 54 0 0 1085 L9KZ66 Serine protease inhibitor Kazal-type 5 OS=Tupaia chinensis GN=TREES_T100002872 PE=4 SV=1
15 : A6QQG1_BOVIN 0.77 0.88 4 55 26 77 52 0 0 1091 A6QQG1 SPINK5 protein OS=Bos taurus GN=SPINK5 PE=2 SV=1
16 : B9VJ40_HORSE 0.76 0.94 2 55 13 66 54 0 0 983 B9VJ40 Serine peptidase inhibitor kazal type 5 (Fragment) OS=Equus caballus GN=SPINK5 PE=2 SV=1
17 : F1PR80_CANFA 0.76 0.94 2 55 24 77 54 0 0 1069 F1PR80 Uncharacterized protein OS=Canis familiaris GN=SPINK5 PE=4 SV=2
18 : F1PUI9_CANFA 0.76 0.94 2 55 24 77 54 0 0 1063 F1PUI9 Uncharacterized protein OS=Canis familiaris GN=SPINK5 PE=4 SV=2
19 : G1PGK9_MYOLU 0.76 0.93 2 55 24 77 54 0 0 1057 G1PGK9 Uncharacterized protein OS=Myotis lucifugus GN=SPINK5 PE=4 SV=1
20 : L8I528_9CETA 0.76 0.88 5 55 1 51 51 0 0 982 L8I528 Serine protease inhibitor Kazal-type 5 (Fragment) OS=Bos mutus GN=M91_21022 PE=4 SV=1
21 : Q4VYB4_CANFA 0.76 0.94 2 55 24 77 54 0 0 1063 Q4VYB4 Serine protease inhibitor Kazal-type 5 (Precursor) OS=Canis familiaris GN=spink5 PE=2 SV=1
22 : S7NCM2_MYOBR 0.76 0.93 2 55 2 55 54 0 0 1105 S7NCM2 Serine protease inhibitor Kazal-type 5 OS=Myotis brandtii GN=D623_10006549 PE=4 SV=1
23 : F1MJH0_BOVIN 0.75 0.87 4 55 26 77 52 0 0 1091 F1MJH0 Uncharacterized protein OS=Bos taurus GN=SPINK5 PE=4 SV=2
24 : M3WLW6_FELCA 0.75 0.94 3 55 25 77 53 0 0 1068 M3WLW6 Uncharacterized protein OS=Felis catus GN=SPINK5 PE=4 SV=1
25 : S9WYS4_9CETA 0.72 0.89 2 55 17 70 54 0 0 975 S9WYS4 Serine protease inhibitor Kazal-type 5 OS=Camelus ferus GN=CB1_000810001 PE=4 SV=1
26 : W5P1K5_SHEEP 0.71 0.85 4 55 91 142 52 0 0 1189 W5P1K5 Uncharacterized protein OS=Ovis aries GN=SPINK5 PE=4 SV=1
27 : W5P1K9_SHEEP 0.71 0.85 4 55 26 77 52 0 0 1090 W5P1K9 Uncharacterized protein OS=Ovis aries GN=SPINK5 PE=4 SV=1
28 : H0VQM2_CAVPO 0.70 0.83 2 55 24 77 54 0 0 1032 H0VQM2 Uncharacterized protein OS=Cavia porcellus GN=SPINK5 PE=4 SV=1
29 : I3M087_SPETR 0.67 0.85 2 55 24 77 54 0 0 1060 I3M087 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=SPINK5 PE=4 SV=1
30 : M3Y8K6_MUSPF 0.67 0.89 2 55 24 77 54 0 0 1063 M3Y8K6 Uncharacterized protein OS=Mustela putorius furo GN=SPINK5 PE=4 SV=1
31 : G3SR74_LOXAF 0.65 0.87 2 55 24 77 54 0 0 713 G3SR74 Uncharacterized protein OS=Loxodonta africana GN=SPINK5 PE=4 SV=1
32 : G3TV16_LOXAF 0.65 0.87 2 55 24 77 54 0 0 604 G3TV16 Uncharacterized protein OS=Loxodonta africana GN=SPINK5 PE=4 SV=1
33 : G1SVW2_RABIT 0.63 0.80 2 55 24 77 54 0 0 1094 G1SVW2 Uncharacterized protein OS=Oryctolagus cuniculus GN=SPINK5 PE=4 SV=2
34 : H0X8R7_OTOGA 0.63 0.81 2 55 24 77 54 0 0 1056 H0X8R7 Uncharacterized protein OS=Otolemur garnettii GN=SPINK5 PE=4 SV=1
35 : D3ZET2_RAT 0.43 0.74 2 55 24 77 54 0 0 1019 D3ZET2 Protein LOC100910851 OS=Rattus norvegicus GN=LOC100910851 PE=4 SV=2
36 : M0R9C2_RAT 0.43 0.74 2 55 24 77 54 0 0 1048 M0R9C2 Uncharacterized protein OS=Rattus norvegicus GN=LOC100910851 PE=4 SV=1
37 : M0RBA7_RAT 0.43 0.74 2 55 24 77 54 0 0 1060 M0RBA7 Uncharacterized protein OS=Rattus norvegicus GN=LOC100910851 PE=4 SV=1
38 : M0RC68_RAT 0.43 0.74 2 55 24 77 54 0 0 680 M0RC68 Uncharacterized protein OS=Rattus norvegicus GN=LOC100911797 PE=4 SV=1
39 : F1RLZ2_PIG 0.42 0.73 1 55 472 526 55 0 0 731 F1RLZ2 Uncharacterized protein (Fragment) OS=Sus scrofa GN=SPINK5 PE=4 SV=2
40 : F6W1Z1_HORSE 0.42 0.73 1 55 643 697 55 0 0 865 F6W1Z1 Uncharacterized protein OS=Equus caballus GN=SPINK5 PE=4 SV=1
41 : G1LSF5_AILME 0.42 0.75 1 55 618 672 55 0 0 840 G1LSF5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=SPINK5 PE=4 SV=1
42 : G3HYK4_CRIGR 0.39 0.71 4 52 705 753 49 0 0 832 G3HYK4 Serine protease inhibitor Kazal-type 5 OS=Cricetulus griseus GN=I79_016141 PE=4 SV=1
43 : G3VS45_SARHA 0.39 0.69 7 55 139 187 49 0 0 858 G3VS45 Uncharacterized protein OS=Sarcophilus harrisii GN=SPINK5 PE=4 SV=1
44 : F6TGT0_MONDO 0.38 0.76 1 55 732 786 55 0 0 930 F6TGT0 Uncharacterized protein OS=Monodelphis domestica GN=SPINK5 PE=4 SV=2
45 : M0RC67_RAT 0.38 0.70 2 54 743 795 53 0 0 795 M0RC67 Uncharacterized protein (Fragment) OS=Rattus norvegicus GN=LOC100910851 PE=4 SV=1
46 : F7CS26_ORNAN 0.37 0.71 5 55 1 51 51 0 0 249 F7CS26 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus PE=4 SV=1
47 : B4DWS3_HUMAN 0.36 0.69 1 55 606 660 55 0 0 876 B4DWS3 cDNA FLJ60407, highly similar to Serine protease inhibitor Kazal-type 5 (Fragment) OS=Homo sapiens PE=2 SV=1
48 : E7EWP9_HUMAN 0.36 0.69 1 55 606 660 55 0 0 869 E7EWP9 Hemofiltrate peptide HF6478 (Fragment) OS=Homo sapiens GN=SPINK5 PE=2 SV=1
49 : F7HF27_CALJA 0.36 0.71 1 55 533 587 55 0 0 1002 F7HF27 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=SPINK5 PE=4 SV=1
50 : F7HF29_CALJA 0.36 0.71 1 55 488 542 55 0 0 881 F7HF29 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=SPINK5 PE=4 SV=1
## ALIGNMENTS 1 - 50
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A K 0 0 235 13 59 KKKK NSS K RRRR
2 2 A N >> - 0 0 115 40 49 NNNNNN NNNN SD DDDN DN D DDDDDDDKKKKDNN NN EEEE
3 3 A E T 34 S+ 0 0 122 41 52 EEEEEE EEEE EE EEEE EE EE AAEEEEKGGGGAEE KS AAAA
4 4 A D T 34 S+ 0 0 139 46 43 DDDDDD DDDD DNNNNNN NNNNNNNNNNNNNDNNNNKKNS DN EEGG
5 5 A Q T <4 S+ 0 0 157 48 22 QQQQQQ QQQQ QQQQQQQKQQQQQQQQQQQQQQQQQQQQQE QEQKKKK
6 6 A E < + 0 0 107 49 17 EEEEEEEEEEE EEEEEEDEEDEEDEEEEEEEEDDDDDDDDD DDDEEEE
7 7 A M S S+ 0 0 73 50 78 MMMMIIIIIII ILTTTTATTATTITTTTTTTTTPPPPQQQEIEQMTTTT
8 8 A a + 0 0 16 51 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
9 9 A H S S+ 0 0 71 51 79 HHHHHHHHHHHDSSSNNNSSNSSNNSSSSDSSSSMMMMHHHSSHHTDDNN
10 10 A E S > S+ 0 0 132 51 26 EEEEEEEEEEEEGGEEEEEEEEEEEEEEGEEEKEKKKKEEEEEEEEEEEE
11 11 A F G > S+ 0 0 1 51 4 FFFFFFFFFFFYLFYYYYFYYFYYYYYFFYFFFFFFFFFFFFFYFFFFFF
12 12 A Q G > S+ 0 0 91 51 32 QQQQQQQQQQQRQRRRRRRRRRRRRRRQQRRRRRRRRRRRRRRRRRRRRR
13 13 A A G < S+ 0 0 77 51 64 AAAAAAAAAAAAAAVAAAVVAVVAAAAADTAAIAAAAANNNKDSSSRRSS
14 14 A F G < S+ 0 0 44 51 12 FFFFFFFFFFFLFLLLLLLLLLLLLLLLLLLLLLLLLLMMMLLLMLLLLL
15 15 A M B < -A 20 0A 94 51 18 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLLMMMMMMVVVLMMQLLLLL
16 16 A K S S- 0 0 121 51 38 KKEEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRRNLRQQQQ
17 17 A N S S- 0 0 146 51 20 NNNNNNNNNNNNKNNNNNNNNNNNNNNNNNTTNNNNNNDEEDNNNNNNNN
18 18 A G S S+ 0 0 70 51 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGEGGGGGG
19 19 A K - 0 0 112 51 31 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNTTTTKKKKIKRRKKKK
20 20 A L B -A 15 0A 25 51 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLYLLLLLL
21 21 A F + 0 0 58 51 39 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFSSSSIIILFIIYFFFF
22 22 A b + 0 0 3 51 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A P + 0 0 101 51 60 PPPPPPPPPPPSPPSSSSSSSSSSFSSPSSPPPPPPPPTTTPTTTTTTTT
24 24 A Q S S- 0 0 110 51 40 QQQQQQQQQQQQQQQRQQQQQQQQQQQQKQQQQHQQQQRRRQRRRRRRRR
25 25 A D > + 0 0 58 51 32 DDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDDGGGGEEEKEEEEEEEE
26 26 A K G > + 0 0 97 51 51 KKKKKKKKKKKKKNKKKKKKKKKKKKKTKKKKEENNNNNNNDNNNNNNNN
27 27 A K G > + 0 0 162 51 60 KKKKKKKKKKKKKKKKKKKKKKKKKLLKKENNKENNNNNNNDDDDDDDDD
28 28 A F G X + 0 0 91 51 90 FFFFFFFFFFFLFLPFLLLSLLPLLPPLLLLLLYSSSSPPPPPPPPPPPP
29 29 A F G < + 0 0 126 51 63 FFFFFFFFFFFFFFFFFFLFFLFFFVVFFFFFFFSSSSVVVVIIIVVVVV
30 30 A Q G < S+ 0 0 181 51 54 QQQQLLLQLLQQLQQEQQQQQQQQQQQQQQQQQQQQQQRRRRQRRKRRRR
31 31 A S S <> S- 0 0 71 51 34 SSSSSSSSSSGSSSSSSSSSSSSSSSSSSSSSTSSSSSGGGGGGGGGGGG
32 32 A L H > S+ 0 0 124 51 63 LLLLLLLLLLLPLPPPPPPPPPPPPPPPPPPPPPLLLLPPPALPPPPPPP
33 33 A D H > S+ 0 0 130 51 18 DDDDDDDDDDDSEDDDDDDDDDDDDDDDQDDDDENNNNDDDDDDDDDDDD
34 34 A G H > S+ 0 0 4 51 22 GGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGGWEDDDDGGGGGGGGGGGG
35 35 A I H X S+ 0 0 46 51 67 IIIIIIIIIIIIIIIIIIIIIIKIKIIIKRLLIVIIIIKKKTKKKKKKKK
36 36 A M H >X S+ 0 0 113 51 69 MMMMMMMMMMMAKMMMAAMMAMMAMMMTLANNTMIIIIMMMIHMTTTTTT
37 37 A F H 3X S+ 0 0 23 51 52 FFFFFFFFFFFFLFFFFFFFFFFFFFFFLFLLFLFFFFHHHYYHHHHHHH
38 38 A I H 3X S+ 0 0 17 51 68 IIIIIIIIIIIIIIVIIILVILVIIVVIFIIIIIQQQQIVVQGVVGGGGG
39 39 A N H X S+ 0 0 67 51 65 TTTTTTTTTTTTTTMSTTTMTTMTMMMSTMMMKTLLLLMMMMMMMMMMMM
44 44 A a H 3X S+ 0 0 1 51 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
45 45 A K H >X S+ 0 0 98 51 17 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQQKKRQKKKKK
46 46 A M H X S+ 0 0 94 51 15 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQEEQQQQQ
50 50 A K H >X S+ 0 0 94 51 39 KKKKKKKKKKKKNKKKKKKKKKKKKKKNKKKKKEQQQQRRRKARHKKKKK
51 51 A E H