Complet list of 1h20 hssp file
Complete list of 1h20.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1H20
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER INHIBITOR 29-JUL-02 1H20
COMPND MOL_ID: 1; MOLECULE: METALLOCARBOXYPEPTIDASE INHIBITOR; CHAIN: A; SYNO
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; ORGANISM_COMMON: PO
AUTHOR C.GONZALEZ,J.L.NEIRA,S.VENTURA,S.BRONSOMS,F.X.AVILES,M.RICO
DBREF 1H20 A 1 39 UNP P01075 MCPI_SOLTU 1 39
SEQLENGTH 39
NCHAIN 1 chain(s) in 1H20 data set
NALIGN 9
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : MCPI_SOLTU 1H20 0.97 1.00 1 39 1 39 39 0 0 39 P01075 Metallocarboxypeptidase inhibitor OS=Solanum tuberosum PE=1 SV=1
2 : Q9SBH8_SOLTU 0.97 1.00 1 39 57 95 39 0 0 102 Q9SBH8 Metallocarboxypeptidase inhibitor IIa OS=Solanum tuberosum PE=4 SV=1
3 : M1D116_SOLTU 0.76 0.88 3 36 10 43 34 0 0 50 M1D116 Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030731 PE=4 SV=1
4 : M1D117_SOLTU 0.76 0.88 3 36 40 73 34 0 0 80 M1D117 Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030731 PE=4 SV=1
5 : MCPI_SOLLC 0.71 0.84 2 39 33 70 38 0 0 77 P01076 Metallocarboxypeptidase inhibitor OS=Solanum lycopersicum PE=1 SV=2
6 : K4CBJ5_SOLLC 0.67 0.85 1 39 44 82 39 0 0 82 K4CBJ5 Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g007240.2 PE=4 SV=1
7 : K4CBJ6_SOLLC 0.65 0.85 3 36 42 75 34 0 0 82 K4CBJ6 Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g007260.2 PE=4 SV=1
8 : E3W9P5_TOBAC 0.51 0.79 1 39 49 87 39 0 0 93 E3W9P5 Putative metallocarboxypeptidase inhibitor OS=Nicotiana tabacum GN=NtMCPIb PE=4 SV=1
9 : E3W9P4_TOBAC 0.49 0.74 1 39 49 87 39 0 0 93 E3W9P4 Putative metallocarboxypeptidase inhibitor OS=Nicotiana tabacum GN=NtMCPIa PE=4 SV=1
## ALIGNMENTS 1 - 9
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 155 6 15 QQ Q QQ
2 2 A Q + 0 0 143 7 39 QQ QE EE
3 3 A H + 0 0 94 10 35 HHQQQDQQQ
4 4 A A + 0 0 84 10 102 AAEEYQVYY
5 5 A D - 0 0 20 10 0 DDDDDDDDD
6 6 A P S S+ 0 0 109 10 34 PPPPPPPAA
7 7 A I > + 0 0 37 10 52 IIIIVVVTT
8 8 A a B 3 S+a 34 0A 57 10 0 CCCCCCCCC
9 9 A N T 3 S+ 0 0 115 10 75 NNNNHGYGG
10 10 A K < - 0 0 86 10 0 KKKKKKKKK
11 11 A P B +C 33 0B 86 10 0 PPPPPPPPP
12 12 A b - 0 0 21 10 0 CCCCCCCCC
13 13 A K S S+ 0 0 96 10 63 KKKKSTKNN
14 14 A T S >> S- 0 0 84 10 0 TTTTTTTTT
15 15 A H T 34 S+ 0 0 53 10 42 HHHHQHHRR
16 16 A D T >4 S+ 0 0 99 10 0 DDDDDDDDD
17 17 A D T <4 S+ 0 0 63 10 0 DDDDDDDDD
18 18 A c T >< S+ 0 0 0 10 0 CCCCCCCCC
19 19 A S T < + 0 0 87 10 0 SSSSSSSSS
20 20 A G T 3 S+ 0 0 70 10 54 GGGGGEGSK
21 21 A A < - 0 0 10 10 31 AAAAGAAGG
22 22 A W S S+ 0 0 133 10 57 WWLLTWLWW
23 23 A F S S+ 0 0 70 10 19 FFFFFLYLL
24 24 A a S S+ 0 0 2 10 0 CCCCCCCCC
25 25 A Q + 0 0 26 10 67 QQEEQQESS
26 26 A A E S-B 35 0A 14 10 40 AAAAAAAEE
27 27 A b E -B 34 0A 11 10 0 CCCCCCCCC
28 28 A W > - 0 0 108 10 39 WWRRWWRYY
29 29 A N T 4 S+ 0 0 137 10 56 NNRRRNRNN
30 30 A S T 4 S+ 0 0 105 10 97 SSAAFFAFF
31 31 A A T 4 S- 0 0 37 10 68 AAAAARASR
32 32 A R < + 0 0 145 10 82 RRGGGQGKK
33 33 A T B S-C 11 0B 15 10 17 TTTTTTSTT
34 34 A c E +aB 8 27A 0 10 0 CCCCCCCCC
35 35 A G E - B 0 26A 7 10 0 GGGGGGGGG
36 36 A P - 0 0 47 10 0 PPPPPPPPP
37 37 A Y - 0 0 123 7 47 YY YF LL
38 38 A V 0 0 120 7 9 VV VV VI
39 39 A G 0 0 134 7 0 GG GG GG
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 6 0 0 0.451 15 0.84
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 43 0 0 7 0 0 0.683 22 0.60
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 30 0 0 60 0 0 10 10 0 0 0.898 29 0.64
4 4 A 10 0 0 0 0 0 30 0 30 0 0 0 0 0 0 0 10 20 0 0 10 0 0 1.505 50 -0.02
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 10 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 20 80 0 0 0 0 0 0 0 0 0 0 10 0 0 0.500 16 0.66
7 7 A 30 0 50 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 10 0 0 1.030 34 0.47
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 10 30 0 0 0 0 0 10 0 0 0 0 50 0 10 0 0 1.168 38 0.25
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 10 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 10 10 0 0 0 60 0 0 20 0 10 0 0 1.089 36 0.36
14 14 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 70 20 0 10 0 0 0 10 0 0 0.802 26 0.58
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 10 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 10 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 70 0 0 10 0 0 0 0 10 0 10 0 0 10 0 0 0.940 31 0.45
21 21 A 0 0 0 0 0 0 0 30 70 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0.611 20 0.68
22 22 A 0 30 0 0 0 60 0 0 0 0 0 10 0 0 0 0 0 0 0 0 10 0 0 0.898 29 0.43
23 23 A 0 30 0 0 60 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0.898 29 0.81
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 50 30 0 0 10 0 0 1.030 34 0.33
26 26 A 0 0 0 0 0 0 0 0 80 0 0 0 0 0 0 0 0 20 0 0 10 0 0 0.500 16 0.59
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 50 20 0 0 0 0 0 0 0 30 0 0 0 0 0 10 0 0 1.030 34 0.61
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0 60 0 10 0 0 0.673 22 0.44
30 30 A 0 0 0 0 40 0 0 0 30 0 30 0 0 0 0 0 0 0 0 0 10 0 0 1.089 36 0.02
31 31 A 0 0 0 0 0 0 0 0 70 0 10 0 0 0 20 0 0 0 0 0 10 0 0 0.802 26 0.32
32 32 A 0 0 0 0 0 0 0 40 0 0 0 0 0 0 30 20 10 0 0 0 10 0 0 1.280 42 0.18
33 33 A 0 0 0 0 0 0 0 0 0 0 10 90 0 0 0 0 0 0 0 0 10 0 0 0.325 10 0.83
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 10 0 0 0.000 0 1.00
37 37 A 0 29 0 0 14 0 57 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.956 31 0.52
38 38 A 86 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.410 13 0.91
39 39 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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