Complet list of 1gw3 hssp file
Complete list of 1gw3.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1GW3
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER HIGH DENSITY LIPOPROTEINS 04-JUN-97 1GW3
COMPND MOL_ID: 1; MOLECULE: APOA-I; CHAIN: A; FRAGMENT: RESIDUES 142 - 187; S
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR G.WANG,J.T.SPARROW,R.J.CUSHLEY
DBREF 1GW3 A 1 46 UNP P02647 APOA1_HUMAN 166 211
SEQLENGTH 46
NCHAIN 1 chain(s) in 1GW3 data set
NALIGN 77
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : APOA1_GORGO 1.00 1.00 1 46 166 211 46 0 0 267 G3QY98 Apolipoprotein A-I OS=Gorilla gorilla gorilla GN=APOA1 PE=1 SV=1
2 : APOA1_HUMAN 1.00 1.00 1 46 166 211 46 0 0 267 P02647 Apolipoprotein A-I OS=Homo sapiens GN=APOA1 PE=1 SV=1
3 : APOA1_PANPA 1.00 1.00 1 46 166 211 46 0 0 267 P0DM91 Apolipoprotein A-I OS=Pan paniscus GN=APOA1 PE=1 SV=1
4 : APOA1_PANTR 1.00 1.00 1 46 166 211 46 0 0 267 P0DJG0 Apolipoprotein A-I OS=Pan troglodytes GN=APOA1 PE=1 SV=1
5 : F8W696_HUMAN 1.00 1.00 1 46 144 189 46 0 0 245 F8W696 Truncated apolipoprotein A-I OS=Homo sapiens GN=APOA1 PE=2 SV=1
6 : G1R6X5_NOMLE 1.00 1.00 1 46 166 211 46 0 0 267 G1R6X5 Uncharacterized protein OS=Nomascus leucogenys GN=APOA1 PE=3 SV=1
7 : K7D1U8_PANTR 1.00 1.00 1 46 166 211 46 0 0 267 K7D1U8 Apolipoprotein A-I OS=Pan troglodytes GN=APOA1 PE=2 SV=1
8 : APOA1_MACFA 0.98 1.00 1 46 166 211 46 0 0 267 P68292 Apolipoprotein A-I OS=Macaca fascicularis GN=APOA1 PE=1 SV=1
9 : APOA1_PAPHA 0.98 1.00 1 46 166 211 46 0 0 267 P68293 Apolipoprotein A-I OS=Papio hamadryas GN=APOA1 PE=2 SV=1
10 : APOA1_PONAB 0.98 1.00 1 46 166 211 46 0 0 267 P0DJG1 Apolipoprotein A-I OS=Pongo abelii GN=APOA1 PE=1 SV=1
11 : F7FQM7_MACMU 0.98 1.00 1 46 166 211 46 0 0 267 F7FQM7 Uncharacterized protein OS=Macaca mulatta GN=APOA4 PE=3 SV=1
12 : G7PP13_MACFA 0.98 1.00 1 46 166 211 46 0 0 267 G7PP13 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_06260 PE=3 SV=1
13 : Q8HZ96_9PRIM 0.98 0.98 1 46 129 174 46 0 0 191 Q8HZ96 Apolipoprotein A-I (Fragment) OS=Gorilla gorilla PE=3 SV=1
14 : Q8HZ97_PANTR 0.98 0.98 1 46 129 174 46 0 0 191 Q8HZ97 Apolipoprotein A-I (Fragment) OS=Pan troglodytes PE=3 SV=1
15 : Q9Y355_HUMAN 0.98 0.98 1 46 2 47 46 0 0 67 Q9Y355 Apolipoprotein A1 (Fragment) OS=Homo sapiens PE=4 SV=1
16 : Q8HZ95_PONPY 0.96 0.98 1 46 129 174 46 0 0 191 Q8HZ95 Apolipoprotein A-I (Fragment) OS=Pongo pygmaeus PE=3 SV=1
17 : D7PGV9_MARMO 0.89 1.00 1 45 165 209 45 0 0 264 D7PGV9 Apolipoprotein A-I preproprotein OS=Marmota monax GN=ApoA1 PE=2 SV=1
18 : I3M072_SPETR 0.89 0.98 1 45 165 209 45 0 0 264 I3M072 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=APOA1 PE=3 SV=1
19 : Q8HZ94_SAGOE 0.89 1.00 1 46 129 174 46 0 0 191 Q8HZ94 Apolipoprotein A-I (Fragment) OS=Saguinus oedipus PE=3 SV=1
20 : APOA1_TARSY 0.85 1.00 1 46 165 210 46 0 0 266 P0DMC1 Apolipoprotein A-I OS=Tarsius syrichta GN=APOA1 PE=2 SV=1
21 : B1MTR0_CALMO 0.85 1.00 1 46 166 211 46 0 0 267 B1MTR0 Apolipoprotein A-I (Predicted) OS=Callicebus moloch GN=APOA1 PE=3 SV=1
22 : M3WPG6_FELCA 0.85 1.00 1 46 165 210 46 0 0 269 M3WPG6 Uncharacterized protein OS=Felis catus GN=APOA1 PE=3 SV=1
23 : APOA1_AILME 0.83 0.98 1 46 165 210 46 0 0 266 D2HC77 Apolipoprotein A-I OS=Ailuropoda melanoleuca GN=APOA1 PE=2 SV=1
24 : APOA1_CANFA 0.83 0.98 1 46 165 210 46 0 0 266 P02648 Apolipoprotein A-I OS=Canis familiaris GN=APOA1 PE=1 SV=2
25 : F1PDJ5_CANFA 0.83 0.98 1 46 165 210 46 0 0 266 F1PDJ5 Apolipoprotein A-I OS=Canis familiaris GN=APOA1 PE=3 SV=1
26 : B5SNQ3_OTOGA 0.82 0.96 2 46 166 210 45 0 0 266 B5SNQ3 Apolipoprotein A-I preproprotein (Predicted) OS=Otolemur garnettii GN=APOA1 PE=3 SV=1
27 : B0KWR1_CALJA 0.80 0.96 1 46 166 211 46 0 0 263 B0KWR1 Apolipoprotein A-I preproprotein (Predicted) OS=Callithrix jacchus GN=APOA1 PE=3 SV=1
28 : F7HUS6_CALJA 0.80 0.96 1 46 166 211 46 0 0 266 F7HUS6 Uncharacterized protein OS=Callithrix jacchus GN=APOA1 PE=3 SV=1
29 : M1EEM8_MUSPF 0.78 0.98 1 46 165 210 46 0 0 265 M1EEM8 Apolipoprotein A-I (Fragment) OS=Mustela putorius furo PE=2 SV=1
30 : M3XYN3_MUSPF 0.78 0.98 1 46 222 267 46 0 0 323 M3XYN3 Uncharacterized protein OS=Mustela putorius furo GN=APOA1 PE=3 SV=1
31 : G3TLG4_LOXAF 0.77 0.95 1 44 165 208 44 0 0 263 G3TLG4 Uncharacterized protein OS=Loxodonta africana GN=APOA4 PE=3 SV=1
32 : APOA1_BALAS 0.76 0.93 1 46 165 210 46 0 0 265 P0DMA6 Apolipoprotein A-I OS=Balaenoptera acutorostrata scammoni GN=APOA1 PE=2 SV=1
33 : APOA1_BOVIN 0.76 0.96 1 46 165 210 46 0 0 265 P15497 Apolipoprotein A-I OS=Bos taurus GN=APOA1 PE=1 SV=3
34 : APOA1_PIG 0.76 0.93 1 46 165 210 46 0 0 265 P18648 Apolipoprotein A-I OS=Sus scrofa GN=APOA1 PE=1 SV=4
35 : APOA1_RABIT 0.76 0.93 1 46 165 210 46 0 0 266 P09809 Apolipoprotein A-I OS=Oryctolagus cuniculus GN=APOA1 PE=1 SV=2
36 : B7NZM1_RABIT 0.76 0.93 1 46 165 210 46 0 0 266 B7NZM1 Apolipoprotein A-I (Predicted) OS=Oryctolagus cuniculus GN=RA_m003_jsm4E071r PE=3 SV=1
37 : G1SZV5_RABIT 0.76 0.93 1 46 165 210 46 0 0 266 G1SZV5 Apolipoprotein A-I OS=Oryctolagus cuniculus GN=APOA1 PE=3 SV=1
38 : Q2PPJ8_RABIT 0.76 0.93 1 46 165 210 46 0 0 266 Q2PPJ8 Apolipoprotein A-I OS=Oryctolagus cuniculus GN=apoA-I PE=2 SV=1
39 : V6F9A2_BOVIN 0.76 0.96 1 46 165 210 46 0 0 265 V6F9A2 Apolipoprotein A-I preproprotein OS=Bos taurus GN=APOA1 PE=3 SV=1
40 : W5NX51_SHEEP 0.76 0.96 1 46 159 204 46 0 0 259 W5NX51 Uncharacterized protein OS=Ovis aries GN=APOA1 PE=4 SV=1
41 : APOA1_ORYAF 0.73 0.93 1 44 167 210 44 0 0 265 P0DMC0 Apolipoprotein A-I OS=Orycteropus afer GN=APOA1 PE=2 SV=1
42 : L5KMA9_PTEAL 0.73 0.91 1 45 165 209 45 0 0 265 L5KMA9 Apolipoprotein A-I OS=Pteropus alecto GN=PAL_GLEAN10009072 PE=3 SV=1
43 : APOA1_PHYCD 0.72 0.93 1 46 165 210 46 0 0 265 P0DMA9 Apolipoprotein A-I OS=Physeter catodon GN=APOA1 PE=2 SV=1
44 : V6F869_BOVIN 0.72 0.91 1 46 122 167 46 0 0 208 V6F869 Apolipoprotein A-I-like OS=Bos taurus GN=LOC100297695 PE=3 SV=1
45 : B2KIF8_RHIFE 0.71 0.96 2 46 166 210 45 0 0 265 B2KIF8 Apolipoprotein A-I (Predicted) OS=Rhinolophus ferrumequinum GN=APOA1 PE=3 SV=1
46 : APOA1_PANHO 0.70 0.87 1 46 165 207 46 1 3 262 P0DMA8 Apolipoprotein A-I OS=Pantholops hodgsonii GN=APOA1 PE=2 SV=1
47 : APOA1_TURTR 0.70 0.91 1 46 165 210 46 0 0 265 P0DMB0 Apolipoprotein A-I OS=Tursiops truncatus GN=APOA1 PE=2 SV=1
48 : F6Z2L5_HORSE 0.70 0.93 1 46 165 210 46 0 0 266 F6Z2L5 Uncharacterized protein OS=Equus caballus GN=APOA1 PE=3 SV=1
49 : H0VVW3_CAVPO 0.64 0.89 1 45 158 202 45 0 0 257 H0VVW3 Uncharacterized protein OS=Cavia porcellus GN=APOA1 PE=3 SV=1
50 : APOA1_TUPBE 0.61 0.87 1 46 165 210 46 0 0 265 O18759 Apolipoprotein A-I OS=Tupaia belangeri GN=APOA1 PE=2 SV=1
51 : L9KQJ6_TUPCH 0.61 0.87 1 46 165 210 46 0 0 265 L9KQJ6 Apolipoprotein A-I OS=Tupaia chinensis GN=TREES_T100002981 PE=3 SV=1
52 : APOA1_HETGA 0.60 0.87 1 45 165 209 45 0 0 264 G5BQH5 Apolipoprotein A-I OS=Heterocephalus glaber GN=Apoa1 PE=2 SV=2
53 : APOA1_MESAU 0.60 0.82 1 45 165 209 45 0 0 264 Q9Z2L4 Apolipoprotein A-I OS=Mesocricetus auratus GN=APOAI PE=2 SV=1
54 : G3I7Q1_CRIGR 0.60 0.82 1 45 165 209 45 0 0 264 G3I7Q1 Apolipoprotein A-I OS=Cricetulus griseus GN=I79_019548 PE=3 SV=1
55 : A4GUJ5_MELGA 0.59 0.86 1 44 16 59 44 0 0 115 A4GUJ5 Apolipoprotein A-1 (Fragment) OS=Meleagris gallopavo GN=apo a-1 PE=2 SV=1
56 : APOA1_ANAPL 0.59 0.86 1 44 165 208 44 0 0 264 O42296 Apolipoprotein A-I OS=Anas platyrhynchos GN=APOA1 PE=2 SV=1
57 : APOA1_CHICK 0.59 0.86 1 44 165 208 44 0 0 264 P08250 Apolipoprotein A-I OS=Gallus gallus GN=APOA1 PE=1 SV=2
58 : D9HUC8_LAGLG 0.59 0.86 1 44 79 122 44 0 0 170 D9HUC8 Apolipoprotein A-I (Fragment) OS=Lagopus lagopus scotica GN=APOA1 PE=3 SV=1
59 : D9HUF2_LAGLG 0.59 0.86 1 44 79 122 44 0 0 161 D9HUF2 Apolipoprotein A-I (Fragment) OS=Lagopus lagopus scotica GN=APOA1 PE=3 SV=1
60 : D9HUG4_LAGLG 0.59 0.86 1 44 79 122 44 0 0 165 D9HUG4 Apolipoprotein A-I (Fragment) OS=Lagopus lagopus GN=APOA1 PE=3 SV=1
61 : D9HUL2_LAGLG 0.59 0.86 1 44 79 122 44 0 0 170 D9HUL2 Apolipoprotein A-I (Fragment) OS=Lagopus lagopus GN=APOA1 PE=3 SV=1
62 : D9HUM4_LAGLG 0.59 0.86 1 44 78 121 44 0 0 169 D9HUM4 Apolipoprotein A-I (Fragment) OS=Lagopus lagopus GN=APOA1 PE=3 SV=1
63 : G1MVX1_MELGA 0.59 0.86 1 44 165 208 44 0 0 264 G1MVX1 Uncharacterized protein OS=Meleagris gallopavo GN=APOA1 PE=3 SV=1
64 : Q7SZA1_XENLA 0.59 0.89 1 46 158 203 46 0 0 260 Q7SZA1 MGC64335 protein OS=Xenopus laevis GN=apoa1 PE=2 SV=1
65 : U3I449_ANAPL 0.59 0.86 1 44 157 200 44 0 0 256 U3I449 Apolipoprotein A-I (Fragment) OS=Anas platyrhynchos GN=APOA1 PE=3 SV=1
66 : U5YS24_9AVES 0.59 0.86 1 44 165 208 44 0 0 264 U5YS24 Apolipoprotein A-I OS=Anser anser GN=APOA1 PE=2 SV=1
67 : APOA1_MOUSE 0.58 0.78 1 45 165 209 45 0 0 264 Q00623 Apolipoprotein A-I OS=Mus musculus GN=Apoa1 PE=1 SV=2
68 : Q3V2G1_MOUSE 0.58 0.78 1 45 165 209 45 0 0 264 Q3V2G1 Putative uncharacterized protein OS=Mus musculus GN=Apoa1 PE=2 SV=1
69 : Q58EV2_MOUSE 0.58 0.78 1 45 99 143 45 0 0 198 Q58EV2 Apoa1 protein OS=Mus musculus GN=Apoa1 PE=2 SV=1
70 : G5D7C2_9PASE 0.57 0.86 1 44 167 210 44 0 0 266 G5D7C2 Apolipoprotein AI (Fragment) OS=Euplectes orix PE=2 SV=1
71 : Q9TS49_ERIEU 0.56 0.81 3 45 143 185 43 0 0 241 Q9TS49 Apolipoprotein A-I, APOA-I=CHOLESTEROL transporter OS=Erinaceus europaeus PE=1 SV=1
72 : B5G356_TAEGU 0.55 0.86 1 44 165 208 44 0 0 264 B5G356 Putative apolipoprotein A-I OS=Taeniopygia guttata PE=2 SV=1
73 : B5G357_TAEGU 0.55 0.86 1 44 165 208 44 0 0 264 B5G357 Putative apolipoprotein A-I OS=Taeniopygia guttata PE=2 SV=1
74 : U3JSR9_FICAL 0.55 0.86 1 44 167 210 44 0 0 266 U3JSR9 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=APOA1 PE=3 SV=1
75 : M7BHK3_CHEMY 0.52 0.86 1 44 1353 1396 44 0 0 1455 M7BHK3 Serine/threonine-protein kinase SIK3 OS=Chelonia mydas GN=UY3_07695 PE=3 SV=1
76 : Q7ZYS5_XENLA 0.52 0.87 1 46 158 203 46 0 0 260 Q7ZYS5 MGC52934 protein OS=Xenopus laevis PE=2 SV=1
77 : Q6DDC5_XENTR 0.50 0.85 1 46 158 203 46 0 0 261 Q6DDC5 Apolipoprotein A-I OS=Xenopus tropicalis GN=apoa1 PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 156 75 50 SSSSSSSSSSSSSSSSSSSSSSSSS SSTTSTSSSSSSSSGSTS STTTTTATTTTTTTTTTTTTTSSST
2 2 A P - 0 0 129 77 3 PPPPPPPPPPPPPPPPPPPPPPPPPPSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
3 3 A L - 0 0 122 78 26 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVVVVVVVVIVVVVVV
4 4 A G - 0 0 64 78 31 GGGGGGGGGGGGGGGGGGGGAGGAGGGGGGAAAAAAAAAAGGAAGAAAGGGGGGAAAAAAAAAAAAAAAA
5 5 A E S S+ 0 0 168 78 11 EEEEEEEEEEEEEEEEQQEEEEEEEEEEEEEEQEEEEEQQEEEQEQEEEEEQEEEEEEEEEEEEEEEEEE
6 6 A E S > S+ 0 0 168 78 12 EEEEEEEEEEEEEEEEEEEEQEEEEDQQEEEEEEEEEEEEEEEEEEEEDDDDDDEEEEEEEEEEEEEEEE
7 7 A M T 4 S+ 0 0 129 75 64 MMMMMMMVVMVVXXMXLMVLVLLLLLVVLLLMLLLLLLLLLFMLLLMMLLLILLAAAAAAAAAVAAFFFA
8 8 A R T >> S+ 0 0 152 78 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
9 9 A D T 34 S+ 0 0 85 78 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDQDDDDDDDDDDDDDDDDDD
10 10 A R T >X S+ 0 0 209 78 21 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSSSSRRSRRRRRRRRSSRRRRRRRRRRRRKRRRRRR
11 11 A A T <4 S+ 0 0 29 78 66 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAALTVVAMMLLLLLLLLLVLLMMML
12 12 A R T 3< S+ 0 0 146 78 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
13 13 A A T <> S+ 0 0 57 78 64 AAAAAAAAAAAAAAAAATATATITTAVVTTVAAATTTTAASTAASASTEAAEHKGGGGGGGGGVGGTTTG
14 14 A H H X S+ 0 0 116 78 16 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHYYYHHHHHHHHHHHDHHHHHH
15 15 A V H > S+ 0 0 43 77 8 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAV.VVVAAVVVVVVVVVVVVVVVVVVV
16 16 A D H > S+ 0 0 123 77 20 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEDDDDEEDDEEA.EEDDDDDDEEEEEEEEEDEEDDDE
17 17 A A H X S+ 0 0 53 77 65 AAAAAAAAAAAAAAAAAATSTAAAATTTAAATTATTTTTTAATTA.TSVTTAATEEEEEEEEEAEESSSE
18 18 A L H X S+ 0 0 94 78 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLL
19 19 A R H < S+ 0 0 183 78 2 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRERRRRRRRRRRRRRRRRRRRRRRRR
20 20 A T H >< S+ 0 0 118 78 69 TTTTTTTTTTTTTTTTTTTTTAAAATTTAASQQQTTTTQQTQQQLKQVTTTTTTKKKKKKKKKSKKTTTK
21 21 A H H 3< S+ 0 0 134 78 57 HHHHHHHHHHHHHHHHHHQQQQQQQQQQHHQQQHKKKKQQQQQQQQQNQQQHKKNNNNNNNNNRNNQQQN
22 22 A L T 3< S+ 0 0 95 78 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLMLLLLLLLLLLLLLLLLL
23 23 A A S < S+ 0 0 62 78 19 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAANAAAAAAAAAGTTAAAAAAAAATAAAAAA
24 24 A P S > S+ 0 0 90 78 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPP
25 25 A Y T 4 S+ 0 0 146 78 9 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFYYYYYYYYYYYYYYYYYHHHF
26 26 A S T > S+ 0 0 43 78 10 SSSSSSSSSTSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSTSSSSSSSSSSSSSSSSSS
27 27 A D H > S+ 0 0 137 78 18 DDDDDDDDDDDDDDDDDDDEDDDDDDDDDDEDDDNNNNDDEEDDDDDEEEEQDDDDDDDDDDDDDDEEED
28 28 A E H >X S+ 0 0 136 78 27 EEEEEEEEEEEEEEEEEEEEEEQDDDKKQQEEDDEEEEDDEEDDEDDEEQQGQQEEEEEEEEEEEEQQQE
29 29 A L H >> S+ 0 0 71 78 12 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLMMMMMMLLLLLLLLLILLMMML
30 30 A R H 3X S+ 0 0 155 78 7 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQQQQRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
31 31 A Q H < S+ 0 0 71 78 68 AAAAAAAAAAAAAAAAAATSTAAAATTTTTSAAAAAAAAASSTATAASKAAKEEQQQQQQQQQAQQQQQQ
36 36 A R G >X S+ 0 0 183 78 23 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKKKKKKKKKKKKRRRK
37 37 A L G 34 S+ 0 0 81 78 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLFLLLLLLLLFLLLFLLLLLLLLLLLLLLLLLLLLLLL
38 38 A E G <4 S+ 0 0 157 78 24 EEEEEEEEEEEEEEEEEEEEEQQEQEEEQQEEEEEEEEEEEQEEQEEQEEEEAAEEEEEEEEEEEEAAAE
39 39 A A T <4 S+ 0 0 56 78 60 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAMAASSSSAAAMVAAAMAEAAAQQEEEEEEEEEEEEEEEE
40 40 A L S < S+ 0 0 158 78 24 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLIIIILLLLLLLLLLLIILLLIIIIIIIIILIILLLI
41 41 A K S S- 0 0 129 78 20 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRRRRRKRRKKKR
42 42 A E - 0 0 114 78 26 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEDEADDEEEDDEEEEEEEEEAEESSSE
43 43 A N S S+ 0 0 150 78 68 NNNNNNNNNNNNNNNNSGSSSSDGGGSSGGGGGGGGGGGGSSGGSGGGSGGSSSKKKKKKKKKNKKNNNK
44 44 A G S S+ 0 0 63 78 29 GGGGGGGGGGGGGGGGSSGGGGGGGGGGGGSGGGGGGGGGNGGGSGGGAGGAPPGGGGGGGGGAGGPPPG
45 45 A G 0 0 67 60 37 GGGGGGGGGGGGGGGGSSGGGGGGGTGGSS GGGGGGGGG SGGAGGGTSSPTT G TTT
46 46 A A 0 0 182 49 42 AAAAAAAAAAAAAAAA AAAAAAAAAAAA SSSAAAASS SSTSSA AA P
## ALIGNMENTS 71 - 77
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A S 0 0 156 75 50 TTTTTT
2 2 A P - 0 0 129 77 3 PPPPPP
3 3 A L - 0 0 122 78 26 LVVVVII
4 4 A G - 0 0 64 78 31 GAAAAAA
5 5 A E S S+ 0 0 168 78 11 QEEEEEE
6 6 A E S > S+ 0 0 168 78 12 QEEEEEE
7 7 A M T 4 S+ 0 0 129 75 64 HAAAAII
8 8 A R T >> S+ 0 0 152 78 0 RRRRRRR
9 9 A D T 34 S+ 0 0 85 78 2 DDDDDDD
10 10 A R T >X S+ 0 0 209 78 21 RRRRRKK
11 11 A A T <4 S+ 0 0 29 78 66 VLLLLVV
12 12 A R T 3< S+ 0 0 146 78 0 RRRRRRR
13 13 A A T <> S+ 0 0 57 78 64 TGGGGVV
14 14 A H H X S+ 0 0 116 78 16 HHHHHED
15 15 A V H > S+ 0 0 43 77 8 VVVVVVV
16 16 A D H > S+ 0 0 123 77 20 DEEEEDD
17 17 A A H X S+ 0 0 53 77 65 AEEEESS
18 18 A L H X S+ 0 0 94 78 1 LLLLLLL
19 19 A R H < S+ 0 0 183 78 2 RRRRRRR
20 20 A T H >< S+ 0 0 118 78 69 TKKKKSS
21 21 A H H 3< S+ 0 0 134 78 57 DNNNNNR
22 22 A L T 3< S+ 0 0 95 78 5 LVVVLLL
23 23 A A S < S+ 0 0 62 78 19 AAAATTT
24 24 A P S > S+ 0 0 90 78 2 PPPPPPP
25 25 A Y T 4 S+ 0 0 146 78 9 YFFFYYY
26 26 A S T > S+ 0 0 43 78 10 GSSSSSS
27 27 A D H > S+ 0 0 137 78 18 EDDDDDE
28 28 A E H >X S+ 0 0 136 78 27 EEEEEDE
29 29 A L H >> S+ 0 0 71 78 12 ALLLLVV
30 30 A R H 3X S+ 0 0 155 78 7 RRRRRRR
31 31 A Q H < S+ 0 0 71 78 68 QQQQQQE
36 36 A R G >X S+ 0 0 183 78 23 RKKKKKK
37 37 A L G 34 S+ 0 0 81 78 2 LLLLLLL
38 38 A E G <4 S+ 0 0 157 78 24 QEEEQEE
39 39 A A T <4 S+ 0 0 56 78 60 DEEEEEE
40 40 A L S < S+ 0 0 158 78 24 IIIIILL
41 41 A K S S- 0 0 129 78 20 KRRRRKK
42 42 A E - 0 0 114 78 26 AEEEEAA
43 43 A N S S+ 0 0 150 78 68 KKKKKNN
44 44 A G S S+ 0 0 63 78 29 SGGGGAA
45 45 A G 0 0 67 60 37 G GG
46 46 A A 0 0 182 49 42 PP
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 1 1 0 57 40 0 0 0 0 0 0 0 0 75 0 0 0.801 26 0.50
2 2 A 0 0 0 0 0 0 0 0 0 97 3 0 0 0 0 0 0 0 0 0 77 0 0 0.120 4 0.96
3 3 A 24 72 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.707 23 0.73
4 4 A 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.693 23 0.69
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 88 0 0 78 0 0 0.358 11 0.88
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 86 0 9 78 0 0 0.499 16 0.88
7 7 A 12 36 4 20 5 0 0 0 21 0 0 0 0 1 0 0 0 0 0 0 75 0 0 1.616 53 0.35
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 78 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 99 78 0 0 0.069 2 0.98
10 10 A 0 0 0 0 0 0 0 0 0 0 9 0 0 0 87 4 0 0 0 0 78 0 0 0.461 15 0.78
11 11 A 8 24 0 6 0 0 0 0 60 0 0 1 0 0 0 0 0 0 0 0 78 0 0 1.079 36 0.33
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 78 0 0 0.000 0 1.00
13 13 A 8 0 1 0 0 0 0 21 40 0 4 22 0 1 0 1 0 3 0 0 78 0 0 1.608 53 0.35
14 14 A 0 0 0 0 0 0 4 0 0 0 0 0 0 92 0 0 0 1 0 3 78 1 0 0.349 11 0.84
15 15 A 96 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.165 5 0.92
16 16 A 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 32 0 66 77 0 0 0.695 23 0.80
17 17 A 1 0 0 0 0 0 0 0 44 0 9 25 0 0 0 0 0 21 0 0 77 0 0 1.307 43 0.34
18 18 A 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.069 2 0.99
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 1 0 0 78 0 0 0.069 2 0.97
20 20 A 1 1 0 0 0 0 0 0 8 0 5 51 0 0 0 22 12 0 0 0 78 0 0 1.385 46 0.30
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 29 3 8 36 0 23 1 78 0 0 1.413 47 0.43
22 22 A 5 94 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.270 9 0.94
23 23 A 0 0 0 0 0 0 0 1 88 0 0 9 0 0 0 0 0 0 1 0 78 0 0 0.437 14 0.80
24 24 A 0 0 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 0 78 0 0 0.069 2 0.97
25 25 A 0 0 0 0 8 0 88 0 0 0 0 0 0 4 0 0 0 0 0 0 78 0 0 0.431 14 0.91
26 26 A 0 0 0 0 0 0 0 1 0 0 94 5 0 0 0 0 0 0 0 0 78 0 0 0.270 9 0.90
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 17 5 77 78 0 0 0.709 23 0.82
28 28 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 13 68 0 15 78 0 0 0.964 32 0.72
29 29 A 3 82 1 13 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.631 21 0.87
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 5 0 0 0 78 0 0 0.202 6 0.93
31 31 A 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 77 15 0 1 78 0 0 0.783 26 0.71
32 32 A 0 1 0 0 0 0 0 1 0 1 4 3 0 0 65 24 0 0 0 0 78 0 0 1.009 33 0.55
33 33 A 0 95 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.202 6 0.99
34 34 A 3 3 0 0 0 0 0 3 65 0 21 6 0 0 0 0 0 0 0 0 78 0 0 1.061 35 0.47
35 35 A 0 0 0 0 0 0 0 0 49 0 6 12 0 0 0 3 27 4 0 0 78 0 0 1.348 45 0.31
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76 24 0 0 0 0 78 0 0 0.555 18 0.76
37 37 A 0 95 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.202 6 0.98
38 38 A 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 13 81 0 0 78 0 0 0.612 20 0.75
39 39 A 1 0 0 4 0 0 0 0 56 0 5 0 0 0 0 0 3 29 0 1 78 0 0 1.166 38 0.39
40 40 A 0 71 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.606 20 0.75
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 79 0 0 0 0 78 0 0 0.507 16 0.79
42 42 A 0 0 0 0 0 0 0 0 6 0 4 0 0 0 0 0 0 82 0 8 78 0 0 0.661 22 0.74
43 43 A 0 0 0 0 0 0 0 29 0 0 18 0 0 0 0 22 0 0 29 1 78 0 0 1.416 47 0.32
44 44 A 0 0 0 0 0 0 0 79 6 6 6 0 0 0 0 0 0 0 1 0 78 0 0 0.767 25 0.70
45 45 A 0 0 0 0 0 0 0 73 2 2 12 12 0 0 0 0 0 0 0 0 60 0 0 0.865 28 0.63
46 46 A 0 0 0 0 0 0 0 0 73 6 18 2 0 0 0 0 0 0 0 0 49 0 0 0.788 26 0.58
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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