Complet list of 1g6e hssp file
Complete list of 1g6e.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1G6E
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER ANTIFUNGAL PROTEIN 04-NOV-00 1G6E
COMPND MOL_ID: 1; MOLECULE: ANTIFUNGAL PROTEIN; CHAIN: A; FRAGMENT: AFP1; ENG
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: STREPTOMYCES TENDAE; ORGANISM_TAXID: 1
AUTHOR R.CAMPOS-OLIVAS,C.BORMANN,I.HOERR,G.JUNG,A.M.GRONENBORN
DBREF 1G6E A 2 87 UNP Q9RCK8 Q9RCK8_STRTE 43 128
SEQLENGTH 87
NCHAIN 1 chain(s) in 1G6E data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q9RCK8_STRTE1GH5 1.00 1.00 2 87 43 128 86 0 0 128 Q9RCK8 Antifungal protein (Precursor) OS=Streptomyces tendae GN=afp PE=1 SV=1
2 : M3BRH4_STRMB 0.77 0.87 2 86 34 120 87 1 2 121 M3BRH4 Uncharacterized protein OS=Streptomyces mobaraensis NBRC 13819 = DSM 40847 GN=H340_02354 PE=4 SV=1
3 : B5H119_STRC2 0.75 0.91 1 86 4 91 88 1 2 92 B5H119 Putative uncharacterized protein OS=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) GN=SSCG_05293 PE=4 SV=1
4 : D5SL75_STRC2 0.75 0.91 1 86 37 124 88 1 2 125 D5SL75 Antifungal protein OS=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) GN=SCLAV_p1182 PE=4 SV=1
5 : L1L910_9ACTO 0.37 0.61 2 87 34 126 94 2 9 126 L1L910 Tat pathway signal sequence domain protein OS=Streptomyces ipomoeae 91-03 GN=STRIP9103_05036 PE=4 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 187 3 13 LL
2 2 A I + 0 0 11 6 0 IIIII
3 3 A N - 0 0 130 6 0 NNNNN
4 4 A R E -A 26 0A 171 6 0 RRRRR
5 5 A T E -A 25 0A 32 6 54 TTTTV
6 6 A D - 0 0 138 6 35 DNNND
7 7 A a - 0 0 37 6 0 CCCCC
8 8 A N + 0 0 108 6 46 NNNNG
9 9 A E S S- 0 0 114 6 59 EQQQN
10 10 A N S S+ 0 0 139 6 67 NNNNY
11 11 A S S S+ 0 0 31 6 59 SDDDG
12 12 A Y S S- 0 0 63 6 84 YYYYE
13 13 A L E +B 26 0A 3 6 13 LLFFF
14 14 A E E -B 25 0A 26 6 76 EEEEL
15 15 A I E -BC 24 42A 0 6 59 IIIIY
16 16 A H E > +BC 23 41A 45 6 67 HHHHF
17 17 A N H >> +BC 22 39A 12 6 42 NNNNE
18 18 A N H 45S- 0 0 75 6 54 NNNNT
19 19 A E H 45S- 0 0 162 6 47 ENNND
20 20 A G H <5S+ 0 0 50 6 0 GGGGG
21 21 A R T <5S+ 0 0 177 6 76 RRRRV
22 22 A D E - 0 0 74 6 76 NNNNV
57 57 A L T 5S+ 0 0 109 6 36 LELLL
58 58 A S T 5S+ 0 0 130 6 38 SSSSG
59 59 A D T 5S- 0 0 88 6 46 DDEEG
60 60 A P T 5 + 0 0 97 6 0 PPPPP
61 61 A R < - 0 0 131 6 46 RRRRQ
62 62 A L E -F 54 0B 69 6 59 LILLW
63 63 A E E -F 53 0B 62 6 21 EEEED
64 64 A T E -F 52 0B 104 6 50 TTTTS
65 65 A I E -F 51 0B 37 6 70 IVVVG
66 66 A T E -F 50 0B 72 6 67 TTTTR
67 67 A L E -F 49 0B 7 6 0 LLLLL
68 68 A Q > - 0 0 84 6 76 QGDDP
69 69 A K T 3 S- 0 0 100 6 0 KKKKK
70 70 A W T 3 S+ 0 0 164 6 16 WWWWY
71 71 A G E < -D 44 0A 17 6 124 GSRRY
72 72 A S E -D 43 0A 47 6 66 SQSSA
73 73 A W E +D 42 0A 25 6 8 WWWWF
74 74 A N + 0 0 101 6 54 NNQQD
75 75 A P - 0 0 47 6 76 PPPPL
76 76 A G S S- 0 0 55 6 0 Ggggg
77 77 A H - 0 0 113 6 103 Hyssk
78 78 A I - 0 0 11 6 27 ILIIV
79 79 A H S S- 0 0 45 6 0 HHHHH
80 80 A E E - G 0 54B 20 6 62 EKRRK
81 81 A I E - G 0 53B 0 6 14 IIVVI
82 82 A L E - 0 0B 51 6 97 LLTTE
83 83 A S E - G 0 52B 28 6 100 SWWWQ
84 84 A I E -EG 32 51B 1 6 0 IIIII
85 85 A R E -EG 31 50B 124 6 73 RKRRT
86 86 A I E G 0 49B 17 6 0 IIIII
87 87 A Y 0 0 160 3 0 Y Y
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 67 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.87
2 2 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
5 5 A 17 0 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.45
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 6 0 0 0.693 23 0.64
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.54
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 33 17 0 6 0 0 1.011 33 0.40
10 10 A 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.32
11 11 A 0 0 0 0 0 0 0 17 0 0 33 0 0 0 0 0 0 0 0 50 6 0 0 1.011 33 0.40
12 12 A 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 0 17 0 0 6 0 0 0.451 15 0.16
13 13 A 0 50 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.693 23 0.87
14 14 A 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 0 6 0 0 0.451 15 0.24
15 15 A 0 0 83 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.41
16 16 A 0 0 0 0 17 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 6 0 0 0.451 15 0.32
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 83 0 6 0 0 0.451 15 0.58
18 18 A 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.45
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 50 17 6 0 0 1.011 33 0.52
20 20 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
21 21 A 17 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 6 0 0 0.451 15 0.24
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 83 6 0 0 0.451 15 0.66
23 23 A 0 0 0 0 0 0 0 0 0 17 0 83 0 0 0 0 0 0 0 0 6 1 0 0.451 15 0.49
24 24 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
26 26 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 0 0 33 50 0 0 0 0 0 17 0 0 6 0 0 1.011 33 0.38
32 32 A 0 0 17 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.62
33 33 A 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 17 6 0 0 0.451 15 0.41
34 34 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
36 36 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
39 39 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
40 40 A 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.54
41 41 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
42 42 A 50 0 33 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.55
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 6 0 0 0.451 15 0.58
44 44 A 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.49
45 45 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
48 48 A 67 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 17 0 0 6 0 0 0.868 28 0.13
49 49 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 17 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.49
51 51 A 0 33 0 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.89
52 52 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 50 33 0 0 6 0 0 1.011 33 0.37
53 53 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
54 54 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 83 0 0 0 6 0 0 0.451 15 0.54
55 55 A 0 0 0 0 0 0 0 0 0 0 0 17 0 0 83 0 0 0 0 0 6 0 0 0.451 15 0.32
56 56 A 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.24
57 57 A 0 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 6 0 0 0.451 15 0.63
58 58 A 0 0 0 0 0 0 0 17 0 0 83 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.62
59 59 A 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 33 0 50 6 0 0 1.011 33 0.54
60 60 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
61 61 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 17 0 0 0 6 0 0 0.451 15 0.54
62 62 A 0 67 17 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.868 28 0.41
63 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 17 6 0 0 0.451 15 0.79
64 64 A 0 0 0 0 0 0 0 0 0 0 17 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.49
65 65 A 50 0 33 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.29
66 66 A 0 0 0 0 0 0 0 0 0 0 0 83 0 0 17 0 0 0 0 0 6 0 0 0.451 15 0.32
67 67 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
68 68 A 0 0 0 0 0 0 0 17 0 17 0 0 0 0 0 0 33 0 0 33 6 0 0 1.330 44 0.23
69 69 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
70 70 A 0 0 0 0 0 83 17 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.83
71 71 A 0 0 0 0 0 0 17 33 0 0 17 0 0 0 33 0 0 0 0 0 6 0 0 1.330 44 -0.25
72 72 A 0 0 0 0 0 0 0 0 17 0 67 0 0 0 0 0 17 0 0 0 6 0 0 0.868 28 0.33
73 73 A 0 0 0 0 17 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.92
74 74 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 50 17 6 0 0 1.011 33 0.46
75 75 A 0 17 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.24
76 76 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 4 0.000 0 1.00
77 77 A 0 0 0 0 0 0 17 0 0 0 33 0 0 33 0 17 0 0 0 0 6 0 0 1.330 44 -0.03
78 78 A 17 17 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.868 28 0.72
79 79 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 6 0 0 0.000 0 1.00
80 80 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 33 0 33 0 0 6 0 0 1.099 36 0.38
81 81 A 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.86
82 82 A 0 50 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 17 0 0 6 0 0 1.011 33 0.03
83 83 A 0 0 0 0 0 50 0 0 0 0 33 0 0 0 0 0 17 0 0 0 6 0 0 1.011 33 -0.00
84 84 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
85 85 A 0 0 0 0 0 0 0 0 0 0 0 17 0 0 67 17 0 0 0 0 6 0 0 0.868 28 0.27
86 86 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
87 87 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
2 76 109 2 gQPy
3 77 80 2 gQPs
4 77 113 2 gQPs
5 75 108 8 gRASGSPTGk
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