Complet list of 1g1p hssp file
Complete list of 1g1p.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1G1P
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER TOXIN 13-OCT-00 1G1P
COMPND MOL_ID: 1; MOLECULE: CONOTOXIN EVIA; CHAIN: A; ENGINEERED: YES; OTHER_
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE SOLID PHASE SYNTHESIS OF
AUTHOR L.VOLPON,H.LAMTHANH,J.BARBIER,N.GILLES,J.MOLGO,A.MENEZ, J.M.LANCELIN
DBREF 1G1P A 1 32 UNP P60513 CXD6A_CONER 1 32
SEQLENGTH 32
NCHAIN 1 chain(s) in 1G1P data set
NALIGN 14
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CO6A_CONER 1G1P 0.97 0.97 1 32 1 32 32 0 0 32 P60513 Delta-conotoxin EVIA OS=Conus ermineus PE=1 SV=1
2 : CO6A_CONPE 0.52 0.76 2 30 46 74 29 0 0 78 P56712 Omega-conotoxin PnVIA OS=Conus pennaceus PE=1 SV=2
3 : CO134_CONMR 0.50 0.71 2 29 56 83 28 0 0 88 Q3YEF1 Conotoxin MaIr34 OS=Conus marmoreus PE=2 SV=1
4 : U3L0I0_CONFL 0.50 0.71 3 30 61 88 28 0 0 91 U3L0I0 O1-conotoxin peptide Fla6.6 (Fragment) OS=Conus flavidus GN=Fla6.6 PE=2 SV=1
5 : U6BZD3_CONMR 0.50 0.71 2 29 57 84 28 0 0 90 U6BZD3 Mr_precursor_031 OS=Conus marmoreus PE=3 SV=1
6 : U6BZE3_CONMR 0.50 0.71 2 29 57 84 28 0 0 89 U6BZE3 Mr_precursor_030 OS=Conus marmoreus PE=3 SV=1
7 : U6BZI2_CONMR 0.50 0.71 2 29 57 84 28 0 0 89 U6BZI2 Mr_precursor_116 OS=Conus marmoreus PE=3 SV=1
8 : U6BZJ0_CONMR 0.50 0.71 2 29 57 84 28 0 0 89 U6BZJ0 Mr_precursor_115 OS=Conus marmoreus PE=3 SV=1
9 : U6BZJ3_CONMR 0.50 0.70 2 31 57 86 30 0 0 93 U6BZJ3 Mr_precursor_120 OS=Conus marmoreus PE=3 SV=1
10 : U6BZK0_CONMR 0.50 0.71 2 29 52 79 28 0 0 101 U6BZK0 Mr_precursor_146 OS=Conus marmoreus PE=3 SV=1
11 : U6BZK8_CONMR 0.50 0.71 2 29 52 79 28 0 0 84 U6BZK8 Mr_precursor_145 OS=Conus marmoreus PE=3 SV=1
12 : U6BZW5_CONMR 0.50 0.71 2 29 57 84 28 0 0 93 U6BZW5 Mr_precursor_119 OS=Conus marmoreus PE=3 SV=1
13 : U6C1T8_CONMR 0.50 0.71 2 29 57 84 28 0 0 89 U6C1T8 Mr_precursor_117 OS=Conus marmoreus PE=3 SV=1
14 : U6C2C8_CONMR 0.50 0.71 2 29 57 84 28 0 0 89 U6C2C8 Mr_precursor_118 OS=Conus marmoreus PE=3 SV=1
## ALIGNMENTS 1 - 14
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 208 2 0 D
2 2 A D - 0 0 132 14 41 DGE EEEEEEEEEE
3 3 A a - 0 0 52 15 0 CCCCCCCCCCCCCC
4 4 A I B -a 20 0A 25 15 48 ILLYLLLLLLLLLL
5 5 A K > - 0 0 158 15 54 KEEDEEEEEEEEEE
6 6 A X T 3 S+ 0 0 57 14 76 PVAVAAAAAAAAAA
7 7 A Y T 3 S+ 0 0 168 15 90 YDDGDDDDDDDDDD
8 8 A G S < S- 0 0 15 15 113 GYYDYYYYYYYYYY
9 9 A F B +C 28 0B 160 15 5 FFYFYYYYYYYYYY
10 10 A b + 0 0 3 15 0 CCCCCCCCCCCCCC
11 11 A S + 0 0 81 15 91 SGVGVVVVVVVVVV
12 12 A L - 0 0 72 15 22 LILILLLLLLLLLL
13 13 A P S S+ 0 0 132 15 0 PPPPPPPPPPPPPP
14 14 A I S S- 0 0 100 15 30 IFFFFFFFFFFFFF
15 15 A L S S+ 0 0 152 15 50 LAVIVVVVVVVVVV
16 16 A K S S+ 0 0 194 15 92 KNGKGGSGGGGGGG
17 17 A N + 0 0 69 15 0 NNNNNNNNNNNNNN
18 18 A G + 0 0 13 15 0 GGGGGGGGGGGGGG
19 19 A L - 0 0 106 15 44 LLMNMMMMMMMMMM
20 20 A c B > -aB 4 23A 13 15 0 CCCCCCCCCCCCCC
21 21 A a T 3 S+ 0 0 87 15 0 CCCCCCCCCCCCCC
22 22 A S T 3 S- 0 0 35 15 0 SSSSSSSSSSSSSS
23 23 A G B < S+B 20 0A 52 15 25 GGGQGGGGGGGGGG
24 24 A A - 0 0 39 15 91 ANIFIIIIIIIIII
25 25 A b B +D 29 0C 60 15 0 CCCCCCCCCCCCCC
26 26 A V S S- 0 0 114 15 0 VVVVVVVVVVVVVV
27 27 A G S S+ 0 0 28 15 80 GFFFFFFFFFFFFF
28 28 A V B S-C 9 0B 59 15 0 VVVVVVVVVVVVVV
29 29 A c B +D 25 0C 0 15 0 CCCCCCCCCCCCCC
30 30 A A - 0 0 22 5 76 AT T I
31 31 A D 0 0 84 3 0 D D
32 32 A L 0 0 211 2 0 L
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 79 0 14 14 0 0 0.656 21 0.59
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
4 4 A 0 80 13 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.628 20 0.51
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 80 0 7 15 0 0 0.628 20 0.46
6 6 A 14 0 0 0 0 0 0 0 79 7 0 0 0 0 0 0 0 0 0 0 14 0 0 0.656 21 0.23
7 7 A 0 0 0 0 0 0 13 7 0 0 0 0 0 0 0 0 0 0 0 80 15 0 0 0.628 20 0.09
8 8 A 0 0 0 0 0 0 80 13 0 0 0 0 0 0 0 0 0 0 0 7 15 0 0 0.628 20 -0.14
9 9 A 0 0 0 0 27 0 73 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.580 19 0.94
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
11 11 A 73 0 0 0 0 0 0 13 0 0 13 0 0 0 0 0 0 0 0 0 15 0 0 0.765 25 0.09
12 12 A 0 87 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.393 13 0.78
13 13 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
14 14 A 0 0 13 0 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.393 13 0.69
15 15 A 73 13 7 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.857 28 0.49
16 16 A 0 0 0 0 0 0 0 67 0 0 7 0 0 0 0 20 0 0 7 0 15 0 0 0.953 31 0.07
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 15 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
19 19 A 0 20 0 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 15 0 0 0.730 24 0.56
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 93 0 0 0 0 0 0 0 0 7 0 0 0 15 0 0 0.245 8 0.74
24 24 A 0 0 73 0 7 0 0 0 13 0 0 0 0 0 0 0 0 0 7 0 15 0 0 0.857 28 0.08
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
26 26 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
27 27 A 0 0 0 0 87 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.393 13 0.20
28 28 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 15 0 0 0.000 0 1.00
30 30 A 0 0 20 0 0 0 0 0 40 0 0 40 0 0 0 0 0 0 0 0 5 0 0 1.055 35 0.24
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3 0 0 0.000 0 1.00
32 32 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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