Complet list of 1fu3 hssp file
Complete list of 1fu3.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1FU3
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER METAL TRANSPORT INHIBITOR 14-SEP-00 1FU3
COMPND MOL_ID: 1; MOLECULE: DELTA-CONOTOXIN TXVIA; CHAIN: A; SYNONYM: TXIA, C
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURAL
AUTHOR T.KOHNO,T.SASAKI,M.FAINZILBER,K.SATO
DBREF 1FU3 A 1 27 UNP P18511 CXDA_CONTE 52 78
SEQLENGTH 27
NCHAIN 1 chain(s) in 1FU3 data set
NALIGN 17
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CO16A_CONTE 1FU3 1.00 1.00 1 27 52 78 27 0 0 78 P18511 Delta-conotoxin TxVIA OS=Conus textile PE=1 SV=1
2 : CO16B_CONTE 1.00 1.00 1 27 52 78 27 0 0 78 Q9U655 Delta-conotoxin TxVIA OS=Conus textile PE=1 SV=1
3 : CO161_CONAJ 0.96 1.00 1 27 52 78 27 0 0 78 P0CB09 Delta-conotoxin-like Ai6.1 OS=Conus ammiralis PE=2 SV=1
4 : O1613_CONTE 0.96 1.00 1 27 52 78 27 0 0 78 Q9U656 Conotoxin TxMKLT1-0111 OS=Conus textile PE=2 SV=1
5 : CO6B_CONTE 0.93 1.00 1 27 1 27 27 0 0 27 P24159 Delta-conotoxin TxVIB OS=Conus textile PE=1 SV=1
6 : CO132_CONMR 0.52 0.78 1 27 50 76 27 0 0 76 Q3YED5 Conotoxin MaIr332 OS=Conus marmoreus PE=2 SV=1
7 : F6LPN0_CONMR 0.52 0.85 1 27 51 77 27 0 0 77 F6LPN0 Conotoxin Mr6.6 OS=Conus marmoreus PE=3 SV=1
8 : U6BZG9_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6BZG9 Mr_precursor_096 OS=Conus marmoreus PE=3 SV=1
9 : U6BZH3_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6BZH3 Mr_precursor_101 OS=Conus marmoreus PE=3 SV=1
10 : U6BZH8_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6BZH8 Mr_precursor_095 OS=Conus marmoreus PE=3 SV=1
11 : U6BZI1_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6BZI1 Mr_precursor_100 OS=Conus marmoreus PE=3 SV=1
12 : U6BZK5_CONMR 0.52 0.78 1 27 46 72 27 0 0 72 U6BZK5 Mr_precursor_140 OS=Conus marmoreus PE=3 SV=1
13 : U6BZV2_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6BZV2 Mr_precursor_099 OS=Conus marmoreus PE=3 SV=1
14 : U6C1S1_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6C1S1 Mr_precursor_097 OS=Conus marmoreus PE=3 SV=1
15 : U6C1S6_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6C1S6 Mr_precursor_102 OS=Conus marmoreus PE=3 SV=1
16 : U6C1V1_CONMR 0.52 0.78 1 27 45 71 27 0 0 71 U6C1V1 Mr_precursor_132 OS=Conus marmoreus PE=3 SV=1
17 : U6C2B2_CONMR 0.52 0.78 1 27 51 77 27 0 0 77 U6C2B2 Mr_precursor_098 OS=Conus marmoreus PE=3 SV=1
## ALIGNMENTS 1 - 17
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A W 0 0 260 18 5 WWWWWRRRRRRRRRRRR
2 2 A a - 0 0 63 18 0 CCCCCCCCCCCCCCCCC
3 3 A K B -a 16 0A 61 18 105 KKKKKLLLLLLLLLLLL
4 4 A Q > - 0 0 149 18 49 QQQQQDDDDDDDDNDDD
5 5 A S T 3 S+ 0 0 55 18 58 SSSSSGAGGGGGGGGGG
6 6 A G T 3 S+ 0 0 43 18 0 GGGGGGGGGGGGGGGGG
7 7 A E S < S- 0 0 104 18 0 EEEEEEEEEEEEEEEEE
8 8 A M B S+B 25 0B 144 18 53 MMMMMIMIIIIIIIIII
9 9 A b - 0 0 8 18 0 CCCCCCCCCCCCCCCCC
10 10 A N - 0 0 81 18 68 NNNNNGDGGGGGGGGGG
11 11 A L S S+ 0 0 122 18 40 LLLLVILIIIIIIIIII
12 12 A L S S+ 0 0 155 18 3 LLLLLLFLLLLLLLLLL
13 13 A D S S+ 0 0 119 18 150 DDDDDFNFFFFFFFFFF
14 14 A Q - 0 0 54 18 79 QQQQQPSPPPPPPPPPP
15 15 A N + 0 0 87 18 78 NNNNNSKSSSSSSSSSS
16 16 A c B -a 3 0A 14 18 0 CCCCCCCCCCCCCCCCC
17 17 A a S S- 0 0 75 18 0 CCCCCCCCCCCCCCCCC
18 18 A D S S+ 0 0 152 18 76 DDEDDSSSSSSSSSSSS
19 19 A G S S- 0 0 27 18 0 GGGGGGGGGGGGGGGGG
20 20 A Y - 0 0 174 18 23 YYYYYWWWWWWWWWWWW
21 21 A b E -C 26 0B 12 18 0 CCCCCCCCCCCCCCCCC
22 22 A I E > -C 25 0B 80 18 0 IIIIIIIIIIIIIIIII
23 23 A V T 3 S- 0 0 113 18 4 VVVVVVIVVVVVVVVVV
24 24 A L T 3 S+ 0 0 101 18 6 LLLFFLLLLLLLLLLLL
25 25 A V E < S-BC 8 22B 66 18 0 VVVVVVVVVVVVVVVVV
26 26 A c E C 0 21B 3 18 0 CCCCCCCCCCCCCCCCC
27 27 A T 0 0 99 18 64 TTTTTAAAAAAAAAAAA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 33 0 0 0 0 0 0 0 0 67 0 0 0 0 0 18 0 0 0.637 21 0.94
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
3 3 A 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 18 0 0 0.637 21 -0.06
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 6 61 18 0 0 0.828 27 0.50
5 5 A 0 0 0 0 0 0 0 61 6 0 33 0 0 0 0 0 0 0 0 0 18 0 0 0.828 27 0.41
6 6 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 18 0 0 0.000 0 1.00
8 8 A 0 0 61 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.668 22 0.46
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 61 0 0 0 0 0 0 0 0 0 0 33 6 18 0 0 0.828 27 0.32
11 11 A 6 33 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.828 27 0.60
12 12 A 0 94 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.215 7 0.97
13 13 A 0 0 0 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 6 33 18 0 0 0.828 27 -0.51
14 14 A 0 0 0 0 0 0 0 0 0 61 6 0 0 0 0 0 33 0 0 0 18 0 0 0.828 27 0.21
15 15 A 0 0 0 0 0 0 0 0 0 0 61 0 0 0 0 6 0 0 33 0 18 0 0 0.828 27 0.22
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 6 0 28 18 0 0 0.787 26 0.23
19 19 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 67 33 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.637 21 0.76
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
22 22 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
23 23 A 94 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.215 7 0.96
24 24 A 0 89 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.349 11 0.94
25 25 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 18 0 0 0.637 21 0.35
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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