Complet list of 1fgp hssp file
Complete list of 1fgp.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1FGP
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER VIRAL PROTEIN 10-DEC-96 1FGP
COMPND MOL_ID: 1; MOLECULE: FD GENE 3 PROTEIN; CHAIN: A; FRAGMENT: DOMAIN 1;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE FD; ORGANISM_TAXI
AUTHOR P.HOLLIGER,L.RIECHMANN
DBREF 1FGP A 1 66 UNP P03661 COATA_BPFD 20 85
SEQLENGTH 70
NCHAIN 1 chain(s) in 1FGP data set
NALIGN 18
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A7BJW8_BPF1 0.96 0.99 1 69 20 88 69 0 0 424 A7BJW8 III OS=Enterobacteria phage f1 GN=III PE=4 SV=1
2 : G3P_BPF1 0.96 0.99 1 69 20 88 69 0 0 424 P69169 Attachment protein G3P OS=Enterobacteria phage f1 GN=III PE=3 SV=1
3 : G3P_BPFD 3KNQ 0.96 0.99 1 69 20 88 69 0 0 424 P03661 Attachment protein G3P OS=Enterobacteria phage fd GN=III PE=1 SV=1
4 : G3P_BPM13 1TOL 0.96 0.99 1 69 20 88 69 0 0 424 P69168 Attachment protein G3P OS=Enterobacteria phage M13 GN=III PE=1 SV=1
5 : G4WZN3_BPF1 0.96 0.99 1 69 20 88 69 0 0 424 G4WZN3 III protein OS=Enterobacteria phage f1 GN=III PE=4 SV=1
6 : J7I0P3_BPM13 0.96 0.99 1 69 20 88 69 0 0 424 J7I0P3 Structural protein OS=Enterobacteria phage M13 GN=III PE=4 SV=1
7 : G1K451_BPM13 0.95 0.98 11 69 45 103 59 0 0 439 G1K451 Attachment protein G3P OS=Enterobacteria phage M13 PE=4 SV=1
8 : G1K453_BPM13 0.95 0.98 11 69 44 102 59 0 0 438 G1K453 Attachment protein G3P OS=Enterobacteria phage M13 PE=4 SV=1
9 : D0U161_BPF1 0.94 0.97 1 69 20 88 69 0 0 424 D0U161 III OS=Enterobacteria phage f1 GN=III PE=4 SV=1
10 : D0U171_BPF1 0.94 0.99 1 69 20 88 69 0 0 424 D0U171 III OS=Enterobacteria phage f1 GN=III PE=4 SV=1
11 : D0U181_BPF1 0.94 0.99 1 69 20 88 69 0 0 424 D0U181 III OS=Enterobacteria phage f1 GN=III PE=4 SV=1
12 : G4WZP3_BPF1 0.94 0.99 1 69 20 88 69 0 0 424 G4WZP3 III protein OS=Enterobacteria phage f1 GN=III PE=4 SV=1
13 : G4WZQ3_BPF1 0.94 0.99 1 69 20 88 69 0 0 424 G4WZQ3 III protein OS=Enterobacteria phage f1 GN=III PE=4 SV=1
14 : G1K450_BPM13 0.90 0.93 1 69 20 92 73 1 4 428 G1K450 Attachment protein G3P OS=Enterobacteria phage M13 PE=4 SV=1
15 : G1K452_BPM13 0.80 0.87 3 69 26 96 71 1 4 432 G1K452 Attachment protein G3P OS=Enterobacteria phage M13 PE=4 SV=1
16 : L4KWB2_ECOLX 0.49 0.56 4 60 137 191 57 1 2 414 L4KWB2 Uncharacterized protein OS=Escherichia coli KTE192 GN=A13U_01910 PE=4 SV=1
17 : D2U3R6_9ENTR 0.37 0.51 1 68 22 86 68 2 3 288 D2U3R6 Putative uncharacterized protein OS=Arsenophonus nasoniae GN=ARN_33030 PE=4 SV=1
18 : G3P_BPI22 0.34 0.49 4 69 137 202 67 2 2 434 P15415 Attachment protein G3P OS=Enterobacteria phage I2-2 GN=III PE=3 SV=1
## ALIGNMENTS 1 - 18
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 123 14 27 EEEEEE EEEEEE D
2 2 A T >> - 0 0 77 14 72 TTTTTT TTTTTT D
3 3 A V H 3> S+ 0 0 70 15 89 VVVVVV VVVVVVL E
4 4 A E H 3> S+ 0 0 153 17 35 EEEEEE EEEEEEAEKE
5 5 A S H <> S+ 0 0 61 17 92 SSSSSS SSSSSSKIDI
6 6 A a H < S+ 0 0 2 17 0 CCCCCC CCCCCCCCCC
7 7 A L H < S+ 0 0 53 17 70 LLLLLL LLLLLLMELE
8 8 A A H < S+ 0 0 80 17 6 AAAAAA AAAAAAGAAA
9 9 A K S < S- 0 0 71 17 16 KKKKKK KKKKKKCKKK
10 10 A P - 0 0 82 17 13 PPPPPP PPPPPpiPPP
11 11 A H S S- 0 0 103 18 91 HHHHHHHHHRHRHhhPI.
12 12 A T E S+A 56 0A 17 19 74 TTTTTTTTTTTTTTTEEP
13 13 A E E +A 55 0A 128 19 63 EEEEEEEEEEEEEEEEAI
14 14 A N E S-A 54 0A 56 19 59 NNNNNNNNNNNNNNNGKD
15 15 A S E -A 53 0A 40 19 71 SSSSSSSSSSSSSSSVTG
16 16 A F E -A 52 0A 55 19 31 FFFFFFFFFFFFFFFFYV
17 17 A T S S+ 0 0 58 19 86 TTTTTTTTTTTTTTTNSF
18 18 A N S S+ 0 0 119 19 0 NNNNNNNNNNNNNNNNNN
19 19 A V - 0 0 15 19 67 VVVVVVVVVVVVVVVVTN
20 20 A W E -B 29 0A 65 19 64 WWWWWWWWWWWWWWWYYV
21 21 A K E -B 28 0A 110 19 50 KKKKKKKKKKKKKKKSKS
22 22 A D E >> -B 27 0A 41 18 87 DDDDDDDDDDDDDDDY.K
23 23 A D T 45S+ 0 0 106 18 25 DDDDDDDDDDDDDDDD.G
24 24 A K T 45S+ 0 0 155 19 88 KKKKKKKKKKKKKKKGID
25 25 A T T 45S- 0 0 11 19 72 TTTTTTTTTTTTTTTDGE
26 26 A L T <5 + 0 0 125 19 113 LLLLLLLLLLLLLLLRSG
27 27 A D E - C 0 35A 109 19 2 YYYYYYYYYYYYYYYYFY
33 33 A E T 3 S+ 0 0 173 19 38 EEEEEEEEEEEEEEENEN
34 34 A G T 3 S+ 0 0 29 19 0 GGGGGGGGGGGGGGGGGG
35 35 A a E < -C 32 0A 6 19 0 CCCCCCCCCCCCCCCCCC
36 36 A L E -CD 31 60A 0 19 99 LLLLLLLLLLLLLLLEQE
37 37 A W E -CD 30 58A 2 19 22 WWWWWWWWWWWWWWWYYY
38 38 A N E -CD 29 57A 6 19 76 NNNNNNNNNNNNNNNEIE
39 39 A A E -CD 28 56A 0 19 0 AAAAAAAAAAAAAAAAAA
40 40 A T E - 0 0A 94 19 28 TTTTTTTTTTTTTTTTKT
41 41 A G E S+ 0 0A 46 19 0 GGGGGGGGGGGGGGGGGG
42 42 A V E + 0 0A 133 19 0 VVVVVVVVVVVVVVVVVV
43 43 A V E - D 0 54A 16 19 43 VVVVVVVVVVVVVVVIIT
44 44 A V E - D 0 53A 105 19 0 VVVVVVVVVVVVVVVVVV
45 45 A b E + D 0 52A 39 19 28 CCCCCCCCCCCCCCCCGC
46 46 A T E >> + D 0 51A 91 19 83 TTTTTTTTTTTTTTTQGQ
47 47 A G T >45S- 0 0 39 19 30 GGGGGGGGGGSGSGGGGN
48 48 A D T 345S- 0 0 151 19 0 DDDDDDDDDDDDDDDDDD
49 49 A E T 345S+ 0 0 108 19 56 EEEEEEEEEEEEEEEGGG
50 50 A T T <<5S+ 0 0 52 19 0 TTTTTTTTTTTTTTTTTT
51 51 A Q E