Complet list of 1fex hssp file
Complete list of 1fex.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1FEX
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER STRUCTURAL PROTEIN 24-JUL-00 1FEX
COMPND MOL_ID: 1; MOLECULE: TRF2-INTERACTING TELOMERIC RAP1 PROTEIN; CHAIN: A
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY
AUTHOR S.HANAOKA,Y.NISHIMURA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE
DBREF 1FEX A 1 59 UNP Q9NYB0 TE2IP_HUMAN 132 190
SEQLENGTH 59
NCHAIN 1 chain(s) in 1FEX data set
NALIGN 57
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F6W1N3_MACMU 1.00 1.00 1 59 132 190 59 0 0 400 F6W1N3 Telomeric repeat-binding factor 2-interacting protein 1 OS=Macaca mulatta GN=LOC100430600 PE=2 SV=1
2 : G2HG79_PANTR 1.00 1.00 1 59 132 190 59 0 0 399 G2HG79 Telomeric repeat-binding factor 2-interacting protein 1 OS=Pan troglodytes PE=2 SV=1
3 : G3QRY6_GORGO 1.00 1.00 1 59 132 190 59 0 0 389 G3QRY6 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101140126 PE=4 SV=1
4 : G3SE84_GORGO 1.00 1.00 1 59 132 190 59 0 0 399 G3SE84 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101140126 PE=4 SV=1
5 : H2QBJ4_PANTR 1.00 1.00 1 59 132 190 59 0 0 399 H2QBJ4 Telomeric repeat binding factor 2, interacting protein OS=Pan troglodytes GN=TERF2IP PE=2 SV=1
6 : H9FW08_MACMU 1.00 1.00 1 59 132 190 59 0 0 399 H9FW08 Telomeric repeat-binding factor 2-interacting protein 1 OS=Macaca mulatta GN=TERF2IP PE=2 SV=1
7 : I3MTX0_SPETR 1.00 1.00 1 59 132 190 59 0 0 396 I3MTX0 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=TERF2IP PE=4 SV=1
8 : I7G946_MACFA 1.00 1.00 1 59 132 190 59 0 0 398 I7G946 Macaca fascicularis brain cDNA clone: QorA-10568, similar to human telomeric repeat binding factor 2, interacting protein(TERF2IP), mRNA, RefSeq: NM_018975.1 OS=Macaca fascicularis PE=2 SV=1
9 : I7GK48_MACFA 1.00 1.00 1 59 132 190 59 0 0 241 I7GK48 Macaca fascicularis brain cDNA clone: QorA-12585, similar to human telomeric repeat binding factor 2, interacting protein(TERF2IP), mRNA, RefSeq: NM_018975.1 OS=Macaca fascicularis PE=2 SV=1
10 : TE2IP_HUMAN 1.00 1.00 1 59 132 190 59 0 0 399 Q9NYB0 Telomeric repeat-binding factor 2-interacting protein 1 OS=Homo sapiens GN=TERF2IP PE=1 SV=1
11 : TE2IP_MACFA 1.00 1.00 1 59 132 190 59 0 0 400 Q4R4I0 Telomeric repeat-binding factor 2-interacting protein 1 OS=Macaca fascicularis GN=TERF2IP PE=2 SV=1
12 : D2HY19_AILME 0.98 0.98 1 59 125 183 59 0 0 392 D2HY19 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100478443 PE=4 SV=1
13 : L5KXC7_PTEAL 0.98 1.00 1 59 131 189 59 0 0 396 L5KXC7 Telomeric repeat-binding factor 2-interacting protein 1 OS=Pteropus alecto GN=PAL_GLEAN10011117 PE=4 SV=1
14 : E2RSQ7_CANFA 0.97 0.98 1 59 136 194 59 0 0 403 E2RSQ7 Uncharacterized protein OS=Canis familiaris GN=TERF2IP PE=4 SV=1
15 : F7IE94_CALJA 0.97 1.00 1 59 132 190 59 0 0 399 F7IE94 Telomeric repeat-binding factor 2-interacting protein 1 OS=Callithrix jacchus GN=TERF2IP PE=2 SV=1
16 : F7IEA0_CALJA 0.97 1.00 1 59 132 190 59 0 0 389 F7IEA0 Uncharacterized protein OS=Callithrix jacchus GN=TERF2IP PE=4 SV=1
17 : G9KSX8_MUSPF 0.97 0.98 1 59 134 192 59 0 0 400 G9KSX8 Telomeric repeat binding factor 2, interacting protein (Fragment) OS=Mustela putorius furo PE=2 SV=1
18 : H0WT34_OTOGA 0.97 1.00 1 59 132 190 59 0 0 396 H0WT34 Uncharacterized protein OS=Otolemur garnettii GN=TERF2IP PE=4 SV=1
19 : L9KJT1_TUPCH 0.97 1.00 2 59 131 188 58 0 0 394 L9KJT1 Telomeric repeat-binding factor 2-interacting protein 1 OS=Tupaia chinensis GN=TREES_T100001606 PE=4 SV=1
20 : M3YEN6_MUSPF 0.97 0.98 1 59 134 192 59 0 0 401 M3YEN6 Uncharacterized protein OS=Mustela putorius furo GN=TERF2IP PE=4 SV=1
21 : Q8BPK1_MOUSE 0.97 1.00 1 59 129 187 59 0 0 278 Q8BPK1 Putative uncharacterized protein OS=Mus musculus GN=Terf2ip PE=2 SV=1
22 : TE2IP_MOUSE 0.97 1.00 1 59 129 187 59 0 0 393 Q91VL8 Telomeric repeat-binding factor 2-interacting protein 1 OS=Mus musculus GN=Terf2ip PE=1 SV=1
23 : TE2IP_RAT 0.97 1.00 1 59 129 187 59 0 0 393 Q5EAN7 Telomeric repeat-binding factor 2-interacting protein 1 OS=Rattus norvegicus GN=Terf2ip PE=2 SV=1
24 : U3FUA6_CALJA 0.97 1.00 1 59 132 190 59 0 0 398 U3FUA6 Telomeric repeat-binding factor 2-interacting protein 1 OS=Callithrix jacchus GN=TERF2IP PE=2 SV=1
25 : U6D7S3_NEOVI 0.97 0.98 1 59 14 72 59 0 0 183 U6D7S3 Telomeric repeat-binding factor 2-interacting protein 1 (Fragment) OS=Neovison vison GN=TE2IP PE=2 SV=1
26 : F1S459_PIG 0.95 1.00 1 59 135 193 59 0 0 401 F1S459 Uncharacterized protein OS=Sus scrofa GN=TERF2IP PE=4 SV=2
27 : G1PRK7_MYOLU 0.92 0.97 1 59 132 190 59 0 0 407 G1PRK7 Uncharacterized protein OS=Myotis lucifugus GN=TERF2IP PE=4 SV=1
28 : G1T9Q1_RABIT 0.92 0.98 1 59 133 191 59 0 0 325 G1T9Q1 Uncharacterized protein OS=Oryctolagus cuniculus GN=TERF2IP PE=4 SV=2
29 : G5B5Y7_HETGA 0.92 1.00 1 59 131 189 59 0 0 464 G5B5Y7 Telomeric repeat-binding factor 2-interacting protein 1 OS=Heterocephalus glaber GN=GW7_15484 PE=4 SV=1
30 : H0W1G1_CAVPO 0.92 1.00 1 59 131 189 59 0 0 395 H0W1G1 Uncharacterized protein OS=Cavia porcellus GN=TERF2IP PE=4 SV=1
31 : L5MCP5_MYODS 0.92 0.97 1 59 132 190 59 0 0 405 L5MCP5 Telomeric repeat-binding factor 2-interacting protein 1 OS=Myotis davidii GN=MDA_GLEAN10016739 PE=4 SV=1
32 : G3I4N2_CRIGR 0.90 1.00 1 59 129 187 59 0 0 393 G3I4N2 Telomeric repeat-binding factor 2-interacting protein 1 OS=Cricetulus griseus GN=I79_018415 PE=4 SV=1
33 : K9IK79_DESRO 0.90 0.98 1 59 133 191 59 0 0 397 K9IK79 Putative telomeric repeat-binding factor 2-interacting protein 1 OS=Desmodus rotundus PE=2 SV=1
34 : W5PAP1_SHEEP 0.90 0.98 1 59 102 160 59 0 0 367 W5PAP1 Uncharacterized protein OS=Ovis aries GN=TERF2IP PE=4 SV=1
35 : F6PMP4_HORSE 0.89 1.00 3 59 1 57 57 0 0 144 F6PMP4 Uncharacterized protein OS=Equus caballus GN=TERF2IP PE=4 SV=1
36 : G3UE66_LOXAF 0.88 0.95 1 59 132 190 59 0 0 396 G3UE66 Uncharacterized protein OS=Loxodonta africana GN=TERF2IP PE=4 SV=1
37 : TE2IP_BOVIN 0.88 0.98 1 59 134 192 59 0 0 399 Q0VCT3 Telomeric repeat-binding factor 2-interacting protein 1 OS=Bos taurus GN=TERF2IP PE=2 SV=1
38 : F6RGE1_ORNAN 0.78 0.95 1 59 141 199 59 0 0 407 F6RGE1 Uncharacterized protein OS=Ornithorhynchus anatinus GN=TERF2IP PE=4 SV=1
39 : F7DF74_MONDO 0.71 0.96 5 59 120 174 55 0 0 387 F7DF74 Uncharacterized protein OS=Monodelphis domestica GN=TERF2IP PE=4 SV=1
40 : G3VIQ4_SARHA 0.65 0.95 5 59 120 174 55 0 0 395 G3VIQ4 Uncharacterized protein OS=Sarcophilus harrisii GN=TERF2IP PE=4 SV=1
41 : G3VIQ5_SARHA 0.65 0.95 5 59 120 174 55 0 0 383 G3VIQ5 Uncharacterized protein OS=Sarcophilus harrisii GN=TERF2IP PE=4 SV=1
42 : H3AZ33_LATCH 0.59 0.83 1 59 133 191 59 0 0 416 H3AZ33 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
43 : H3AZ34_LATCH 0.59 0.83 1 59 121 179 59 0 0 455 H3AZ34 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
44 : TE2IP_XENLA 0.54 0.81 1 59 185 243 59 0 0 513 Q71M44 Telomeric repeat-binding factor 2-interacting protein 1 OS=Xenopus laevis GN=terf2ip PE=2 SV=1
45 : A7RVV1_NEMVE 0.52 0.67 1 58 130 187 58 0 0 649 A7RVV1 Predicted protein OS=Nematostella vectensis GN=v1g241050 PE=4 SV=1
46 : TE2IP_CHICK 0.48 0.76 1 58 98 154 58 1 1 329 Q7T0L4 Telomeric repeat-binding factor 2-interacting protein 1 OS=Gallus gallus GN=TERF2IP PE=1 SV=1
47 : B3RX95_TRIAD 0.47 0.70 1 57 105 161 57 0 0 582 B3RX95 Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_56129 PE=4 SV=1
48 : W5N779_LEPOC 0.45 0.74 1 53 125 174 53 1 3 384 W5N779 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus GN=TERF2IP PE=4 SV=1
49 : B1H363_XENTR 0.44 0.69 1 59 25 81 59 1 2 349 B1H363 Rap1 protein OS=Xenopus tropicalis GN=rap1 PE=2 SV=1
50 : H2URR6_TAKRU 0.43 0.64 1 53 125 174 53 1 3 382 H2URR6 Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
51 : C3XWF6_BRAFL 0.41 0.69 1 59 64 122 59 0 0 1410 C3XWF6 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_63636 PE=4 SV=1
52 : V2WW71_MONRO 0.39 0.62 5 56 11 66 56 1 4 1162 V2WW71 Uncharacterized protein OS=Moniliophthora roreri (strain MCA 2997) GN=Moror_6199 PE=4 SV=1
53 : Q5BC24_EMENI 0.38 0.55 2 59 76 133 58 0 0 403 Q5BC24 Transcription factor Rap1, putative (AFU_orthologue AFUA_6G07560) OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN1906.2 PE=4 SV=1
54 : N1Q1Y0_MYCP1 0.37 0.56 1 57 117 172 57 1 1 407 N1Q1Y0 Uncharacterized protein (Fragment) OS=Mycosphaerella pini (strain NZE10 / CBS 128990) GN=DOTSEDRAFT_143910 PE=4 SV=1
55 : T1F327_HELRO 0.37 0.65 1 57 30 85 57 1 1 183 T1F327 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_170441 PE=4 SV=1
56 : R1GY91_BOTPV 0.36 0.66 1 58 113 169 58 1 1 314 R1GY91 Putative transcription factor protein OS=Botryosphaeria parva (strain UCR-NP2) GN=UCRNP2_2196 PE=4 SV=1
57 : V9DQ78_9EURO 0.36 0.54 1 56 118 172 56 1 1 1093 V9DQ78 Uncharacterized protein OS=Cladophialophora carrionii CBS 160.54 GN=G647_00561 PE=4 SV=1
## ALIGNMENTS 1 - 57
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 132 51 21 GGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGG GGG GGGGGGGGGN TSSG
2 2 A R - 0 0 149 53 3 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RRR RRRRRRRRRR RRRKR
3 3 A I - 0 0 107 54 77 IIIIIIIIIIIIIIVVIVIIIIIVIIVIVVVLLMMTMI VVNALLMNLQ ATNHT
4 4 A A - 0 0 68 54 67 AAAAAAAAAAAAAAAAAAAAAAAAAGASAAATAVGVVP AAPKPFGVSK APKPP
5 5 A F - 0 0 49 58 2 FFFFFFFFFFFFFFYYFFFFYYYYFFFFFFFYFFFFFFFYYYYFYFYYFYFFFFFFF
6 6 A T > - 0 0 77 58 15 TTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTSTTTTTTTTTTTTTTTTTLTTTSTT
7 7 A D H > S+ 0 0 136 58 68 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDEDDEEERREYETNEARDIVSHP
8 8 A A H > S+ 0 0 61 58 48 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAEEAASKESEEQSQA
9 9 A D H > S+ 0 0 13 58 20 DDDDDDDDDDDDDDDDDDDDEEDDDDDDDDDDDDDDDEEEEEEEEEEEEEEEEDEDD
10 10 A D H X S+ 0 0 65 58 5 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDQEDDDDD
11 11 A V H X S+ 0 0 91 58 61 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVTLAAVVVQAAAVAIKQRVVQ
12 12 A A H X S+ 0 0 18 58 37 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANLLDAEF
13 13 A I H X S+ 0 0 10 58 14 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILIIIIILILILL
14 14 A L H X S+ 0 0 81 58 29 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLILVVVLLLLLLLLLLIYWLYW
15 15 A T H X S+ 0 0 73 58 81 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTITTRRRMMVDREQLSKEDENNN
16 16 A Y H X>S+ 0 0 57 58 10 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYAYYYYYYYFYWW
17 17 A V H <5S+ 0 0 1 58 16 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLLVVVILVVVIMVVVL
18 18 A K H <5S+ 0 0 128 57 52 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRKRES.SAAQELKK
19 19 A E H <5S+ 0 0 144 57 45 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDDQENR.KEKHEKDP
20 20 A N T <5S+ 0 0 71 58 66 NNNNNNNNNNNNNNNNNNNNNNNNNHHNHHHNNHNNHNNNNHHNYRYHRHHNYADCF
21 21 A A < + 0 0 7 58 59 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAKKAASGKEKSAEKNEV
22 22 A R + 0 0 202 57 71 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRAAPCGS.NMDPRQKAD
23 23 A S S > S- 0 0 59 57 65 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSGGHPAP.ADPSDDYRR
24 24 A P T 4 S+ 0 0 113 56 55 PPPPPPPPPPPPSPPPAPPAPPPPAPTPPPTPTAPPAPPPPQQRGPA.PATTPG.GG
25 25 A S T > S+ 0 0 80 58 76 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSNNTTGIRLGHGRTLAVAG
26 26 A S T 4 S+ 0 0 27 58 50 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAASSTPVPERGPGSSNAS
27 27 A V T < S+ 0 0 34 58 58 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIQLLVVVVSAVGNVRSVAIW
28 28 A T T 4 S+ 0 0 99 58 63 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAKKTGGGKTRGKVKGSK
29 29 A G S < S- 0 0 32 58 18 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGIGGMGGGG
30 30 A N S > S+ 0 0 67 57 39 NNNNNNNNNNNTNTNNTNNTNNNNTNNNNNNNNNNNNTNTTNNINANNV.NNGNNNN
31 31 A A H > S+ 0 0 64 56 63 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAV.ERS.KNNEIEE
32 32 A L H > S+ 0 0 20 57 29 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLVVLLLIIL.ILKLIII
33 33 A W H > S+ 0 0 0 58 14 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWFIYWYY
34 34 A K H X S+ 0 0 84 58 29 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKMMKKKKQKQKKYKQKK
35 35 A A H X S+ 0 0 46 58 60 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGEEEQEKAEEEAQQKDQ
36 36 A M H < S+ 0 0 13 58 12 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLMMMLLLMMMMLMMMMMLLLALL
37 37 A E H < S+ 0 0 96 58 19 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEAEFEEEE
38 38 A K H < S+ 0 0 165 58 53 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRQRCKRQKLnAKERE
39 39 A S S < S+ 0 0 102 57 85 SSSSSSSSSSSSSSSSSSSSSSSSSSSSGGSSSSSNSIAAAIIRETKEKEYpAVLR.
40 40 A S - 0 0 36 57 74 SSSSSSSSSSSSSSSSSSSSSSSSSSAAAAASASAASAAAASSRKGKGQRKWNNK.V
41 41 A L S S+ 0 0 167 58 53 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVLIIVLIHHPINN
42 42 A T S S- 0 0 41 58 38 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTLTTTTVTTKPRTNP
43 43 A Q S S+ 0 0 182 58 68 QQQQQQQQQQQQQEQQQQKQQQQQQQPPQQPQQQQQQQQQQRRKGRCSKSKGGHDRR
44 44 A H - 0 0 34 58 19 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHRRHHRHHHHRHHHHTHHH
45 45 A S - 0 0 47 58 38 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPPPSSTSSSSTSSSTFPST
46 46 A W S > S+ 0 0 38 57 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW.WWF
47 47 A Q H > S+ 0 0 110 58 3 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQ
48 48 A S H > S+ 0 0 11 58 26 SSSSSSSSSSSSSSSSSASSSSSSSSSASSSSASSASSASSSSASASSASASSASSS
49 49 A L H > S+ 0 0 5 58 37 LLLLLLLLLLLLLLLLLLMLLLLLLLLLMMLLLMLLMMMLLMMIMMMMIMMWWWMWW
50 50 A K H X S+ 0 0 43 58 22 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQRKKKKRRRRKRR
51 51 A D H X S+ 0 0 50 58 17 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDCDDDNCDDDDDDD
52 52 A R H X S+ 0 0 37 58 12 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHRRRHRRRRHR
53 53 A Y H X>S+ 0 0 42 58 2 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYW
54 54 A L H <5S+ 0 0 111 56 40 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLMMIRLK F LVLIRII
55 55 A K H <5S- 0 0 138 56 8 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRK R KKKKRKK
56 56 A H H <5S+ 0 0 113 56 57 HHHHHHHHHHHHHHHHHHHHHHHHHRHHHHHHHRRHRHHHHKKHIHK Y HNRKYIH
57 57 A L T <5S+ 0 0 74 54 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL L L LLIL
58 58 A R < 0 0 187 51 21 RRRRRRRRRRRRRRRRRRRRRRQRRRRRRRRRRRRRRKKKKRRKRR K K R R
59 59 A G 0 0 107 48 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG G G G
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 92 0 0 4 2 0 0 0 0 0 0 2 0 51 0 0 0.356 11 0.79
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 2 0 0 0 0 53 0 0 0.094 3 0.96
3 3 A 19 9 46 7 0 0 0 0 4 0 0 6 0 2 0 0 2 0 6 0 54 0 0 1.673 55 0.23
4 4 A 7 0 0 0 2 0 0 6 63 11 4 2 0 0 0 6 0 0 0 0 54 0 0 1.319 44 0.32
5 5 A 0 0 0 0 74 0 26 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.572 19 0.97
6 6 A 0 2 0 0 0 0 0 0 0 0 5 93 0 0 0 0 0 0 0 0 58 0 0 0.290 9 0.84
7 7 A 2 0 2 0 0 0 2 0 2 2 2 2 0 2 5 0 0 12 3 66 58 0 0 1.362 45 0.32
8 8 A 0 0 0 0 0 0 0 0 81 0 5 0 0 0 0 2 3 9 0 0 58 0 0 0.721 24 0.52
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 67 58 0 0 0.632 21 0.79
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 97 58 0 0 0.174 5 0.94
11 11 A 74 3 2 0 0 0 0 0 10 0 0 2 0 0 2 2 5 0 0 0 58 0 0 1.006 33 0.39
12 12 A 0 3 0 0 2 0 0 0 90 0 0 0 0 0 0 0 0 2 2 2 58 0 0 0.494 16 0.62
13 13 A 0 9 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.294 9 0.86
14 14 A 7 83 3 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.689 23 0.70
15 15 A 2 2 2 3 0 0 0 0 0 0 2 66 0 0 7 2 2 5 5 3 58 0 0 1.420 47 0.18
16 16 A 0 0 0 0 2 3 93 0 2 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.323 10 0.89
17 17 A 88 7 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58 1 0 0.484 16 0.84
18 18 A 0 2 0 0 0 0 0 0 4 0 4 0 0 0 7 79 2 4 0 0 57 0 0 0.868 28 0.48
19 19 A 0 0 0 0 0 0 0 0 0 2 0 0 0 2 2 5 2 74 2 12 57 0 0 0.992 33 0.54
20 20 A 0 0 0 0 2 0 5 0 2 0 0 0 2 21 3 0 0 0 64 2 58 0 0 1.162 38 0.33
21 21 A 2 0 0 0 0 0 0 2 76 0 5 0 0 0 0 9 0 5 2 0 58 1 0 0.937 31 0.40
22 22 A 0 0 0 2 0 0 0 2 5 4 2 0 2 0 74 4 2 0 2 4 57 0 0 1.158 38 0.29
23 23 A 0 0 0 0 0 0 2 4 4 5 74 2 0 2 4 0 0 0 0 5 57 1 0 1.100 36 0.34
24 24 A 0 0 0 0 0 0 0 7 13 64 2 9 0 0 2 0 4 0 0 0 56 0 0 1.211 40 0.44
25 25 A 2 3 2 0 0 0 0 7 3 0 67 5 0 2 3 0 0 0 5 0 58 0 0 1.316 43 0.23
26 26 A 2 0 0 0 0 0 0 3 5 5 78 2 0 0 2 0 0 2 2 0 58 0 0 0.969 32 0.49
27 27 A 78 3 3 0 0 2 0 2 3 0 3 0 0 0 2 0 2 0 2 0 58 0 0 1.011 33 0.41
28 28 A 2 0 0 0 0 0 0 9 3 0 2 72 0 0 2 10 0 0 0 0 58 0 0 1.006 33 0.36
29 29 A 0 0 2 2 0 0 0 95 0 0 0 2 0 0 0 0 0 0 0 0 58 1 0 0.260 8 0.81
30 30 A 2 0 2 0 0 0 0 2 2 0 0 14 0 0 0 0 0 0 79 0 57 1 0 0.746 24 0.61
31 31 A 2 0 2 0 0 0 0 0 77 0 2 4 0 0 2 2 0 7 4 0 56 0 0 0.989 33 0.37
32 32 A 4 82 12 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 57 0 0 0.605 20 0.71
33 33 A 0 0 2 0 2 91 5 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.376 12 0.85
34 34 A 0 0 0 3 0 0 2 0 0 0 0 0 0 0 0 90 5 0 0 0 58 0 0 0.437 14 0.70
35 35 A 0 0 0 0 0 0 0 3 72 0 0 0 0 0 0 3 7 12 0 2 58 0 0 0.976 32 0.39
36 36 A 0 17 0 81 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.543 18 0.87
37 37 A 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 95 0 0 58 0 0 0.236 7 0.81
38 38 A 0 2 0 0 0 0 0 0 2 0 0 0 2 0 9 78 3 3 2 0 58 1 1 0.920 30 0.47
39 39 A 2 2 5 0 0 0 2 4 7 2 61 2 0 0 4 4 0 5 2 0 57 1 0 1.574 52 0.15
40 40 A 2 0 0 0 0 2 0 4 21 0 56 0 0 0 4 7 2 0 4 0 57 0 0 1.404 46 0.25
41 41 A 5 79 7 0 0 0 0 0 0 2 0 0 0 3 0 0 0 0 3 0 58 0 0 0.824 27 0.46
42 42 A 2 2 0 0 0 0 0 0 0 3 0 88 0 0 2 2 0 0 2 0 58 0 0 0.579 19 0.62
43 43 A 0 0 0 0 0 0 0 5 0 5 3 0 2 2 9 7 64 2 0 2 58 0 0 1.385 46 0.31
44 44 A 0 0 0 0 0 0 0 0 0 0 0 2 0 91 7 0 0 0 0 0 58 0 0 0.337 11 0.80
45 45 A 0 0 0 0 2 0 0 0 0 7 84 7 0 0 0 0 0 0 0 0 58 1 0 0.581 19 0.62
46 46 A 0 0 0 0 2 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.088 2 0.99
47 47 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 98 0 0 0 58 0 0 0.087 2 0.97
48 48 A 0 0 0 0 0 0 0 0 17 0 83 0 0 0 0 0 0 0 0 0 58 0 0 0.460 15 0.73
49 49 A 0 60 3 28 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.987 32 0.63
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 86 2 0 0 0 58 0 0 0.453 15 0.77
51 51 A 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 2 95 58 0 0 0.236 7 0.82
52 52 A 0 0 0 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 0 58 0 0 0.204 6 0.88
53 53 A 0 0 0 0 2 2 97 0 0 0 0 0 0 0 0 0 0 0 0 0 58 0 0 0.174 5 0.98
54 54 A 4 79 7 4 2 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 56 0 0 0.879 29 0.59
55 55 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 56 0 0 0.209 6 0.91
56 56 A 0 0 4 0 0 0 4 0 0 0 0 0 0 75 9 7 0 0 2 0 56 0 0 0.930 31 0.43
57 57 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54 0 0 0.092 3 0.96
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 14 2 0 0 0 51 0 0 0.494 16 0.79
59 59 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 48 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
52 35 45 4 nDEAYp
//