Complet list of 1fct hssp file
Complete list of 1fct.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1FCT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER TRANSIT PEPTIDE 30-MAR-94 1FCT
COMPND MOL_ID: 1; MOLECULE: FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQUENCE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; ORGANISM_TA
AUTHOR J.-M.LANCELIN,M.BLACKLEDGE
DBREF 1FCT A 1 32 UNP P07839 FER_CHLRE 1 32
SEQLENGTH 32
NCHAIN 1 chain(s) in 1FCT data set
NALIGN 6
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A8IV40_CHLRE 1.00 1.00 1 32 1 32 32 0 0 126 A8IV40 Apoferredoxin OS=Chlamydomonas reinhardtii GN=PETF PE=4 SV=1
2 : FER_CHLRE 1FCT 1.00 1.00 1 32 1 32 32 0 0 126 P07839 Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2
3 : Q1WLW8_CHLIN 1.00 1.00 1 32 1 32 32 0 0 126 Q1WLW8 Chloroplast ferredoxin OS=Chlamydomonas incerta GN=PetF PE=2 SV=1
4 : D8U0Z8_VOLCA 0.68 0.96 1 27 1 28 28 1 1 128 D8U0Z8 Apoferredoxin, chloroplast OS=Volvox carteri GN=petF PE=4 SV=1
5 : A1YQX2_VOLCA 0.64 0.96 1 27 1 28 28 1 1 128 A1YQX2 Ferredoxin OS=Volvox carteri f. nagariensis GN=fer1 PE=4 SV=1
6 : D8UJ95_VOLCA 0.64 0.96 1 27 1 28 28 1 1 128 D8UJ95 Ferredoxin OS=Volvox carteri GN=fer1 PE=4 SV=1
## ALIGNMENTS 1 - 6
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M > 0 0 203 7 0 MMMMMM
2 2 A A T >> + 0 0 77 7 52 AAAASS
3 3 A M H 3> S+ 0 0 118 7 0 MMMMMM
4 4 A A H <> S+ 0 0 25 7 26 AAATAA
5 5 A M H <> S+ 0 0 99 7 42 MMMMVV
6 6 A R H X S+ 0 0 129 7 0 RRRRRR
7 7 A S H X S+ 0 0 13 7 0 SSSSSS
8 8 A T H X S+ 0 0 29 7 74 TTTSSS
9 9 A F H X S+ 0 0 148 7 0 FFFFFF
10 10 A A H < S+ 0 0 53 7 0 AAAAAA
11 11 A A H >X S+ 0 0 2 7 0 AAAAAA
12 12 A R H 3< S+ 0 0 115 7 0 RRRRRR
13 13 A V T 3< S+ 0 0 104 7 0 VVVVVV
14 14 A G T <4 S- 0 0 36 7 49 GGGAAA
15 15 A A S >< S+ 0 0 49 7 49 AAAggg
16 16 A K G >>>S+ 0 0 140 7 43 KKKrrr
17 17 A P G 34>S+ 0 0 47 7 0 PPPPPP
18 18 A A G <45S+ 0 0 16 7 0 AAAAAA
19 19 A V T <45S+ 0 0 75 7 0 VVVVVV
20 20 A R T ><5S+ 0 0 147 7 0 RRRRRR
21 21 A G T 3