Complet list of 1fcl hssp file
Complete list of 1fcl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1FCL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER PROTEIN BINDING 18-JUL-00 1FCL
COMPND MOL_ID: 1; MOLECULE: IMMUNOGLOBULIN G BINDING PROTEIN G; CHAIN: A; FRA
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP.; ORGANISM_TAXID: 130
AUTHOR S.A.ROSS,C.A.SARISKY,A.SU,S.L.MAYO
DBREF 1FCL A 1 56 UNP P19909 SPG2_STRSG 302 357
SEQLENGTH 56
NCHAIN 1 chain(s) in 1FCL data set
NALIGN 24
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q54181_STRSG2OED 0.89 0.96 1 56 60 115 56 0 0 185 Q54181 Protein G' OS=Streptococcus sp. group G GN=Protein G'gene PE=1 SV=1
2 : C5WHI8_STRDG 0.82 0.89 1 56 372 427 56 0 0 523 C5WHI8 Immunoglobulin G-binding protein OS=Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) GN=spg PE=3 SV=1
3 : E8QBR8_STRED 0.82 0.89 1 56 297 352 56 0 0 448 E8QBR8 IgG binding protein Zag OS=Streptococcus dysgalactiae subsp. equisimilis (strain ATCC 12394 / D166B) GN=SDE12394_07285 PE=3 SV=1
4 : F5U588_STREQ 0.82 0.89 1 56 88 143 56 0 0 239 F5U588 Putative immunoglobulin G-binding protein G (Fragment) OS=Streptococcus dysgalactiae subsp. equisimilis SK1249 GN=HMPREF9964_0770 PE=4 SV=1
5 : F9NHM5_STREQ 0.82 0.89 1 56 271 326 56 0 0 422 F9NHM5 Immunoglobulin G-binding protein G OS=Streptococcus dysgalactiae subsp. equisimilis SK1250 GN=spg PE=4 SV=1
6 : K4Q980_STREQ 0.82 0.89 1 56 372 427 56 0 0 523 K4Q980 Immunoglobulin G-binding protein G OS=Streptococcus dysgalactiae subsp. equisimilis AC-2713 GN=spg PE=3 SV=1
7 : M4YXE4_STREQ 0.82 0.89 1 56 309 364 56 0 0 460 M4YXE4 Immunoglobulin G-binding protein OS=Streptococcus dysgalactiae subsp. equisimilis RE378 GN=spg PE=3 SV=1
8 : Q53291_FINMA2ZW0 0.82 0.89 1 56 399 454 56 0 0 455 Q53291 Protein LG (Fragment) OS=Finegoldia magna PE=1 SV=1
9 : SPG1_STRSG 2RPV 0.82 0.89 1 56 297 352 56 0 0 448 P06654 Immunoglobulin G-binding protein G OS=Streptococcus sp. group G GN=spg PE=1 SV=1
10 : SPG2_STRSG 1ZXH 0.82 0.89 1 56 442 497 56 0 0 593 P19909 Immunoglobulin G-binding protein G OS=Streptococcus sp. group G GN=spg PE=1 SV=1
11 : U3TN53_STREQ 0.82 0.89 1 56 398 453 56 0 0 532 U3TN53 Immunoglobulin G-binding protein OS=Streptococcus dysgalactiae subsp. equisimilis 167 GN=SDSE167_1496 PE=4 SV=1
12 : E7Q004_STRDY 0.80 0.89 1 56 363 418 56 0 0 519 E7Q004 Ig, alpha2-macroglobulin and albumin binding protein Zag OS=Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 GN=SDD27957_06725 PE=3 SV=1
13 : Q53337_9STRE 0.80 0.89 1 56 2 57 56 0 0 60 Q53337 Protein G IgG Fc binding domain OS=Streptococcus sp. CMCC 32138 GN=PGFB PE=4 SV=1
14 : Q53974_STRDY 0.80 0.89 1 56 257 312 56 0 0 413 Q53974 Mag protein (Precursor) OS=Streptococcus dysgalactiae GN=mag PE=3 SV=1
15 : Q53975_STRDY 0.80 0.89 1 56 503 558 56 0 0 664 Q53975 Streptococcal surface protein (Precursor) OS=Streptococcus dysgalactiae GN=mig PE=3 SV=1
16 : Q93EM8_STRDY 0.79 0.88 1 56 503 558 56 0 0 669 Q93EM8 Mig (Precursor) OS=Streptococcus dysgalactiae PE=3 SV=1
17 : B4U242_STREM 0.68 0.86 1 56 315 370 56 0 0 445 B4U242 IgG binding protein Zag OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=zag PE=3 SV=1
18 : Q76K19_STRSZ 0.68 0.86 1 56 303 358 56 0 0 433 Q76K19 Cell surface protein OS=Streptococcus equi subsp. zooepidemicus GN=zag PE=3 SV=2
19 : T0I4N1_STRSZ 0.68 0.86 1 56 303 358 56 0 0 433 T0I4N1 IgG binding protein Zag OS=Streptococcus equi subsp. zooepidemicus S31A1 GN=zag PE=3 SV=1
20 : C0MA37_STRE4 0.66 0.86 1 56 299 354 56 0 0 429 C0MA37 Ig, alpha2-macroglobulin and albumin binding protein Eag OS=Streptococcus equi subsp. equi (strain 4047) GN=SEQ_0721 PE=3 SV=1
21 : C0MCK9_STRS7 0.66 0.86 1 56 299 354 56 0 0 429 C0MCK9 Ig, alpha2-macroglobulin and albumin binding protein Zag (Precursor) OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=SZO_13070 PE=3 SV=1
22 : F8INR7_STREC 0.66 0.86 1 56 299 354 56 0 0 429 F8INR7 Cell surface protein OS=Streptococcus equi subsp. zooepidemicus (strain ATCC 35246 / C74-63) GN=SeseC_00850 PE=3 SV=1
23 : Q56212_STRSZ 0.66 0.86 1 56 299 354 56 0 0 429 Q56212 Cell surface protein (Precursor) OS=Streptococcus equi subsp. zooepidemicus PE=3 SV=1
24 : K9E8M0_9LACT 0.48 0.68 14 56 458 501 44 1 1 598 K9E8M0 YSIRK family Gram-positive signal peptide (Fragment) OS=Alloiococcus otitis ATCC 51267 GN=HMPREF9698_01324 PE=4 SV=1
## ALIGNMENTS 1 - 24
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A T 0 0 132 24 0 TTTTTTTTTTTTTTTTTTTTTTT
2 2 A T - 0 0 63 24 0 TTTTTTTTTTTTTTTTTTTTTTT
3 3 A F E -A 18 0A 13 24 0 YYYYYYYYYYYYYYYYYYYYYYY
4 4 A K E -A 17 0A 63 24 38 KKKKKKKKKKKKKKKKRRRRRRR
5 5 A L E -A 16 0A 0 24 0 LLLLLLLLLLLLLLLLLLLLLLL
6 6 A I E -Ab 15 53A 52 24 3 VVVVVVVVVVVVVVVVVVVVVVV
7 7 A I E -Ab 14 54A 4 24 0 IIIIIIIIIIIIIIIIIIIIIII
8 8 A N E +Ab 13 55A 51 24 61 NNNNNNNNNNNNNNNNKKKKKKK
9 9 A G - 0 0 2 24 0 GGGGGGGGGGGGGGGGGGGGGGG
10 10 A K S S+ 0 0 157 24 93 KKKKKKKKKKKKKKKKVVVVVAV
11 11 A T S S+ 0 0 129 24 0 TTTTTTTTTTTTTTTTTTTTTTT
12 12 A L + 0 0 64 24 16 LLLLLLLLLLLLLLLLFFFFFFF
13 13 A K E +A 8 0A 148 24 72 KKKKKKKKKKKKKKKKSSSSSSS
14 14 A G E -A 7 0A 40 25 0 GGGGGGGGGGGGGGGGGGGGGGGG
15 15 A E E -A 6 0A 101 25 18 EEEEEEEEEEEEEEEEEEEEEEEA
16 16 A T E -A 5 0A 28 25 0 TTTTTTTTTTTTTTTTTTTTTTTT
17 17 A T E -A 4 0A 67 25 53 TTTTTTTTTTTTTTTTAAAASAAT
18 18 A T E -A 3 0A 36 25 19 TTTTTTTTTTTTTTTTTTTTTTTV
19 19 A E + 0 0 157 25 14 EKKKKKKKKKKKKKKKKKKKKKKK
20 20 A A S S- 0 0 38 25 4 AAAAAAAAAAAATAAAAAAAAAAA
21 21 A V S S- 0 0 109 25 24 VVVVVVVVVVVVVVVVVVVVVVVS
22 22 A D S > S- 0 0 96 25 19 DDDDDDDDDDDDDDDDDDDDDDDS
23 23 A A H > S+ 0 0 12 25 5 AAAAAAAAAAAAAAAVAAAAAAAA
24 24 A A H > S+ 0 0 62 25 58 AEEEEEEEEEEEEEEEAAAAAAAE
25 25 A T H > S+ 0 0 58 25 24 TTTTTTTTTTTTTTTTTTTTTTTQ
26 26 A A H >X S+ 0 0 1 25 0 AAAAAAAAAAAAAAAAAAAAAAAA
27 27 A E H 3X S+ 0 0 55 25 0 EEEEEEEEEEEEEEEEEEEEEEEE
28 28 A K H 3X S+ 0 0 128 25 52 KKKKKKKKKKKKKKKKQQQQQQQK
29 29 A V H X S+ 0 0 106 25 1 YYYYYYYYYYYYYYYYYYYYYYYF
34 34 A I H 3X>S+ 0 0 1 25 29 AAAAAAAAAAAAAAAAAAAAAAAV
35 35 A N H 3<5S+ 0 0 117 25 0 NNNNNNNNNNNNNNNNNNNNNNNN
36 36 A D H <<5S+ 0 0 130 25 13 DDDDDDDDDDDEDEEEDDDDDDDE
37 37 A N H <5S- 0 0 42 25 0 NNNNNNNNNNNNNNNNNNNNNNNN
38 38 A G T <5 + 0 0 50 25 0 GGGGGGGGGGGGGGGGGGGGGGGG
39 39 A I < + 0 0 7 25 20 VVVVVVVVVVVVVVVVIIIVVVVL
40 40 A D + 0 0 92 25 69 DDDDDDDDDDDDDDDDTTTTTTTg
41 41 A G S S- 0 0 38 25 30 GGGGGGGGGGGGGGGGGGGGGGGl
42 42 A E B -C 55 0A 155 25 88 EVVVVVVVVVVVVVVVEEEEEEEE
43 43 A W - 0 0 51 25 0 WWWWWWWWWWWWWWWWWWWWWWWW
44 44 A T - 0 0 69 25 65 TTTTTTTTTTTTTTTTAAAAAAAS
45 45 A Y - 0 0 98 25 0 YYYYYYYYYYYYYYYYYYYYYYYY
46 46 A D B >> -D 51 0B 60 25 0 DDDDDDDDDDDDDDDDDDDDDDDD
47 47 A D T 45S+ 0 0 147 25 65 DDDDDDDDDDDDDDDDTTTAAAAE
48 48 A A T 45S- 0 0 92 25 18 AAAAAAAAAAAAAAAAAAAAAAAD
49 49 A T T 45S- 0 0 79 25 0 TTTTTTTTTTTTTTTTTTTTTTTT
50 50 A K T <5S+ 0 0 82 25 0 KKKKKKKKKKKKKKKKKKKKKKKK
51 51 A T B < -D 46 0B 14 25 0 TTTTTTTTTTTTTTTTTTTTTTTT
52 52 A W - 0 0 33 25 1 FFFFFFFFFFFFFFFFFFFFFFFF
53 53 A T E -b 6 0A 22 25 0 TTTTTTTTTTTTTTTTTTTTTTTT
54 54 A V E -b 7 0A 0 25 19 VVVVVVVVVVVVVVVVVVVVVVVA
55 55 A T E bC 8 42A 64 25 19 TTTTTTTTTTTTTTTTTTTTTTTI
56 56 A E 0 0 104 25 0 EEEEEEEEEEEEEEEEEEEEEEEE
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
3 3 A 0 0 0 0 4 0 96 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.173 5 0.99
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 71 0 0 0 0 24 0 0 0.604 20 0.61
5 5 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
6 6 A 96 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.173 5 0.96
7 7 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 0 0 71 0 24 0 0 0.604 20 0.39
9 9 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
10 10 A 25 0 0 0 0 0 0 0 4 0 0 0 0 0 0 71 0 0 0 0 24 0 0 0.723 24 0.06
11 11 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 24 0 0 0.000 0 1.00
12 12 A 0 71 0 0 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.604 20 0.83
13 13 A 0 0 0 0 0 0 0 0 0 0 29 0 0 0 0 71 0 0 0 0 24 0 0 0.604 20 0.28
14 14 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 96 0 0 25 0 0 0.168 5 0.82
16 16 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 24 0 4 72 0 0 0 0 0 0 0 0 25 0 0 0.708 23 0.46
18 18 A 4 0 0 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.80
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92 0 8 0 0 25 0 0 0.279 9 0.85
20 20 A 0 0 0 0 0 0 0 0 96 0 0 4 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.95
21 21 A 96 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.76
22 22 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 96 25 0 0 0.168 5 0.80
23 23 A 4 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.94
24 24 A 0 0 0 0 0 0 0 0 36 0 0 0 0 0 0 0 0 64 0 0 25 0 0 0.653 21 0.41
25 25 A 0 0 0 0 0 0 0 0 0 0 0 96 0 0 0 0 4 0 0 0 25 0 0 0.168 5 0.76
26 26 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 25 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 28 0 0 0 25 0 0 0.593 19 0.47
29 29 A 8 0 0 0 0 0 4 0 68 0 0 20 0 0 0 0 0 0 0 0 25 0 0 0.915 30 0.27
30 30 A 0 4 0 0 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.98
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 72 0 0 0 0 25 0 0 0.593 19 0.67
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 0 4 0 25 0 0 0.168 5 0.83
33 33 A 0 0 0 0 4 0 96 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.98
34 34 A 4 0 4 0 0 0 0 0 92 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.334 11 0.70
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 25 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 80 25 0 0 0.500 16 0.87
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 25 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
39 39 A 80 4 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.600 20 0.79
40 40 A 0 0 0 0 0 0 0 4 0 0 0 28 0 0 0 0 0 0 0 68 25 0 1 0.747 24 0.31
41 41 A 0 4 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.69
42 42 A 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 25 0 0 0.673 22 0.12
43 43 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 0 28 0 4 68 0 0 0 0 0 0 0 0 25 0 0 0.747 24 0.35
45 45 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 25 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 0 0 16 0 0 12 0 0 0 0 0 4 0 68 25 0 0 0.939 31 0.34
48 48 A 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 0 4 25 0 0 0.168 5 0.82
49 49 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 25 0 0 0.000 0 1.00
51 51 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
52 52 A 0 0 0 0 96 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.98
53 53 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
54 54 A 96 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.80
55 55 A 0 0 4 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 25 0 0 0.168 5 0.80
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 25 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
24 28 485 1 gDl
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