Complet list of 1eyo hssp file
Complete list of 1eyo.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1EYO
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-29
HEADER TOXIN 07-MAY-00 1EYO
COMPND MOL_ID: 1; MOLECULE: CONOTOXIN TVIIA; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY
AUTHOR J.M.HILL,P.F.ALEWOOD,D.J.CRAIK
DBREF 1EYO A 1 30 UNP P58923 CX7A_CONTU 1 30
SEQLENGTH 30
NCHAIN 1 chain(s) in 1EYO data set
NALIGN 2
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : C7A_CONTU 1EYO 0.93 0.93 1 30 1 30 30 0 0 30 P58923 Conotoxin TVIIA OS=Conus tulipa PE=1 SV=1
2 : CGS_CONGE 1AG7 0.52 0.70 1 30 1 33 33 1 3 34 P15472 Mu-conotoxin GS OS=Conus geographus PE=1 SV=1
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 179 3 67 SA
2 2 A a - 0 0 68 3 0 CC
3 3 A S B -a 13 0A 13 3 0 SS
4 4 A G > - 0 0 24 3 0 GG
5 5 A R T 3 S+ 0 0 199 3 0 RR
6 6 A D T 3 S+ 0 0 95 3 49 DG
7 7 A S S < S- 0 0 45 3 0 SS
8 8 A R S S- 0 0 187 3 0 RR
9 9 A b + 0 0 18 3 0 CC
10 10 A X S S+ 0 0 89 2 0 PP
11 11 A X S S+ 0 0 158 2 0 PP
12 12 A V S S+ 0 0 50 3 104 VQ
13 13 A c B S-a 3 0A 21 3 0 CC
14 14 A a > - 0 0 26 3 0 CC
15 15 A M T 3 S+ 0 0 181 3 0 MM
16 16 A G T 3 S+ 0 0 8 3 0 GG
17 17 A L B < +B 26 0B 25 3 0 LL
18 18 A M - 0 0 64 3 80 MR
19 19 A b - 0 0 12 3 0 CC
20 20 A S S S- 0 0 38 3 55 SG
21 21 A R S S- 0 0 255 3 0 RR
22 22 A G S S+ 0 0 31 3 0 Gg
23 23 A K S S- 0 0 110 3 0 Kk
24 24 A c + 0 0 2 3 0 CC
25 25 A V - 0 0 40 3 24 VI
26 26 A S B > -B 17 0B 44 3 55 SG
27 27 A I T 4 S+ 0 0 74 3 92 IA
28 28 A Y T 4 S+ 0 0 160 3 73 YH
29 29 A G T 4 0 0 74 3 61 GE
30 30 A E < 0 0 119 3 30 ED
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 33 0 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.32
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 67 3 0 0 0.637 21 0.51
7 7 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
12 12 A 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 3 0 0 0.637 21 -0.05
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
15 15 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
17 17 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
18 18 A 0 0 0 67 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 3 0 0 0.637 21 0.20
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 33 0 0 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.45
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
25 25 A 67 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.75
26 26 A 0 0 0 0 0 0 0 33 0 0 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.45
27 27 A 0 0 67 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.08
28 28 A 0 0 0 0 0 0 67 0 0 0 0 0 0 33 0 0 0 0 0 0 3 0 0 0.637 21 0.26
29 29 A 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 33 0 0 3 0 0 0.637 21 0.38
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 3 0 0 0.637 21 0.69
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
2 23 23 3 gNPQk
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