Complet list of 1ery hssp file
Complete list of 1ery.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ERY
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-28
HEADER PHEROMONE 22-MAR-96 1ERY
COMPND MOL_ID: 1; MOLECULE: PHEROMONE ER-11; CHAIN: A; SYNONYM: EUPLOMONE R11
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: EUPLOTES RAIKOVI; ORGANISM_TAXID: 5938
AUTHOR P.LUGINBUHL,J.WU,O.ZERBE,C.ORTENZI,P.LUPORINI,K.WUTHRICH
DBREF 1ERY A 1 39 UNP P26887 MER11_EUPRA 1 39
SEQLENGTH 38
NCHAIN 1 chain(s) in 1ERY data set
NALIGN 2
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : MER11_EUPRA 1ERY 1.00 1.00 1 38 1 38 38 0 0 39 P26887 Mating pheromone Er-11 OS=Euplotes raikovi GN=MAT11 PE=1 SV=1
2 : MER20_EUPRA 0.55 0.74 1 38 1 36 38 1 2 37 P26888 Mating pheromone Er-20 (Fragment) OS=Euplotes raikovi GN=MAT20 PE=1 SV=1
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D > 0 0 166 3 0 DD
2 2 A E H > + 0 0 106 3 113 EI
3 3 A a H > S+ 0 0 23 3 0 CC
4 4 A A H > S+ 0 0 59 3 79 AD
5 5 A N H X S+ 0 0 69 3 53 ND
6 6 A A H <>S+ 0 0 1 3 0 AA
7 7 A A H ><5S+ 0 0 22 3 86 AV
8 8 A A H 3<5S+ 0 0 87 3 0 AA
9 9 A Q T 3<5S- 0 0 91 3 0 QQ
10 10 A b T < 5 + 0 0 24 3 0 CC
11 11 A S >< - 0 0 0 3 0 SS
12 12 A I H > S+ 0 0 14 3 59 IM
13 13 A T H 4 S+ 0 0 91 3 0 TT
14 14 A L H > S+ 0 0 49 3 0 LL
15 15 A c H >X S+ 0 0 0 3 0 CC
16 16 A N H 3< S+ 0 0 88 3 73 NQ
17 17 A L H 34 S- 0 0 100 3 0 LL
18 18 A Y H << S+ 0 0 158 3 33 YC
19 19 A a >< + 0 0 0 3 33 CY
20 20 A G G > S+ 0 0 40 2 0 G.
21 21 A P G > S+ 0 0 114 2 0 P.
22 22 A L G <> S+ 0 0 97 3 126 LN
23 23 A I H <> S+ 0 0 47 3 86 IT
24 24 A E H <> S+ 0 0 108 3 0 EE
25 25 A I H > S+ 0 0 100 3 0 II
26 26 A c H X S+ 0 0 4 3 0 CC
27 27 A E H X S+ 0 0 90 3 0 EE
28 28 A L H X S+ 0 0 78 3 0 LL
29 29 A T H X S+ 0 0 41 3 79 TS
30 30 A V H X S+ 0 0 0 3 0 VV
31 31 A M H < S+ 0 0 140 3 59 MI
32 32 A Q H < S+ 0 0 151 3 86 QG
33 33 A N H < S+ 0 0 99 3 79 NS
34 34 A b S < S- 0 0 49 3 0 CC
35 35 A E - 0 0 183 3 53 EQ
36 36 A P S S+ 0 0 28 3 0 PP
37 37 A P 0 0 112 3 0 PP
38 38 A F 0 0 137 3 0 FF
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3 0 0 0.000 0 1.00
2 2 A 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 3 0 0 0.637 21 -0.13
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 0 33 3 0 0 0.637 21 0.20
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 33 3 0 0 0.637 21 0.47
6 6 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
7 7 A 33 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.13
8 8 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 3 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
12 12 A 0 0 67 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.40
13 13 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
14 14 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 67 0 3 0 0 0.637 21 0.27
17 17 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 67 0 0 0 0 0 33 0 0 0 0 0 0 0 3 0 0 0.637 21 0.67
19 19 A 0 0 0 0 0 0 33 0 0 0 0 0 67 0 0 0 0 0 0 0 3 1 0 0.637 21 0.67
20 20 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
22 22 A 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 3 0 0 0.637 21 -0.27
23 23 A 0 0 67 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.13
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00
25 25 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00
28 28 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.20
30 30 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
31 31 A 0 0 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.40
32 32 A 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 67 0 0 0 3 0 0 0.637 21 0.13
33 33 A 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 67 0 3 0 0 0.637 21 0.20
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 0 0 3 0 0 0.637 21 0.47
36 36 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
38 38 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//