Complet list of 1eoq hssp fileClick here to see the 3D structure Complete list of 1eoq.hssp file
HSSP       HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID      1EOQ
THRESHOLD  according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE  Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT    Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman 
DATE       file generated on 2014-04-28
HEADER     VIRAL PROTEIN                           23-MAR-00   1EOQ
COMPND     MOL_ID: 1; MOLECULE: GAG POLYPROTEIN CAPSID PROTEIN P27; CHAIN: A; FRA
SOURCE     MOL_ID: 1; ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS - PRAGUE C; ORGANIS
AUTHOR     R.L.KINGSTON,T.FITZON-OSTENDORP,E.Z.EISENMESSER,G.W.SCHATZ, V.M.VOGT,C
DBREF      1EOQ A  155   249  UNP    P03322   GAG_RSVP       394    488
SEQLENGTH    77
NCHAIN        1 chain(s) in 1EOQ data set
NALIGN      132
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM):  (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e.  entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight

## PROTEINS : identifier and alignment statistics
  NR.    ID         STRID   %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM     PROTEIN
    1 : GAG_RSVP            1.00  1.00    2   77  394  469   76    0    0  701  P03322     Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C) GN=gag-pro PE=1 SV=1
    2 : POL_RSVP            1.00  1.00    2   77  394  469   76    0    0 1603  P03354     Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C) GN=gag-pro-pol PE=1 SV=2
    3 : Q77YH0_9RETR        1.00  1.00    2   77  394  469   76    0    0  701  Q77YH0     Pr76 polyprotein OS=Rous sarcoma virus GN=gag PE=1 SV=1
    4 : Q03858_9RETR        0.99  1.00    2   77  394  469   76    0    0  701  Q03858     Duck adapted Rous sarcoma virus genes for gag, pol, (p19, p10, p27, p12, and p15 proteins) and 5' LTR OS=Rous sarcoma virus GN=gag PE=4 SV=1
    5 : A2SXN8_ALV          0.97  0.99    2   77  397  472   76    0    0  704  A2SXN8     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
    6 : B6EA48_ALV          0.97  0.99    2   77  394  469   76    0    0  701  B6EA48     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
    7 : D9ZFH2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  D9ZFH2     Gag protein OS=Avian leukosis virus PE=4 SV=1
    8 : E2G6M0_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E2G6M0     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
    9 : E2G6M3_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E2G6M3     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   10 : E2G6M6_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E2G6M6     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   11 : E2G6M9_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E2G6M9     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   12 : E2G6N2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E2G6N2     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   13 : E3ULB8_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3ULB8     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   14 : E3ULC1_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3ULC1     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   15 : E3ULC4_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3ULC4     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   16 : E3ULC7_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3ULC7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   17 : E3UTP1_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3UTP1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   18 : E3VNS2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3VNS2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   19 : E3VNS5_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E3VNS5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   20 : E9N628_ALV          0.97  0.99    2   77  394  469   76    0    0  701  E9N628     Gag polyprotein OS=Avian leukemia virus GN=gag PE=4 SV=1
   21 : F6K7I5_ALV          0.97  0.99    2   77  394  469   76    0    0  701  F6K7I5     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   22 : G1D8W0_ALV          0.97  0.99    2   77  393  468   76    0    0  700  G1D8W0     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   23 : G1UCY2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G1UCY2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   24 : G1UH63_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G1UH63     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   25 : G1UH66_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G1UH66     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   26 : G1UH69_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G1UH69     Gag OS=Avian leukosis virus GN=gag PE=4 SV=1
   27 : G4Y2E1_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G4Y2E1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   28 : G4Y2E4_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G4Y2E4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   29 : G4Y2E7_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G4Y2E7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   30 : G4Y2F2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G4Y2F2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   31 : G4Y2F5_ALV          0.97  0.99    2   77  394  469   76    0    0  701  G4Y2F5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   32 : H7CE82_ALV          0.97  0.99    2   77  394  469   76    0    0  701  H7CE82     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   33 : H7CEA1_ALV          0.97  0.99    2   77  394  469   76    0    0  701  H7CEA1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   34 : H7CEA4_ALV          0.97  0.99    2   77  394  469   76    0    0  701  H7CEA4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   35 : I0DHJ8_ALV          0.97  0.99    2   77  394  469   76    0    0  701  I0DHJ8     Gag polyprotein OS=Avian leukemia virus GN=gag PE=4 SV=1
   36 : J7LCP7_ALV          0.97  0.99    2   77  394  469   76    0    0  701  J7LCP7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   37 : K0A2K3_ALV          0.97  0.99    2   77  394  469   76    0    0  701  K0A2K3     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   38 : K9NUI4_ALV          0.97  0.99    2   77  394  469   76    0    0  701  K9NUI4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   39 : M1JS96_ALV          0.97  0.99    2   77  394  469   76    0    0  701  M1JS96     Gag protein (Precursor) OS=Avian leukosis virus GN=gag PE=4 SV=1
   40 : M1JT70_ALV          0.97  0.99    2   77  394  469   76    0    0  701  M1JT70     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   41 : Q64996_ALV          0.97  0.99    2   77  394  469   76    0    0  701  Q64996     Gag proteins OS=Avian leukosis virus HPRS103 PE=4 SV=1
   42 : Q6V5L6_ALV          0.97  0.99    2   77  394  469   76    0    0  701  Q6V5L6     Gag protein OS=Avian leukosis virus LR-9 PE=4 SV=1
   43 : Q6V5L7_ALV          0.97  0.99    2   77  394  469   76    0    0 1603  Q6V5L7     Gag/pol polyprotein OS=Avian leukosis virus LR-9 PE=3 SV=1
   44 : Q85632_AVIMH        0.97  0.99    2   77    6   81   76    0    0  506  Q85632     Gag protein (Fragment) OS=Avian retrovirus MH2 PE=4 SV=2
   45 : Q86288_9RETR        0.97  0.97    2   77  394  469   76    0    0  648  Q86288     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   46 : R9VYY1_ALV          0.97  0.99    2   77  394  469   76    0    0  701  R9VYY1     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   47 : V9VHI5_ALV          0.97  0.99    2   77  394  469   76    0    0  701  V9VHI5     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   48 : W0NI90_ALV          0.97  0.99    2   77  394  469   76    0    0  701  W0NI90     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   49 : W0NLJ2_ALV          0.97  0.99    2   77  394  469   76    0    0  701  W0NLJ2     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   50 : W6A282_ALV          0.97  0.99    2   77  394  469   76    0    0  701  W6A282     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   51 : A4LA60_ALV          0.96  0.99    2   77  394  469   76    0    0  701  A4LA60     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   52 : B3TFE1_ALV          0.96  0.99    2   77  394  469   76    0    0  701  B3TFE1     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   53 : B3TFE4_ALV          0.96  0.99    2   77  394  469   76    0    0  701  B3TFE4     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   54 : B3TFE7_ALV          0.96  0.99    2   77  394  469   76    0    0  701  B3TFE7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   55 : B5LYL9_ALV          0.96  0.99    2   77  156  231   76    0    0  264  B5LYL9     Gag protein (Fragment) OS=Avian leukosis virus GN=gag PE=4 SV=1
   56 : E2J410_ALV          0.96  0.99    2   77  394  469   76    0    0  701  E2J410     Gag protein OS=Avian leukosis virus PE=4 SV=1
   57 : E3UTP4_ALV          0.96  0.99    2   77  394  469   76    0    0  701  E3UTP4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   58 : G0Z7Q1_ALV          0.96  0.99    2   77  394  469   76    0    0  701  G0Z7Q1     Gag protein OS=Avian leukosis virus PE=4 SV=1
   59 : G4XUT9_ALV          0.96  0.99    2   77  156  231   76    0    0  247  G4XUT9     Gag protein OS=Avian leukosis virus PE=4 SV=1
   60 : G4XVS6_ALV          0.96  0.99    2   70  110  178   69    0    0  178  G4XVS6     Core nucleocapsid protein p27 (Fragment) OS=Avian leukosis virus GN=gag PE=4 SV=1
   61 : G4Y2E9_ALV          0.96  0.99    2   77  394  469   76    0    0  701  G4Y2E9     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   62 : G9HSQ5_ALV          0.96  0.99    2   77  394  469   76    0    0  701  G9HSQ5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   63 : G9HSQ8_ALV          0.96  0.99    2   77  394  469   76    0    0  701  G9HSQ8     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   64 : G9I971_ALV          0.96  0.97    2   77  394  469   76    0    0  701  G9I971     Gag protein OS=Avian leukosis virus PE=4 SV=1
   65 : G9I974_ALV          0.96  0.97    2   77  394  469   76    0    0  701  G9I974     Gag protein OS=Avian leukosis virus PE=4 SV=1
   66 : G9I977_ALV          0.96  0.97    2   77  394  469   76    0    0  701  G9I977     Gag protein OS=Avian leukosis virus PE=4 SV=1
   67 : GAG_RSVSA           0.96  0.97    2   77  394  469   76    0    0  701  P0C776     Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3 SV=1
   68 : GAG_RSVSB           0.96  0.97    2   77  394  469   76    0    0  701  O92954     Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro PE=1 SV=1
   69 : H7CEC1_ALV          0.96  0.99    2   77  394  469   76    0    0  701  H7CEC1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   70 : H7CEC4_ALV          0.96  0.99    2   77  394  469   76    0    0  701  H7CEC4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   71 : I6TFZ7_ALV          0.96  0.99    2   77  394  469   76    0    0  701  I6TFZ7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   72 : K7S8H7_ALV          0.96  0.97    2   77  394  469   76    0    0  701  K7S8H7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   73 : K7ZL54_ALV          0.96  0.99    2   77  396  471   76    0    0  703  K7ZL54     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   74 : K7ZR31_ALV          0.96  0.99    2   77  394  469   76    0    0  701  K7ZR31     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   75 : POL_RSVSA           0.96  0.97    2   77  394  469   76    0    0 1603  Q04095     Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol PE=3 SV=2
   76 : POL_RSVSB           0.96  0.97    2   77  394  469   76    0    0 1603  O92956     Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
   77 : Q03852_CHICK        0.96  0.99    2   77  394  469   76    0    0  701  Q03852     Gag protein OS=Gallus gallus GN=RAV-0 PE=4 SV=1
   78 : Q03853_CHICK        0.96  0.99    2   77  394  469   76    0    0  701  Q03853     Gag protein OS=Gallus gallus GN=SE21Q1b PE=4 SV=1
   79 : Q64992_RSVSR        0.96  0.99    2   77  392  467   76    0    0  699  Q64992     Gag polyprotein OS=Rous sarcoma virus - Schmidt-Ruppin D GN=gag PE=4 SV=1
   80 : Q76VV4_AVIMA        0.96  0.99    2   77  394  469   76    0    0  701  Q76VV4     Gag OS=Avian myeloblastosis-associated virus 1/2 GN=gag PE=4 SV=1
   81 : Q7SQ99_ALV          0.96  0.99    2   77  394  469   76    0    0  701  Q7SQ99     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   82 : Q83131_AVIMA        0.96  0.99    2   77  394  469   76    0    0  701  Q83131     Gag OS=Avian myeloblastosis-associated virus type 1 GN=gag PE=4 SV=1
   83 : Q86289_9RETR        0.96  0.97    2   77  394  469   76    0    0  648  Q86289     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   84 : Q86290_9RETR        0.96  0.97    2   77  396  471   76    0    0  650  Q86290     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   85 : Q86830_AVIMB        0.96  0.99    2   77  394  469   76    0    0  701  Q86830     Polyprotein I OS=Avian myeloblastosis virus PE=4 SV=1
   86 : Q89810_AVIMA        0.96  0.99    2   77  394  469   76    0    0  701  Q89810     Gag OS=Avian myeloblastosis-associated virus type 2 GN=gag PE=4 SV=1
   87 : Q90LU2_ALV          0.96  0.99    2   77  394  469   76    0    0  701  Q90LU2     Gag proteins OS=Avian leukosis virus GN=env PE=4 SV=1
   88 : Q98WV8_ALV          0.96  0.99    2   77  394  469   76    0    0 1044  Q98WV8     Pr112 gag-pol polyprotein OS=Avian leukosis virus PE=3 SV=1
   89 : Q98WW0_ALV          0.96  0.99    2   77  394  469   76    0    0  701  Q98WW0     Pr76 gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   90 : Q98WW2_ALV          0.96  0.99    2   77  394  469   76    0    0 1504  Q98WW2     Truncated Pr160 gag-pol polyprotein OS=Avian leukosis virus PE=3 SV=1
   91 : R4QXY1_CHICK        0.96  0.99    2   77  394  469   76    0    0 1603  R4QXY1     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
   92 : R4R7H0_CHICK        0.96  0.99    2   77  394  469   76    0    0  701  R4R7H0     Gag polyprotein OS=Gallus gallus PE=4 SV=1
   93 : R4RAM7_CHICK        0.96  0.99    2   77  394  469   76    0    0  701  R4RAM7     Gag polyprotein OS=Gallus gallus PE=4 SV=1
   94 : R4RBA0_CHICK        0.96  0.99    2   77  394  469   76    0    0 1603  R4RBA0     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
   95 : B1Q2X9_ALV          0.95  0.99    2   77  396  471   76    0    0  703  B1Q2X9     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   96 : D9ZFH6_ALV          0.95  0.97    2   77  394  469   76    0    0  701  D9ZFH6     Gag protein OS=Avian leukosis virus PE=4 SV=1
   97 : GAG_AVIMC           0.95  0.98    2   59  394  451   58    0    0  453  P03323     Gag polyprotein OS=Avian myelocytomatosis virus MC29 GN=gag PE=4 SV=1
   98 : GAG_AVIMD           0.95  0.98    2   59  394  451   58    0    0  453  P06444     Gag polyprotein OS=Avian myelocytomatosis virus HBI GN=gag PE=4 SV=1
   99 : H9U3X7_ALV          0.95  0.99    2   77  396  471   76    0    0  703  H9U3X7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
  100 : I2FK94_ALV          0.95  0.99    2   77  396  471   76    0    0  703  I2FK94     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  101 : K7ZL53_ALV          0.95  0.99    2   77  396  471   76    0    0  703  K7ZL53     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  102 : K7ZPD3_ALV          0.95  0.99    2   77  396  471   76    0    0  703  K7ZPD3     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  103 : K7ZR34_ALV          0.95  0.99    2   77  396  471   76    0    0  703  K7ZR34     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  104 : R4QXY5_CHICK        0.95  0.97    2   77  394  469   76    0    0  701  R4QXY5     Gag polyprotein OS=Gallus gallus PE=4 SV=1
  105 : R4R041_CHICK        0.95  0.97    2   77  394  469   76    0    0 1603  R4R041     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
  106 : B5LYM0_ALV          0.93  0.97    2   77  156  231   76    0    0  264  B5LYM0     Gag protein (Fragment) OS=Avian leukosis virus GN=gag PE=4 SV=1
  107 : O56221_9RETR        0.89  0.94    2   63  394  455   62    0    0  875  O56221     P110 OS=Avian myelocytomatosis virus PE=4 SV=1
  108 : Q45TR3_ALV          0.87  0.92    2   77  394  469   76    0    0  701  Q45TR3     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
  109 : G4XPB2_9RETR        0.61  0.84    2   77  383  458   76    0    0 1124  G4XPB2     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  110 : Q6A2B4_9RETR        0.61  0.84    2   77  378  453   76    0    0  680  Q6A2B4     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  111 : Q9PWB8_CHICK        0.61  0.84    2   77  365  440   76    0    0  692  Q9PWB8     Gag/env fusion protein (Fragment) OS=Gallus gallus PE=4 SV=1
  112 : Q9PWB9_CHICK        0.61  0.84    2   77  373  448   76    0    0 1103  Q9PWB9     Gag/env fusion protein OS=Gallus gallus PE=4 SV=1
  113 : Q9QME4_9RETR        0.61  0.84    2   77  365  440   76    0    0 1125  Q9QME4     Gag-env fusion protein OS=Avian endogenous retrovirus EAV-HP GN=gag-env PE=4 SV=1
  114 : R4MNY4_CHICK        0.61  0.84    2   77  377  452   76    0    0 1137  R4MNY4     Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
  115 : R4MXF2_CHICK        0.61  0.84    2   77  382  457   76    0    0 1123  R4MXF2     Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
  116 : Q99I38_9RETR        0.59  0.83    2   77  369  444   76    0    0  671  Q99I38     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  117 : Q83009_9RETR        0.40  0.70    3   65  538  600   63    0    0  724  Q83009     Gag OS=Lymphoproliferative disease virus PE=4 SV=1
  118 : V9P8B8_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8B8     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  119 : V9P8C1_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8C1     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  120 : V9P8C4_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8C4     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  121 : V9P8C5_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8C5     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  122 : V9P8C9_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8C9     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  123 : V9P8N3_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8N3     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  124 : V9P8P4_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8P4     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  125 : V9P8Q9_9RETR        0.40  0.71    3   65  539  601   63    0    0  725  V9P8Q9     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus PE=4 SV=1
  126 : V9P8V6_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8V6     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  127 : V9P8V8_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P8V8     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  128 : V9P8W1_9RETR        0.40  0.75    3   77  242  315   75    1    1  325  V9P8W1     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  129 : V9P970_9RETR        0.40  0.71    3   65  242  304   63    0    0  325  V9P970     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  130 : V9P969_9RETR        0.39  0.72    3   77  242  315   75    1    1  325  V9P969     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
  131 : Q7LZ15_CHICK        0.37  0.52    2   76   87  135   75    1   26  173  Q7LZ15     Polyprotein (Fragments) OS=Gallus gallus PE=4 SV=1
  132 : V9P8N8_9RETR        0.37  0.72    3   77  242  315   75    1    1  325  V9P8N8     Gag polyprotein (Precursor) OS=Lymphoproliferative disease virus GN=gag PE=4 SV=1
## ALIGNMENTS    1 -   70
 SeqNo  PDBNo AA STRUCTURE BP1 BP2  ACC NOCC  VAR  ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
     1  154 A M              0   0  198    1    0                                                                        
     2  155 A D        +     0   0  152  118   21  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEEDEEDDDDDDDDDD
     3  156 A I        +     0   0   34  133   18  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
     4  157 A M        -     0   0  129  133   24  MMMMTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
     5  158 A Q        -     0   0   23  133    0  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
     6  159 A G    >   -     0   0   16  133    0  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
     7  160 A P  T 3  S+     0   0  122  133   81  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
     8  161 A S  T 3  S+     0   0  126  133   60  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
     9  162 A E    <   -     0   0   43  133    0  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    10  163 A S    >>  -     0   0   58  133   60  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    11  164 A F  H 3> S+     0   0   23  133    0  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
    12  165 A V  H 3> S+     0   0   92  133   62  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
    13  166 A D  H <> S+     0   0   78  133   67  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    14  167 A F  H >X S+     0   0    1  133    0  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
    15  168 A A  H 3X S+     0   0   16  133    3  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    16  169 A N  H 3X S+     0   0   86  133   56  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
    17  170 A R  H <>S+     0   0    8  133   25  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
    23  176 A E  H 3<5S+     0   0  112  133    0  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    24  177 A G  T 3<5S+     0   0   71  133   72  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    25  178 A S  T < 5S-     0   0   73  132    0  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    26  179 A D  T   5S+     0   0  166  132   37  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDDDDDD
    27  180 A L      < -     0   0   62  132    0  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    28  181 A P    >>  -     0   0   71  132    0  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    29  182 A P  H >> S+     0   0  105  132   84  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPSSPPPPPPP
    30  183 A S  H 34 S+     0   0  115  132   64  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    31  184 A A  H <> S+     0   0   33  132   23  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    32  185 A R  H  S+     0   0   68  132   46  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    35  188 A V  H  X S+     0   0   42  132    0  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
    36  189 A I  H  X S+     0   0    6  132   37  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    37  190 A I  H  X S+     0   0   18  132   94  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    38  191 A D  H  X S+     0   0   96  132    0  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    39  192 A C  H >X S+     0   0   21  132    0  CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
    40  193 A F  H >X S+     0   0    1  132   62  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
    41  194 A R  H 3< S+     0   0  119  132   69  RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
    42  195 A Q  H << S+     0   0  117  132    0  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    43  196 A K  H << S+     0   0   66  132   51  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    44  197 A S  S  < S-     0   0    9  132   41  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    45  198 A Q     >  -     0   0   58  132   75  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    46  199 A P  H  > S+     0   0   86  132   99  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    47  200 A D  H  > S+     0   0  127  132  104  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    48  201 A I  H >> S+     0   0   29  132   65  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    49  202 A Q  H 3X S+     0   0   49  132    0  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    50  203 A Q  H 3X S+     0   0  125  132   23  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    51  204 A L  H  S-     0   0   51  131    8  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    62  215 A P  H  >>S+     0   0   42  130   48  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    63  216 A G  H  45S+     0   0   48  131   44  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    64  217 A E  H  >5S+     0   0   79  130   71  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    65  218 A I  H  X5S+     0   0    1  130   45  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    66  219 A I  H  X5S+     0   0   61  117    6  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    67  220 A K  H  >   -     0   0   16  133    0  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
     7  160 A P  T 3  S+     0   0  122  133   81  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLLLLLLLLLLLLLLPL
     8  161 A S  T 3  S+     0   0  126  133   60  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTTTTTTGGGGGGGGGGGGGGNG
     9  162 A E    <   -     0   0   43  133    0  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    10  163 A S    >>  -     0   0   58  133   60  SSSSSSSSSPSPSSPPSSSSSSSSSSSSSSSSSSSSSSPPPPPPPPPPPPPPPPPPPPPPSP
    11  164 A F  H 3> S+     0   0   23  133    0  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
    12  165 A V  H 3> S+     0   0   92  133   62  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVQQQQQQQQLLLLLLLLLLLLLLQL
    13  166 A D  H <> S+     0   0   78  133   67  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEEESSSSSSSSSSSSSSSS
    14  167 A F  H >X S+     0   0    1  133    0  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFFFFFFFFFFFFFFFFFFFFFFFFF
    15  168 A A  H 3X S+     0   0   16  133    3  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAAAAAAAAAAAATA
    16  169 A N  H 3X S+     0   0   86  133   56  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDDDDDDDDEEEEEEEEEEEEEEDE
    17  170 A R  H <>S+     0   0    8  133   25  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVFVVVVVVVVYIIIIIIIIIIIIIAI
    23  176 A E  H 3<5S+     0   0  112  133    0  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    24  177 A G  T 3<5S+     0   0   71  133   72  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGKKKKKKKKKKKKKKGK
    25  178 A S  T < 5S-     0   0   73  132    0  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS.S
    26  179 A D  T   5S+     0   0  166  132   37  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDQQQQQQQQQQQQQQ.Q
    27  180 A L      < -     0   0   62  132    0  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL.L
    28  181 A P    >>  -     0   0   71  132    0  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP.P
    29  182 A P  H >> S+     0   0  105  132   84  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLRRRRRRRREEEEEEEEEEEEEE.E
    30  183 A S  H 34 S+     0   0  115  132   64  SSSTSSSSTSTSSSSSSSSSSSSSTSSSTTTTTSSSSSAAAAAAAAAAAAAAAAAAAAAA.A
    31  184 A A  H <> S+     0   0   33  132   23  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVVVVVVVAAAAAAAAAAAAAA.A
    32  185 A R  H  S+     0   0   68  132   46  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAAAAAAAAAAAAAA.A
    35  188 A V  H  X S+     0   0   42  132    0  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV.V
    36  189 A I  H  X S+     0   0    6  132   37  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFF.F
    37  190 A I  H  X S+     0   0   18  132   94  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILLLLLLLLRRRRRRRRRRRRRR.R
    38  191 A D  H  X S+     0   0   96  132    0  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD.D
    39  192 A C  H >X S+     0   0   21  132    0  CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.C
    40  193 A F  H >X S+     0   0    1  132   62  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLVVVVVVVVVVVVVV.V
    41  194 A R  H 3< S+     0   0  119  132   69  RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSYYYYYYYYKKKKKKKKKKKKKK.K
    42  195 A Q  H << S+     0   0  117  132    0  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ.Q
    43  196 A K  H << S+     0   0   66  132   51  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKQQQQQQQQQQQQQQ.Q
    44  197 A S  S  < S-     0   0    9  132   41  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGGGGGGGGGGGGGG.G
    45  198 A Q     >  -     0   0   58  132   75  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSSSSSSSNNNNNNNNNNNNNN.N
    46  199 A P  H  > S+     0   0   86  132   99  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPEEEEEEEEMMMMMMMMMMMMMM.M
    47  200 A D  H  > S+     0   0  127  132  104  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGGGGGGGGLLLLLLLLLLLLLL.L
    48  201 A I  H >> S+     0   0   29  132   65  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIITTTIIVVVVVVVVTTTTTTTTTTTTTT.T
    49  202 A Q  H 3X S+     0   0   49  132    0  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ.Q
    50  203 A Q  H 3X S+     0   0  125  132   23  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGGGGGGGGQQQQQQQQQQQQQQ.Q
    51  204 A L  H  S-     0   0   51  131    8  TTTTTTTTTTTTTTTTTTTTTTTTTT  TTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTSN
    62  215 A P  H  >>S+     0   0   42  130   48  PPPPPPPPPPPPPPPPPPPPPPPPPP  PPPPPPPPQPPPPPPPPPAAAAAAAAAAA.AAST
    63  216 A G  H  45S+     0   0   48  131   44  GGGGGGGGGGGGGGGGGGGGGGGGGG  GGGGGGGGAGGGGGGGGGEEEEEEEEEEEAEEGA
    64  217 A E  H  >5S+     0   0   79  130   71  EEEEEEEEEEEEEEEEEEEEEEEEEE  EEEEEEEE EEEEEEEEELLLLLLLLLLLELLEE
    65  218 A I  H  X5S+     0   0    1  130   45  IIIIIIIIIIIIIIIIIIIIIIIIII  IIIIIIII IAAAAAAAAVVVVVVVVVVVLVVVL
    66  219 A I  H  X5S+     0   0   61  117    6  IIIIIIIIIIIIIIIIIIIIIIIIII  IIIIIIII IIIIIIIII           V .IV
    67  220 A K  H  >