Complet list of 1eit hssp file
Complete list of 1eit.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1EIT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-28
HEADER NEUROTOXIN 14-DEC-95 1EIT
COMPND MOL_ID: 1; MOLECULE: MU-AGATOXIN-I; CHAIN: A; SYNONYM: MU-AGA-I
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: AGELENOPSIS APERTA; ORGANISM_TAXID: 69
AUTHOR D.O.OMECINSKY,M.D.REILY
DBREF 1EIT A 1 36 UNP P11057 TXMG1_AGEAP 1 36
SEQLENGTH 36
NCHAIN 1 chain(s) in 1EIT data set
NALIGN 25
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXMG1_AGEAP 1EIT 1.00 1.00 1 36 1 36 36 0 0 36 P11057 Mu-agatoxin-Aa1a OS=Agelenopsis aperta PE=1 SV=1
2 : TAG3L_AGEOR 0.81 0.94 1 36 34 69 36 0 0 70 Q5Y4U7 Beta/delta-agatoxin-5 OS=Agelena orientalis PE=1 SV=1
3 : TAG3M_AGEOR 0.78 0.92 1 36 34 69 36 0 0 70 Q5Y4U6 Beta/delta-agatoxin-6 OS=Agelena orientalis PE=1 SV=1
4 : TXMG4_AGEAP 0.64 0.81 2 36 2 37 36 1 1 37 P11060 Mu-agatoxin-Aa1d OS=Agelenopsis aperta PE=1 SV=1
5 : TXMG5_AGEAP 0.64 0.81 2 36 2 37 36 1 1 37 P11061 Mu-agatoxin-Aa1e OS=Agelenopsis aperta PE=1 SV=1
6 : TXC1_HOLCU 0.63 0.83 2 36 2 36 35 0 0 36 P15967 Mu-agatoxin-Hc1a OS=Hololena curta PE=1 SV=1
7 : TAG3E_AGEOR 0.57 0.73 1 36 35 71 37 1 1 73 Q5Y4V4 U3-agatoxin-Ao1e OS=Agelena orientalis PE=2 SV=1
8 : TXMG6_AGEAP 0.57 0.78 1 36 1 37 37 1 1 37 P11062 Mu-agatoxin-Aa1f OS=Agelenopsis aperta PE=1 SV=1
9 : TAG3A_AGEOR 0.54 0.70 1 36 34 70 37 1 1 71 Q5Y4V8 Beta/delta-agatoxin-7 OS=Agelena orientalis PE=1 SV=1
10 : TAG3C_AGEOR 0.54 0.76 1 36 35 71 37 1 1 73 Q5Y4V6 Beta/delta-agatoxin-3 OS=Agelena orientalis PE=1 SV=1
11 : TAG3F_AGEOR 0.54 0.73 1 36 36 72 37 1 1 74 Q5Y4V3 Beta/delta-agatoxin-1 OS=Agelena orientalis PE=1 SV=1
12 : TAG3G_AGEOR 0.54 0.70 1 36 36 72 37 1 1 74 Q5Y4V2 Beta/delta-agatoxin-2 OS=Agelena orientalis PE=1 SV=1
13 : TAG3J_AGEOR 0.54 0.73 1 36 35 71 37 1 1 73 Q5Y4U9 U3-agatoxin-Ao1j OS=Agelena orientalis PE=2 SV=1
14 : TAG3K_AGEOR 0.54 0.76 1 36 35 71 37 1 1 73 Q5Y4U8 Beta/delta-agatoxin-4 OS=Agelena orientalis PE=1 SV=1
15 : TXDP1_PIRLC 1V90 0.54 0.65 1 36 1 37 37 1 1 37 P83256 Delta-amaurobitoxin-Pl1a OS=Pireneitega luctuosa PE=1 SV=1
16 : TAG3H_AGEOR 0.51 0.73 1 36 36 72 37 1 1 74 Q5Y4V1 U3-agatoxin-Ao1h OS=Agelena orientalis PE=2 SV=1
17 : TAG3I_AGEOR 0.51 0.76 1 36 35 71 37 1 1 73 Q5Y4V0 U3-agatoxin-Ao1i OS=Agelena orientalis PE=2 SV=1
18 : TAG3B_AGEOR 0.49 0.68 1 36 36 72 37 1 1 74 Q5Y4V7 U3-agatoxin-Ao1b OS=Agelena orientalis PE=2 SV=1
19 : TXDP2_PIRLC 1V91 0.49 0.65 1 36 1 37 37 1 1 37 P83257 Delta-amaurobitoxin-Pl1b OS=Pireneitega luctuosa PE=1 SV=1
20 : TXDP4_PIRLC 0.49 0.62 1 36 1 37 37 1 1 37 P83259 Delta-amaurobitoxin-Pl1d OS=Pireneitega luctuosa PE=1 SV=1
21 : TXMG2_AGEAP 0.49 0.68 1 36 1 37 37 1 1 37 P11058 Mu-agatoxin-Aa1b OS=Agelenopsis aperta PE=1 SV=1
22 : TAG3D_AGEOR 0.46 0.68 1 36 36 72 37 1 1 74 Q5Y4V5 U3-agatoxin-Ao1d OS=Agelena orientalis PE=2 SV=1
23 : TXC2_HOLCU 0.46 0.68 1 36 2 38 37 1 1 38 P60177 Mu-agatoxin-Hc1b OS=Hololena curta PE=1 SV=1
24 : TXC3_HOLCU 0.46 0.68 1 36 2 38 37 1 1 38 P15968 Mu-agatoxin-Hc1c OS=Hololena curta PE=1 SV=1
25 : TXMG3_AGEAP 0.46 0.68 1 36 2 38 37 1 1 38 P60178 Mu-agatoxin-Aa1c OS=Agelenopsis aperta PE=1 SV=1
## ALIGNMENTS 1 - 25
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 231 23 43 EDE GDEGDGGGGDGEAAEDDDD
2 2 A a - 0 0 58 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A V B -a 16 0A 30 26 27 VVVVVVVVAVVVVVLVVVVAAVVVV
4 4 A P > - 0 0 62 26 31 PGGGGGGGAGGGGGGGGGGTTGGGG
5 5 A E T 3 S+ 0 0 100 26 33 EEEEEEEEKEEEEEEEEDDKKDDDD
6 6 A N T 3 S+ 0 0 125 26 56 NNNNNYNSNNSSNNGSNGGNNGGGG
7 7 A G < - 0 0 19 26 53 GGGQKGQQKQQQQQEQQQQQKQQQQ
8 8 A H + 0 0 154 26 54 HRHQQRQQRQQQQQKQQRRRRRRKR
9 9 A b - 0 0 6 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A R - 0 0 64 26 51 RRRAARAAAAAAAAAAAAAAAAAAA
11 11 A D S S+ 0 0 110 26 30 DDSDDSDDDDDDDDDDNDSSDDDDD
12 12 A W S S+ 0 0 191 26 16 WWWWWAWWWWWWWWWWWWWWWWWWW
13 13 A Y S S+ 0 0 180 26 72 YYYAAYAAAASSAASSAASAAAAFA
14 14 A D S S- 0 0 91 26 34 DNNggEggggggrgggggggggggg
15 15 A E - 0 0 160 26 83 EDDhhDhhwhyyhhsyhyyywyyyy
16 16 A c B -a 3 0A 15 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
17 17 A a > - 0 0 35 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A E T 3 S+ 0 0 206 26 60 EDDDDDSDESKKSSDKSSDDDSSSS
19 19 A G T 3 S+ 0 0 36 26 0 GGGGGGGGGGGGGGGGGGGGGGGGG
20 20 A F E < S-B 34 0B 51 26 15 FFYYYYYYLYYYYYFYYYYFLYYYY
21 21 A Y E -B 33 0B 118 26 0 YYYYYYYYYYYYYYYYYYYYYYYYY
22 22 A b E -B 32 0B 13 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A S E -B 31 0B 27 26 52 SSSTTNTTSTTTTTSTTSSSSSSSS
24 24 A d E - 0 0B 31 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
25 25 A R E S- 0 0B 181 26 22 RRMRRSRRRRRRRRRQRRRRRRRRR
26 26 A Q E > S-B 29 0B 129 26 101 QQQYYQYYSYYYYYSYYSSSSSSSS
27 27 A P T 3 S+ 0 0 50 26 83 PPPFFPFFYFFFFFMFFMMYYMMMM
28 28 A P T 3 S+ 0 0 91 26 0 PPPPPPPPPPPPPPPPPPPPPPPPP
29 29 A K E < +B 26 0B 135 26 96 KYNKKYKKGKKKKKYKKYYGGYYYY
30 30 A d E - 0 0B 8 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
31 31 A I E -B 23 0B 46 26 68 IIIIILIIMIIIIIRIIRRMMRRRR
32 32 A c E -B 22 0B 3 26 0 CCCCCCCCCCCCCCCCCCCCCCCCC
33 33 A R E -B 21 0B 102 26 39 RRRRRRVVRRVVRRRVRRRRRRRRR
34 34 A N E -B 20 0B 51 26 61 NNNNNNNNPKNNKKNNKSNPPSSSS
35 35 A N 0 0 102 26 36 NNNNNNDNNDDDDDNDDDNNSDDDD
36 36 A N 0 0 161 26 47 NNNNNNNNSSNNSSSNSSSSSSSSS
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 30 9 0 0 0 0 0 0 0 0 26 0 35 23 0 0 1.292 43 0.56
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
3 3 A 85 4 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.516 17 0.73
4 4 A 0 0 0 0 0 0 0 81 4 8 0 8 0 0 0 0 0 0 0 0 26 0 0 0.692 23 0.69
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 65 0 23 26 0 0 0.865 28 0.66
6 6 A 0 0 0 0 0 0 4 27 0 0 15 0 0 0 0 0 0 0 54 0 26 0 0 1.100 36 0.43
7 7 A 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 12 65 4 0 0 26 0 0 0.969 32 0.46
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 12 38 8 42 0 0 0 26 0 0 1.178 39 0.46
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 81 0 0 0 0 0 19 0 0 0 0 0 26 0 0 0.490 16 0.49
11 11 A 0 0 0 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 4 81 26 0 0 0.586 19 0.69
12 12 A 0 0 0 0 0 96 0 0 4 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.163 5 0.84
13 13 A 0 0 0 0 4 0 19 0 58 0 19 0 0 0 0 0 0 0 0 0 26 0 0 1.077 35 0.28
14 14 A 0 0 0 0 0 0 0 77 0 0 0 0 0 0 4 0 0 4 8 8 26 0 21 0.847 28 0.65
15 15 A 0 0 0 0 0 8 38 0 0 0 4 0 0 31 0 0 0 8 0 12 26 0 0 1.499 50 0.17
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 38 0 0 0 0 12 0 12 0 38 26 0 0 1.233 41 0.40
19 19 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
20 20 A 0 8 0 0 19 0 73 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.744 24 0.85
21 21 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 54 42 0 0 0 0 0 0 4 0 26 0 0 0.823 27 0.47
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
25 25 A 0 0 0 4 0 0 0 0 0 0 4 0 0 0 88 0 4 0 0 0 26 0 0 0.484 16 0.77
26 26 A 0 0 0 0 0 0 42 0 0 0 38 0 0 0 0 0 19 0 0 0 26 0 0 1.048 34 -0.02
27 27 A 0 0 0 27 42 0 12 0 0 19 0 0 0 0 0 0 0 0 0 0 26 0 0 1.283 42 0.17
28 28 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 35 12 0 0 0 0 0 0 0 50 0 0 4 0 26 0 0 1.088 36 0.03
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
31 31 A 0 4 58 12 0 0 0 0 0 0 0 0 0 0 27 0 0 0 0 0 26 0 0 1.045 34 0.32
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 26 0 0 0.000 0 1.00
33 33 A 19 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0 0 0 26 0 0 0.490 16 0.60
34 34 A 0 0 0 0 0 0 0 0 0 12 19 0 0 0 0 15 0 0 54 0 26 0 0 1.188 39 0.38
35 35 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 46 50 26 0 0 0.829 27 0.63
36 36 A 0 0 0 0 0 0 0 0 0 0 54 0 0 0 0 0 0 0 46 0 26 0 0 0.690 23 0.52
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
4 14 15 1 gPh
5 14 15 1 gPh
7 15 49 1 gPh
8 15 15 1 gPh
9 15 48 1 gPw
10 15 49 1 gPh
11 15 50 1 gPy
12 15 50 1 gPy
13 15 49 1 rPh
14 15 49 1 gLh
15 15 15 1 gPs
16 15 50 1 gPy
17 15 49 1 gPh
18 15 50 1 gPy
19 15 15 1 gPy
20 15 15 1 gPy
21 15 15 1 gPw
22 15 50 1 gPy
23 15 16 1 gPy
24 15 16 1 gPy
25 15 16 1 gPy
//