Complet list of 1ehs hssp file
Complete list of 1ehs.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1EHS
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-28
HEADER ENTEROTOXIN 13-JUN-95 1EHS
COMPND MOL_ID: 1; MOLECULE: HEAT-STABLE ENTEROTOXIN B; CHAIN: A; SYNONYM: STB
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; ORGANISM_TAXID: 562;
AUTHOR M.SUKUMAR,J.RIZO,M.WALL,L.A.DREYFUS,Y.M.KUPERSZTOCH, L.M.GIERASCH
DBREF 1EHS A 1 48 UNP P22542 HSTI_ECOLI 24 71
SEQLENGTH 48
NCHAIN 1 chain(s) in 1EHS data set
NALIGN 7
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F4MCX8_ECOLX 1.00 1.00 1 48 24 71 48 0 0 71 F4MCX8 Heat stable enterotoxin II Stb OS=Escherichia coli UMNK88 GN=stb PE=4 SV=1
2 : HSTI_ECOLX 1EHS 1.00 1.00 1 48 24 71 48 0 0 71 P22542 Heat-stable enterotoxin II OS=Escherichia coli GN=stiI PE=1 SV=1
3 : Q541T1_ECOLX 1.00 1.00 1 48 24 71 48 0 0 71 Q541T1 Heat-stable enterotoxin STb OS=Escherichia coli GN=stb PE=4 SV=1
4 : Q9R5H3_ECOLX 1.00 1.00 1 48 1 48 48 0 0 48 Q9R5H3 STB enterotoxin (Fragment) OS=Escherichia coli PE=1 SV=1
5 : G7QEH8_ECOLX 0.98 1.00 1 48 24 71 48 0 0 71 G7QEH8 Heat-stable enterotoxin STb OS=Escherichia coli F18+ GN=stb PE=4 SV=1
6 : I2X966_ECOLX 0.96 0.98 1 48 24 71 48 0 0 71 I2X966 Heat-stable enterotoxin II OS=Escherichia coli 2.3916 GN=stiI PE=4 SV=1
7 : Q70Q73_ECOLX 0.96 0.98 1 48 24 71 48 0 0 71 Q70Q73 Heat stable enterotoxin II (STb) OS=Escherichia coli GN=stb PE=4 SV=1
## ALIGNMENTS 1 - 7
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 181 8 0 SSSSSSS
2 2 A T + 0 0 137 8 0 TTTTTTT
3 3 A Q + 0 0 59 8 0 QQQQQQQ
4 4 A S S > S+ 0 0 102 8 0 SSSSSSS
5 5 A N T 3 S+ 0 0 157 8 0 NNNNNNN
6 6 A K T 3 S+ 0 0 95 8 0 KKKKKKK
7 7 A K < + 0 0 69 8 0 KKKKKKK
8 8 A D S S+ 0 0 121 8 0 DDDDDDD
9 9 A L S > S+ 0 0 78 8 0 LLLLLLL
10 10 A a H > S+ 0 0 1 8 0 CCCCCCC
11 11 A E H > S+ 0 0 84 8 0 EEEEEEE
12 12 A H H > S+ 0 0 117 8 57 HHHHNNN
13 13 A Y H X S+ 0 0 69 8 0 YYYYYYY
14 14 A R H < S+ 0 0 82 8 0 RRRRRRR
15 15 A Q H >X S+ 0 0 91 8 47 QQQQQLQ
16 16 A I H 3X S+ 0 0 97 8 0 IIIIIII
17 17 A A H 3< S+ 0 0 2 8 0 AAAAAAA
18 18 A K H X> S+ 0 0 97 8 0 KKKKKKK
19 19 A E H 3X S+ 0 0 101 8 0 EEEEEEE
20 20 A S H 3< S+ 0 0 9 8 0 SSSSSSS
21 21 A b H <4 S+ 0 0 29 8 0 CCCCCCC
22 22 A K H < S+ 0 0 168 8 0 KKKKKKK
23 23 A K S < S- 0 0 127 8 50 KKKKKKI
24 24 A G - 0 0 49 8 0 GGGGGGG
25 25 A F S S+ 0 0 116 8 0 FFFFFFF
26 26 A L S S+ 0 0 163 8 0 LLLLLLL
27 27 A G S S+ 0 0 52 8 0 GGGGGGG
28 28 A V S S- 0 0 47 8 0 VVVVVVV
29 29 A R S S- 0 0 89 8 0 RRRRRRR
30 30 A D S S+ 0 0 149 8 0 DDDDDDD
31 31 A G S S- 0 0 51 8 0 GGGGGGG
32 32 A T S S+ 0 0 71 8 0 TTTTTTT
33 33 A A + 0 0 39 8 0 AAAAAAA
34 34 A G >>> + 0 0 2 8 0 GGGGGGG
35 35 A A T 345 - 0 0 38 8 0 AAAAAAA
36 36 A b T 345S+ 0 0 61 8 0 CCCCCCC
37 37 A F T <>5S+ 0 0 142 8 0 FFFFFFF
38 38 A G T <5S+ 0 0 26 8 0 GGGGGGG
39 39 A A T > S+ 0 0 68 8 0 QQQQQQQ
41 41 A I H >< S+ 0 0 93 8 0 IIIIIII
42 42 A M H >4 S+ 0 0 62 8 0 MMMMMMM
43 43 A V H >X>S+ 0 0 4 8 0 VVVVVVV
44 44 A A T <<5S+ 0 0 75 8 0 AAAAAAA
45 45 A A T <45S+ 0 0 98 8 0 AAAAAAA
46 46 A K T <45S- 0 0 140 8 0 KKKKKKK
47 47 A G T <5 0 0 39 8 0 GGGGGGG
48 48 A a < 0 0 63 8 0 CCCCCCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 8 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 8 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 8 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 8 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 8 0 0 0.000 0 1.00
9 9 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 8 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0 0 38 0 8 0 0 0.662 22 0.43
13 13 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 8 0 0 0.000 0 1.00
15 15 A 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 0 0 0 8 0 0 0.377 12 0.52
16 16 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 8 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 8 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 8 0 0 0.000 0 1.00
23 23 A 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 8 0 0 0.377 12 0.49
24 24 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
25 25 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
26 26 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
28 28 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 8 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 8 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
37 37 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
40 40 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 8 0 0 0.000 0 1.00
41 41 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
42 42 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
43 43 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 8 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
48 48 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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