Complet list of 1eci hssp file
Complete list of 1eci.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ECI
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-28
HEADER TOXIN 16-AUG-95 1ECI
COMPND MOL_ID: 1; MOLECULE: ECTATOMIN; CHAIN: A; MOL_ID: 2; MOLECULE: ECTATOM
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ECTATOMMA TUBERCULATUM; ORGANISM_TAXID
AUTHOR D.E.NOLDE,A.G.SOBOL,K.A.PLUZHNIKOV,A.S.ARSENIEV,E.V.GRISHIN
DBREF 1ECI A 1 37 UNP P49343 ECAA_ECTTU 1 37
DBREF 1ECI B 1 34 UNP P49344 ECAB_ECTTU 1 34
SEQLENGTH 71
NCHAIN 2 chain(s) in 1ECI data set
NALIGN 3
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : ECAA_ECTTU 1ECI 1.00 1.00 1 37 1 37 37 0 0 37 P49343 Ectatomin subunit A OS=Ectatomma tuberculatum PE=1 SV=1
2 : ECAB_ECTTU 1ECI 1.00 1.00 39 72 1 34 34 0 0 34 P49344 Ectatomin subunit B OS=Ectatomma tuberculatum PE=1 SV=1
3 : ECAA_ECTTU 1ECI 0.58 0.77 47 72 11 36 26 0 0 37 P49343 Ectatomin subunit A OS=Ectatomma tuberculatum PE=1 SV=1
## ALIGNMENTS 1 - 3
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 124 2 0 G
2 2 A V - 0 0 130 2 0 V
3 3 A I - 0 0 10 2 0 I
4 4 A P > - 0 0 68 2 0 P
5 5 A K H > S+ 0 0 146 2 0 K
6 6 A K H > S+ 0 0 140 2 0 K
7 7 A I H > S+ 0 0 21 2 0 I
8 8 A W H X S+ 0 0 10 2 0 W
9 9 A E H < S+ 0 0 73 2 0 E
10 10 A T H < S+ 0 0 66 2 0 T
11 11 A V H >X S+ 0 0 1 2 0 V
12 12 A a H 3X S+ 0 0 26 2 0 C
13 13 A P H 34 S+ 0 0 89 2 0 P
14 14 A T H <4 S+ 0 0 47 2 0 T
15 15 A V H X S+ 0 0 3 2 0 V
16 16 A E H X S+ 0 0 89 2 0 E
17 17 A P H > S+ 0 0 51 2 0 P
18 18 A W H 4 S+ 0 0 13 2 0 W
19 19 A A H >< S+ 0 0 7 2 0 A
20 20 A K H 3< S+ 0 0 126 2 0 K
21 21 A K T 3< S+ 0 0 116 2 0 K
22 22 A b B < -A 58 0A 14 2 0 C
23 23 A S > + 0 0 42 2 0 S
24 24 A G H > S- 0 0 33 2 0 G
25 25 A D H > S+ 0 0 145 2 0 D
26 26 A I H > S+ 0 0 53 2 0 I
27 27 A A H X S+ 0 0 6 2 0 A
28 28 A T H X S+ 0 0 91 2 0 T
29 29 A Y H X S+ 0 0 85 2 0 Y
30 30 A I H X S+ 0 0 1 2 0 I
31 31 A K H X S+ 0 0 111 2 0 K
32 32 A R H X S+ 0 0 149 2 0 R
33 33 A E H < S+ 0 0 42 2 0 E
34 34 A a H < S+ 0 0 37 2 0 C
35 35 A G H < S+ 0 0 58 2 0 G
36 36 A K < 0 0 159 2 0 K
37 37 A L 0 0 131 2 0 L
38 ! ! 0 0 0 0 0
39 1 B W 0 0 108 2 0 W
40 2 B S - 0 0 47 2 0 S
41 3 B T S > S+ 0 0 111 2 0 T
42 4 B I H > S+ 0 0 114 2 0 I
43 5 B V H > S+ 0 0 22 2 0 V
44 6 B K H > S+ 0 0 33 2 0 K
45 7 B L H < S+ 0 0 101 2 0 L
46 8 B T H < S+ 0 0 37 2 0 T
47 9 B I H >X S+ 0 0 0 3 26 IV
48 10 B c H 3X S+ 0 0 2 3 0 CC
49 11 B P H 3> S+ 0 0 72 3 0 PP
50 12 B T H <> S+ 0 0 28 3 0 TT
51 13 B L H X S+ 0 0 0 3 46 LV
52 14 B K H X S+ 0 0 36 3 80 KE
53 15 B S H < S+ 0 0 59 3 73 SP
54 16 B M H >< S+ 0 0 1 3 120 MW
55 17 B A H >< S+ 0 0 8 3 0 AA
56 18 B K T 3< S+ 0 0 154 3 0 KK
57 19 B K T < S+ 0 0 140 3 0 KK
58 20 B b B < -A 22 0A 28 3 0 CC
59 21 B E S > S- 0 0 84 3 86 ES
60 22 B G T 3 S- 0 0 89 3 0 GG
61 23 B S T >> S+ 0 0 70 3 86 SD
62 24 B I H <> + 0 0 13 3 0 II
63 25 B A H 3> S+ 0 0 36 3 0 AA
64 26 B T H <> S+ 0 0 79 3 0 TT
65 27 B M H X S+ 0 0 89 3 106 MY
66 28 B I H X S+ 0 0 0 3 0 II
67 29 B K H < S+ 0 0 124 3 0 KK
68 30 B K H < S+ 0 0 166 3 46 KR
69 31 B K H < S+ 0 0 105 3 80 KE
70 32 B c S < S- 0 0 10 3 0 CC
71 33 B D 0 0 73 3 53 DG
72 34 B K 0 0 225 3 0 KK
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
2 2 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
3 3 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
7 7 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
11 11 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
15 15 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00
26 26 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
30 30 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
37 37 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.000 0 1.00
39 1 B 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
40 2 B 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
41 3 B 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
42 4 B 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
43 5 B 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
44 6 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00
45 7 B 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
46 8 B 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
47 9 B 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.73
48 10 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
49 11 B 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
50 12 B 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
51 13 B 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.53
52 14 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 0 0 3 0 0 0.637 21 0.20
53 15 B 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.27
54 16 B 0 0 0 67 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 -0.20
55 17 B 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
56 18 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
57 19 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
58 20 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
59 21 B 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 67 0 0 3 0 0 0.637 21 0.13
60 22 B 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
61 23 B 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 33 3 0 0 0.637 21 0.13
62 24 B 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
63 25 B 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
64 26 B 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
65 27 B 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 -0.07
66 28 B 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
67 29 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
68 30 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 3 0 0 0.637 21 0.53
69 31 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 0 0 3 0 0 0.637 21 0.20
70 32 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
71 33 B 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 67 3 0 0 0.637 21 0.47
72 34 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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