Complet list of 1e8q hssp file
Complete list of 1e8q.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1E8Q
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-14
HEADER CELLULOSE DOCKING DOMAIN 28-SEP-00 1E8Q
COMPND MOL_ID: 1; MOLECULE: ENDOGLUCANASE; CHAIN: A; FRAGMENT: CELLULOSE DOCK
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: PIROMYCES EQUI; ORGANISM_TAXID: 99929;
AUTHOR S.RAGHOTHAMA,R.Y.EBERHARDT,P.WHITE,G.P.HAZLEWOOD, H.J.GILBERT,P.J.SIMP
DBREF 1E8Q A 1 46 UNP CAB92325 CAB92325 20 65
SEQLENGTH 46
NCHAIN 1 chain(s) in 1E8Q data set
NALIGN 27
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q9P868_PIREQ2J4M 0.98 1.00 1 46 20 65 46 0 0 410 Q9P868 Endoglucanase 45A OS=Piromyces equi GN=cel45A PE=1 SV=1
2 : H2BPT8_NEOPA 0.64 0.87 2 40 63 100 39 1 1 480 H2BPT8 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
3 : Q96V97_ORPSP 0.62 0.88 1 40 19 57 40 1 1 490 Q96V97 Cellobiohydrolase II-like cellulase CelI OS=Orpinomyces sp. (strain PC-2) GN=celI PE=2 SV=1
4 : H2BPT2_NEOPA 0.60 0.82 1 40 62 100 40 1 1 493 H2BPT2 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
5 : H2BPT9_NEOPA 0.60 0.85 1 40 19 57 40 1 1 491 H2BPT9 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
6 : Q96V98_ORPSP 0.57 0.80 1 40 62 99 40 1 2 491 Q96V98 Cellobiohydrolase II-like cellulase CelH OS=Orpinomyces sp. (strain PC-2) GN=celH PE=2 SV=1
7 : H2BPT3_NEOPA 0.55 0.77 1 40 62 99 40 1 2 492 H2BPT3 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
8 : H2BPU0_NEOPA 0.55 0.82 1 40 66 104 40 1 1 483 H2BPU0 Putative cellulase (Fragment) OS=Neocallimastix patriciarum PE=2 SV=1
9 : G3FNU3_9FUNG 0.53 0.76 3 40 435 470 38 1 2 471 G3FNU3 Cellulase OS=Orpinomyces sp. LT-3 GN=celB PE=4 SV=1
10 : GUNB_NEOPA 0.53 0.74 3 40 437 472 38 1 2 473 Q12647 Endoglucanase B OS=Neocallimastix patriciarum GN=CELB PE=2 SV=1
11 : P78719_ORPSP 0.53 0.76 3 40 435 470 38 1 2 471 P78719 Cellulase OS=Orpinomyces sp. (strain PC-2) GN=celB PE=4 SV=1
12 : E3W3U5_9FUNG 0.52 0.70 2 41 65 102 40 1 2 485 E3W3U5 Glycosyl hydrolase family 6 exoglucanase OS=Piromyces sp. AF-CTS-EMP1 PE=2 SV=1
13 : Q7Z7X6_PIREQ 0.52 0.70 2 41 65 102 40 1 2 486 Q7Z7X6 Cellulosomal glycoside hydrolase family 6 exoglucanase Cel6A OS=Piromyces equi PE=2 SV=1
14 : Q870B1_PIRSE 0.52 0.80 1 40 19 57 40 1 1 172 Q870B1 Cellobiohydrolase Cel6C (Fragment) OS=Piromyces sp. (strain E2) PE=4 SV=1
15 : Q874K3_PIRSE 0.52 0.77 1 40 61 98 40 1 2 491 Q874K3 Exoglucanase Cel6A (Precursor) OS=Piromyces sp. (strain E2) GN=cel6A PE=4 SV=1
16 : Q1EH95_PIRSE 0.51 0.64 2 40 99 134 39 1 3 221 Q1EH95 Cellulosomal serpin (Precursor) OS=Piromyces sp. (strain E2) GN=celpin PE=4 SV=1
17 : Q870A9_PIRSE 0.51 0.62 2 40 88 123 39 1 3 170 Q870A9 Beta-glucosidase family 3 protein Cel3A (Fragment) OS=Piromyces sp. (strain E2) PE=4 SV=1
18 : Q870B4_PIRSE 0.51 0.73 1 41 95 133 41 1 2 133 Q870B4 Mannanase ManA (Fragment) OS=Piromyces sp. (strain E2) PE=4 SV=1
19 : Q96V95_ORPSP 0.51 0.74 3 41 98 133 39 1 3 229 Q96V95 Endo-glucanase CelJ OS=Orpinomyces sp. (strain PC-2) GN=celJ PE=2 SV=1
20 : H2BPT7_NEOPA 0.50 0.73 1 40 430 469 40 0 0 512 H2BPT7 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
21 : O13495_NEOPA 0.50 0.75 1 40 347 386 40 0 0 393 O13495 Acetylxylan esterase OS=Neocallimastix patriciarum GN=bnaI PE=2 SV=1
22 : Q874K1_PIRSE 0.50 0.72 5 40 7 40 36 1 2 97 Q874K1 Cellulosomal glycoside hydrolase family 6 exoglucanase Cel6E (Fragment) OS=Piromyces sp. (strain E2) GN=cel6E PE=4 SV=1
23 : O93860_9FUNG 0.48 0.75 1 40 390 429 40 0 0 472 O93860 Exocellobiohydrolase OS=Piromyces rhizinflatus GN=chb29 PE=2 SV=1
24 : H2BPT4_NEOPA 0.45 0.75 1 40 19 57 40 1 1 484 H2BPT4 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
25 : H2BPU5_NEOPA 0.44 0.72 2 40 394 430 39 1 2 480 H2BPU5 Putative cellulase OS=Neocallimastix patriciarum PE=2 SV=1
26 : O13334_9FUNG 0.44 0.74 2 40 350 387 39 1 1 388 O13334 Cellulase OS=Orpinomyces joyonii GN=celB2 PE=2 SV=1
27 : Q9C171_PIREQ1WCU 0.44 0.83 1 41 104 142 41 1 2 478 Q9C171 Non-catalytic protein 1 OS=Piromyces equi GN=ncp1 PE=1 SV=1
## ALIGNMENTS 1 - 27
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 116 16 42 A AAAPAP AT A PP PA P
2 2 A S + 0 0 67 23 53 ASAAATSS SSATSTS AA AATGT
3 3 A a - 0 0 8 27 0 CCCCCCCCCCCCCCCCCCCCC CCCCC
4 4 A W S > S+ 0 0 58 27 2 WWWWWWWWWWWWWWWFFWFWW WWWWW
5 5 A A G >>>S+ 0 0 0 28 37 ASSSSASSSSSSSSSSSSAAASASAAS
6 6 A Q G 345S+ 0 0 130 28 57 QEETEEQEEEEEETQVIEKEKQEEKTE
7 7 A S G <45S+ 0 0 110 28 73 SSSGSRASRKRKKNAAKAAVDAASAEA
8 8 A Q T <45S- 0 0 121 28 30 QQLLLLLLLLLLLLLLLLLLLLLQLLL
9 9 A G T <5S+ 0 0 61 27 0 GGGGGGGGGGGGGGGGGGGGGXGGGGG
10 10 A Y < - 0 0 100 28 0 YYYYYYFYYYYYYYYYYYYYYYYYYFY
11 11 A N E -a 38 0A 79 28 52 NPPPPPPPPPPPPPPPPPEKPPKPKEK
12 12 A a E -a 39 0A 36 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
13 13 A b - 0 0 1 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
14 14 A N S S- 0 0 94 14 73 NSS....SQ.Q..S...V.TS.TS.S.
15 15 A N S > S- 0 0 119 16 77 NSSSS..SY.Y..S...S.PT.PS.E.
16 16 A P G > S+ 0 0 15 25 70 PPPSSTTSTQTKKST..T.GSTGPSGQ
17 17 A S G 3 S+ 0 0 93 28 63 SNNSSTSNTNTSSNSKKSNATSANSNT
18 18 A S G < S+ 0 0 113 28 75 SAASSTTANTNTTATSGDDYCTYACTT
19 19 A T S < S- 0 0 21 28 81 TENAATSEASASSESCNVNTRSTELRS
20 20 A K - 0 0 179 22 84 K..EKTT..S.AA.DKEYEPTDPVPVK
21 21 A V E +B 31 0A 44 25 18 VVVVVVVV.V.VVVVVV.IVVVVWVVI
22 22 A E E + 0 0A 106 27 93 EWEWEEYWEVEVVYAYA.VLYALYYAE
23 23 A Y E +B 30 0A 73 28 41 YYYYYYYYYYYYYYYVYYFVYYLTFTF
24 24 A T E +B 29 0A 89 28 41 TTTTTTSTTTTQQTVTTTTTTVTDTDT
25 25 A D E > S-B 28 0A 89 28 5 DDDDDDDDDDDDDDDDDDDDDDDEDED
26 26 A A T 3 S+ 0 0 111 27 62 AEADNSNDNNNAANGKNNEEAGESD.N
27 27 A S T 3 S- 0 0 16 28 53 SSDSDDDSDDDDDDDYDDSSDDSGDND
28 28 A G E < -B 25 0A 35 28 9 GGGGGGGGGGGGGGGGGGGGGGGKGGG
29 29 A Q E -BC 24 40A 107 27 60 QKKKKKDKRKRDDKNDQNNDKND.AKN
30 30 A W E -BC 23 39A 3 28 0 WWWWWWWWWWWWWWWWWWWWWWWWWWW
31 31 A G E -BC 21 38A 0 28 18 GGGGGGGGGGGGGGGGGGGSDGSGSGG
32 32 A V E + C 0 37A 62 28 30 VVVVIVVVVVVVVVVVFVVAVVAVIVF
33 33 A Q E > + C 0 36A 69 28 24 QEEEEEEEEEEEEEEEEEKEEEEEVEE
34 34 A N T 3 S- 0 0 164 28 0 NNNNNNNNNNNNNNNNNNNNNNNNNNN
35 35 A G T 3 S+ 0 0 76 28 32 GGGGNGGNGGGNNGGNGGGGNGGNDGG
36 36 A Q E < - C 0 33A 80 28 45 QDNDNNNDNNNDDNNKQNQEDNEDDND
37 37 A W E - C 0 32A 73 28 0 WWWWWWWWWWWWWWWWWWWWWWWWWWW
38 38 A b E -aC 11 31A 1 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
39 39 A G E -aC 12 30A 0 28 0 GGGGGGGGGGGGGGGGGGGGGGGGGGG
40 40 A I E + C 0 29A 14 28 13 IIIIIIIIIIIIIIIIILIIIILILIL
41 41 A D - 0 0 25 7 72 D SS NG Q
42 42 A Y S S+ 0 0 190 2 0 Y
43 43 A S S S+ 0 0 65 2 0 S
44 44 A Y + 0 0 42 2 0 Y
45 45 A G 0 0 71 2 0 G
46 46 A Q 0 0 239 2 0 Q
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 56 38 0 6 0 0 0 0 0 0 0 0 16 0 0 0.865 28 0.58
2 2 A 0 0 0 0 0 0 0 4 39 0 35 22 0 0 0 0 0 0 0 0 23 0 0 1.203 40 0.47
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
4 4 A 0 0 0 0 11 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0.349 11 0.97
5 5 A 0 0 0 0 0 0 0 0 32 0 68 0 0 0 0 0 0 0 0 0 28 0 0 0.628 20 0.62
6 6 A 4 0 4 0 0 0 0 0 0 0 0 11 0 0 0 11 18 54 0 0 28 0 0 1.359 45 0.42
7 7 A 4 0 0 0 0 0 0 4 32 0 25 0 0 0 11 14 0 4 4 4 28 0 0 1.824 60 0.27
8 8 A 0 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 28 0 0 0.410 13 0.70
9 9 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
10 10 A 0 0 0 0 7 0 93 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.257 8 0.99
11 11 A 0 0 0 0 0 0 0 0 0 71 0 0 0 0 0 14 0 7 7 0 28 0 0 0.895 29 0.48
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 28 14 0 0.000 0 1.00
14 14 A 7 0 0 0 0 0 0 0 0 0 50 14 0 0 0 0 14 0 14 0 14 0 0 1.369 45 0.26
15 15 A 0 0 0 0 0 0 13 0 0 13 50 6 0 0 0 0 0 6 13 0 16 0 0 1.473 49 0.22
16 16 A 0 0 0 0 0 0 0 12 0 20 24 28 0 0 0 8 8 0 0 0 25 0 0 1.679 56 0.29
17 17 A 0 0 0 0 0 0 0 0 7 0 39 18 0 0 0 7 0 0 29 0 28 0 0 1.410 47 0.37
18 18 A 0 0 0 0 0 0 7 4 18 0 18 32 7 0 0 0 0 0 7 7 28 0 0 1.853 61 0.24
19 19 A 4 4 0 0 0 0 0 0 14 0 25 18 4 0 7 0 0 14 11 0 28 6 0 1.995 66 0.19
20 20 A 9 0 0 0 0 0 5 0 9 14 5 14 0 0 0 23 0 14 0 9 22 1 0 2.087 69 0.15
21 21 A 88 0 8 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0.443 14 0.81
22 22 A 15 7 0 0 0 11 22 0 15 0 0 0 0 0 0 0 0 30 0 0 27 0 0 1.697 56 0.06
23 23 A 7 4 0 0 11 0 71 0 0 0 0 7 0 0 0 0 0 0 0 0 28 0 0 0.976 32 0.59
24 24 A 7 0 0 0 0 0 0 0 0 0 4 75 0 0 0 0 7 0 0 7 28 0 0 0.900 30 0.58
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 93 28 1 0 0.257 8 0.94
26 26 A 0 0 0 0 0 0 0 7 22 0 7 0 0 0 0 4 0 15 33 11 27 0 0 1.735 57 0.38
27 27 A 0 0 0 0 0 0 4 4 0 0 29 0 0 0 0 0 0 0 4 61 28 0 0 1.018 33 0.47
28 28 A 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 4 0 0 0 0 28 1 0 0.154 5 0.91
29 29 A 0 0 0 0 0 0 0 0 4 0 0 0 0 0 7 37 11 0 19 22 27 0 0 1.573 52 0.39
30 30 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 86 0 0 11 0 0 0 0 0 0 0 0 4 28 0 0 0.490 16 0.81
32 32 A 79 0 7 0 7 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.755 25 0.70
33 33 A 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 86 0 0 28 0 0 0.559 18 0.75
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 28 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 71 0 0 0 0 0 0 0 0 0 0 25 4 28 0 0 0.706 23 0.67
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 14 7 43 32 28 0 0 1.313 43 0.55
37 37 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
40 40 A 0 14 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0.410 13 0.87
41 41 A 0 0 0 0 0 0 0 14 0 0 29 0 0 0 0 0 14 0 14 29 7 0 0 1.550 51 0.28
42 42 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
43 43 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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