Complet list of 1e68 hssp file
Complete list of 1e68.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1E68
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-28
HEADER ANTIBIOTIC 09-AUG-00 1E68
COMPND MOL_ID: 1; MOLECULE: AS-48 PROTEIN; CHAIN: A; FRAGMENT: BACTERIOCIN AS
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; ORGANISM_TAXID:
AUTHOR C.GONZALEZ,G.LANGDON,M.BRUIX,A.GALVEZ,E.VALDIVIA,M.MAQUEDA,M.RICO
DBREF 1E68 A 1 70 UNP Q47765 Q47765 36 105
SEQLENGTH 70
NCHAIN 1 chain(s) in 1E68 data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q47765_ENTFL1O82 1.00 1.00 1 70 36 105 70 0 0 105 Q47765 AS-48 protein (Precursor) OS=Enterococcus faecalis GN=as-48 PE=1 SV=1
2 : R3HRY1_ENTFL 1.00 1.00 1 70 36 105 70 0 0 105 R3HRY1 Circularin A/uberolysin family circular bacteriocin OS=Enterococcus faecalis EnGen0369 GN=WO9_02914 PE=4 SV=1
3 : O52963_ENTFL 0.99 0.99 1 70 36 105 70 0 0 105 O52963 BacA protein OS=Enterococcus faecalis GN=bacA PE=4 SV=1
4 : I4VG31_9BACI 0.80 0.96 1 70 39 108 70 0 0 108 I4VG31 Uncharacterized protein OS=Bacillus sp. M 2-6 GN=BAME_05460 PE=4 SV=1
5 : W2EF47_9BACL 0.74 0.90 1 70 39 108 70 0 0 108 W2EF47 Uncharacterized protein OS=Paenibacillus larvae subsp. larvae DSM 25719 GN=ERIC1_1c30390 PE=4 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M >> 0 0 0 6 11 MMMLL
2 2 A A I >> + 0 0 36 6 0 AAAAA
3 3 A K I 45S+ 0 0 182 6 0 KKKKK
4 4 A E I 45S+ 0 0 128 6 0 EEEEE
5 5 A F I <5S- 0 0 35 6 0 FFFFF
6 6 A G I << + 0 0 42 6 0 GGGGG
7 7 A I < - 0 0 13 6 0 IIIII
8 8 A P >> - 0 0 58 6 0 PPPPP
9 9 A A H 3> S+ 0 0 52 6 25 AAAGA
10 10 A A H 3> S+ 0 0 74 6 64 AAASS
11 11 A V H <> S+ 0 0 8 6 15 VVVVI
12 12 A A H X S+ 0 0 0 6 0 AAAAA
13 13 A G H X S+ 0 0 29 6 47 GGGAA
14 14 A T H X S+ 0 0 40 6 76 TTTVV
15 15 A V H X S+ 0 0 0 6 0 VVVVV
16 16 A L H X S+ 0 0 14 6 0 LLLLL
17 17 A N H X S+ 0 0 92 6 0 NNNNN
18 18 A V H X>S+ 0 0 0 6 15 VVVVI
19 19 A V H <5S+ 0 0 6 6 0 VVVVV
20 20 A E H <5S+ 0 0 136 6 39 EEEEN
21 21 A A H <5S- 0 0 77 6 0 AAAAA
22 22 A G T <5 + 0 0 48 6 0 GGGGG
23 23 A G < - 0 0 17 6 0 GGGGG
24 24 A W >> - 0 0 180 6 135 WWWAA
25 25 A V H 3> S+ 0 0 22 6 0 VVVVV
26 26 A T H 3> S+ 0 0 93 6 0 TTTTT
27 27 A T H <> S+ 0 0 85 6 0 TTTTT
28 28 A I H X S+ 0 0 9 6 0 IIIII
29 29 A V H X S+ 0 0 40 6 0 VVVVV
30 30 A S H X S+ 0 0 66 6 0 SSSSS
31 31 A I H < S+ 0 0 79 6 30 IINII
32 32 A L H >< S+ 0 0 0 6 0 LLLLL
33 33 A T H >< S+ 0 0 54 6 63 TTTTL
34 34 A A T 3< S+ 0 0 88 6 0 AAAAA
35 35 A V T < S- 0 0 62 6 0 VVVVV
36 36 A G S X> S+ 0 0 30 6 0 GGGGG
37 37 A S H 3> S+ 0 0 91 6 0 SSSSS
38 38 A G H 3> S+ 0 0 0 6 0 GGGGG
39 39 A G H <> S+ 0 0 0 6 0 GGGGG
40 40 A L H X S+ 0 0 112 6 0 LLLLL
41 41 A S H X S+ 0 0 41 6 0 SSSSS
42 42 A L H >X S+ 0 0 1 6 0 LLLLL
43 43 A L H 3< S+ 0 0 41 6 22 LLLIL
44 44 A A H >< S+ 0 0 79 6 0 AAAAA
45 45 A A H << S- 0 0 51 6 0 AAAAA
46 46 A A T 3< S+ 0 0 18 6 0 AAAAA
47 47 A G S X S+ 0 0 44 6 0 GGGGG
48 48 A R T 3 S+ 0 0 257 6 41 RRRKK
49 49 A E T 3 S- 0 0 99 6 0 EEEEE
50 50 A S <> - 0 0 51 6 70 SSSTT
51 51 A I H > S+ 0 0 14 6 0 IIIII
52 52 A K H > S+ 0 0 54 6 41 KKKRR
53 53 A A H > S+ 0 0 41 6 76 AAAQQ
54 54 A Y H X S+ 0 0 33 6 3 YYYYF
55 55 A L H X>S+ 0 0 0 6 0 LLLLL
56 56 A K H X5S+ 0 0 45 6 0 KKKKK
57 57 A K H X5S+ 0 0 117 6 35 KKKNK
58 58 A E H >X5S+ 0 0 46 6 47 EEEEK
59 59 A I H 3X5S+ 0 0 0 6 0 IIIII
60 60 A K H 3<X - 0 0 32 6 0 GGGGG
64 64 A K H 3> S+ 0 0 66 6 22 KKKRK
65 65 A R H 3> S+ 0 0 204 6 22 RRRKR
66 66 A A H <> S+ 0 0 38 6 0 AAAAA
67 67 A V H < S+ 0 0 0 6 51 VVVVT
68 68 A I H < S+ 0 0 64 6 0 IIIII
69 69 A A H < 0 0 57 6 0 AAAAA
70 70 A W < 0 0 36 6 0 WWWWW
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.88
2 2 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
5 5 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 17 83 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.74
10 10 A 0 0 0 0 0 0 0 0 67 0 33 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.35
11 11 A 83 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.84
12 12 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 67 33 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.53
14 14 A 33 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.23
15 15 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
16 16 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
18 18 A 83 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.84
19 19 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 6 0 0 0.451 15 0.61
21 21 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 -0.36
25 25 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
28 28 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
29 29 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 6 0 0 0.451 15 0.70
32 32 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
33 33 A 0 17 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.37
34 34 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
35 35 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
40 40 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
42 42 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
43 43 A 0 83 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.77
44 44 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
48 48 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 33 0 0 0 0 6 0 0 0.637 21 0.59
49 49 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 67 33 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.29
51 51 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
52 52 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 6 0 0 0.637 21 0.59
53 53 A 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 33 0 0 0 6 0 0 0.637 21 0.23
54 54 A 0 0 0 0 17 0 83 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.96
55 55 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
57 57 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 0 17 0 6 0 0 0.451 15 0.65
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 83 0 0 6 0 0 0.451 15 0.53
59 59 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
60 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 6 0 0 0.451 15 0.57
61 61 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 17 0 0 6 0 0 0.451 15 0.53
62 62 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
63 63 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
64 64 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 83 0 0 0 0 6 0 0 0.451 15 0.77
65 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 0 6 0 0 0.451 15 0.77
66 66 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
67 67 A 83 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.49
68 68 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
69 69 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
70 70 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//