Complet list of 1e0n hssp file
Complete list of 1e0n.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1E0N
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER YJQ8WW DOMAIN 01-APR-00 1E0N
COMPND MOL_ID: 1; MOLECULE: HYPOTHETICAL PROTEIN; CHAIN: A; FRAGMENT: DOMAIN;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; ORGANISM_TAX
AUTHOR M.J.MACIAS,V.GERVAIS,C.CIVERA,H.OSCHKINAT
DBREF 1E0N A 7 33 PDB 1E0N 1E0N 7 33
SEQLENGTH 27
NCHAIN 1 chain(s) in 1E0N data set
NALIGN 35
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A6ZQG4_YEAS7 1.00 1.00 1 27 479 505 27 0 0 733 A6ZQG4 SET domain-containing protein OS=Saccharomyces cerevisiae (strain YJM789) GN=SET2 PE=4 SV=1
2 : B3LPV5_YEAS1 1.00 1.00 1 27 479 505 27 0 0 733 B3LPV5 SET domain protein 2 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_03508 PE=4 SV=1
3 : B5VL18_YEAS6 1.00 1.00 1 27 479 505 27 0 0 733 B5VL18 YJL168Cp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_100420 PE=4 SV=1
4 : C7GRZ6_YEAS2 1.00 1.00 1 27 479 505 27 0 0 733 C7GRZ6 Set2p OS=Saccharomyces cerevisiae (strain JAY291) GN=SET2 PE=4 SV=1
5 : C8ZAZ6_YEAS8 1.00 1.00 1 27 479 505 27 0 0 733 C8ZAZ6 Set2p OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=EC1118_1J11_0683g PE=4 SV=1
6 : E7KE35_YEASA 1.00 1.00 1 27 479 505 27 0 0 537 E7KE35 Set2p OS=Saccharomyces cerevisiae (strain AWRI796) GN=AWRI796_2493 PE=4 SV=1
7 : E7KQ49_YEASL 1.00 1.00 1 27 479 505 27 0 0 650 E7KQ49 Set2p OS=Saccharomyces cerevisiae (strain Lalvin QA23) GN=QA23_2485 PE=4 SV=1
8 : E7LW72_YEASV 1.00 1.00 1 27 479 505 27 0 0 733 E7LW72 Set2p OS=Saccharomyces cerevisiae (strain VIN 13) GN=VIN13_2475 PE=4 SV=1
9 : E7QGC2_YEASZ 1.00 1.00 1 27 479 505 27 0 0 683 E7QGC2 Set2p OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=VL3_2486 PE=4 SV=1
10 : G2WGK5_YEASK 1.00 1.00 1 27 479 505 27 0 0 733 G2WGK5 K7_Set2p OS=Saccharomyces cerevisiae (strain Kyokai no. 7 / NBRC 101557) GN=K7_SET2 PE=4 SV=1
11 : H0GII5_9SACH 1.00 1.00 1 27 479 505 27 0 0 733 H0GII5 Set2p OS=Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 GN=VIN7_2532 PE=4 SV=1
12 : J8Q6K1_SACAR 1.00 1.00 1 27 482 508 27 0 0 736 J8Q6K1 Set2p OS=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) GN=SU7_1706 PE=4 SV=1
13 : N1P903_YEASC 1.00 1.00 1 27 479 505 27 0 0 733 N1P903 Set2p OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) GN=CENPK1137D_1465 PE=4 SV=1
14 : SET2_YEAST 1.00 1.00 1 27 479 505 27 0 0 733 P46995 Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SET2 PE=1 SV=2
15 : W7PE59_YEASX 1.00 1.00 1 27 479 505 27 0 0 733 W7PE59 Set2p OS=Saccharomyces cerevisiae R008 GN=Set2 PE=4 SV=1
16 : W7QWW4_YEASX 1.00 1.00 1 27 479 505 27 0 0 733 W7QWW4 Set2p OS=Saccharomyces cerevisiae P283 GN=Set2 PE=4 SV=1
17 : G8BN76_TETPH 0.85 0.92 2 27 460 485 26 0 0 707 G8BN76 Uncharacterized protein OS=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) GN=TPHA0A02720 PE=4 SV=1
18 : C5DKG6_LACTC 0.81 0.96 1 27 455 481 27 0 0 686 C5DKG6 KLTH0F04510p OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=KLTH0F04510g PE=4 SV=1
19 : C5E179_ZYGRC 0.81 0.96 1 27 455 481 27 0 0 680 C5E179 ZYRO0G18766p OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=ZYRO0G18766g PE=4 SV=1
20 : I2H9Q0_TETBL 0.81 0.96 1 27 471 497 27 0 0 745 I2H9Q0 Uncharacterized protein OS=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) GN=TBLA0J01040 PE=4 SV=1
21 : SET2_CANGA 0.81 0.93 1 27 483 509 27 0 0 716 Q6FX50 Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SET2 PE=3 SV=1
22 : H2AWM4_KAZAF 0.78 0.89 1 27 467 493 27 0 0 711 H2AWM4 Uncharacterized protein OS=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) GN=KAFR0F01770 PE=4 SV=1
23 : S6EIN4_ZYGB2 0.78 0.93 1 27 454 480 27 0 0 679 S6EIN4 ZYBA0S06-05842g1_1 OS=Zygosaccharomyces bailii (strain CLIB 213 / ATCC 58445 / CBS 680 / CCRC 21525 / NBRC 1098 / NCYC 1416 / NRRL Y-2227) GN=BN860_05842g PE=4 SV=1
24 : W0VND9_ZYGBA 0.78 0.93 1 27 454 480 27 0 0 679 W0VND9 Probable Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Zygosaccharomyces bailii ISA1307 GN=ZbSET2 PE=4 SV=1
25 : W0W441_ZYGBA 0.78 0.93 1 27 454 480 27 0 0 679 W0W441 Probable Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Zygosaccharomyces bailii ISA1307 GN=ZbSET2 PE=4 SV=1
26 : G8ZYV1_TORDC 0.74 0.96 1 27 455 481 27 0 0 687 G8ZYV1 Uncharacterized protein OS=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) GN=TDEL0G02090 PE=4 SV=1
27 : A7TGR7_VANPO 0.70 0.93 1 27 458 484 27 0 0 693 A7TGR7 Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_2001p35 PE=4 SV=1
28 : M9N595_ASHG1 0.69 0.85 2 27 457 482 26 0 0 684 M9N595 FAEL128Cp OS=Ashbya gossypii (strain FDAG1) GN=FAGOS_FAEL128C PE=4 SV=1
29 : R9XE46_ASHAC 0.69 0.85 2 27 457 482 26 0 0 684 R9XE46 AaceriAEL128Cp OS=Ashbya aceri GN=AACERI_AaceriAEL128C PE=4 SV=1
30 : SET2_ASHGO 0.69 0.85 2 27 457 482 26 0 0 684 Q757Y8 Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SET2 PE=3 SV=2
31 : SET2_KLULA 0.69 0.85 2 27 450 475 26 0 0 702 Q6CXP5 Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SET2 PE=3 SV=1
32 : J7RWH2_KAZNA 0.67 0.85 1 27 457 483 27 0 0 708 J7RWH2 Uncharacterized protein OS=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC 22969 / KCTC 17520 / NBRC 10181 / NCYC 3082) GN=KNAG0C02410 PE=4 SV=1
33 : G0VKC2_NAUCC 0.65 0.88 2 27 455 480 26 0 0 726 G0VKC2 Uncharacterized protein OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=NCAS0I02880 PE=4 SV=1
34 : G0W5J9_NAUDC 0.65 0.77 2 27 465 490 26 0 0 795 G0W5J9 Uncharacterized protein OS=Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) GN=NDAI0B00260 PE=4 SV=1
35 : W0T3M6_KLUMA 0.62 0.85 2 27 451 476 26 0 0 712 W0T3M6 Histone-lysine N-methyltransferase OS=Kluyveromyces marxianus DMKU3-1042 GN=KLMA_10383 PE=4 SV=1
## ALIGNMENTS 1 - 35
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 7 A P 0 0 158 28 0 PPPPPPPPPPPPPPPP PPPPPPPPPP P
2 8 A G + 0 0 33 36 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
3 9 A W E +A 16 0A 99 36 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
4 10 A E E -A 15 0A 119 36 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
5 11 A I E +A 14 0A 116 36 11 IIIIIIIIIIIIIIIIIIIIIIIIIVIIIIIMIIL
6 12 A I E -A 13 0A 80 36 13 IIIIIIIIIIIIIIIIIIVLVIVVVVVIIIIIIII
7 13 A H E +A 12 0A 130 36 34 HHHHHHHHHHHHHHHHHHHQFQHHHHHHHHHQYFH
8 14 A E S S- 0 0 112 36 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 15 A N S S- 0 0 144 36 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
10 16 A G S S+ 0 0 53 36 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
11 17 A R S S- 0 0 189 36 23 RRRRRRRRRRRRRRRRRKKRRRKKKKQRRRRRRRK
12 18 A P E +A 7 0A 85 36 8 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRP
13 19 A L E -A 6 0A 23 36 24 LLLLLLLLLLLLLLLLMVMVMMMMMMMMMMVMILV
14 20 A Y E -AB 5 23A 98 36 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFY
15 21 A Y E -AB 4 22A 108 36 1 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFY
16 22 A N E > +AB 3 21A 1 36 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
17 23 A A T 5S+ 0 0 42 36 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 24 A E T 5S+ 0 0 146 36 39 EEEEEEEEEEEEEEEEQQQKEQQQQQQQQQQQQEQ
19 25 A Q T 5S- 0 0 149 36 72 QQQQQQQQQQQQQQQQLQQQKQLLLKLRRRRERRR
20 26 A K T 5 + 0 0 180 36 51 KKKKKKKKKKKKKKKKKQKQKKKKKKQQQQQHQEQ
21 27 A T E < -B 16 0A 47 36 57 TTTTTTTTTTTTTTTTTTTTTRTTTTTIIIIRIII
22 28 A K E +B 15 0A 106 36 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
23 29 A L E -B 14 0A 60 36 44 LLLLLLLLLLLLLLLLLLLLLLLLLLLRRRQLLLQ
24 30 A H S S+ 0 0 116 36 77 HHHHHHHHHHHHHHHHHHHHLSHHHHRVLVAANTS
25 31 A Y S S- 0 0 146 36 100 YYYYYYYYYYYYYYYYNHQYYEQQQTHDDDNEEEV
26 32 A P 0 0 75 36 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
27 33 A P 0 0 173 36 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 7 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 28 0 0 0.000 0 1.00
2 8 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
3 9 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
4 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 36 0 0 0.000 0 1.00
5 11 A 3 3 92 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.378 12 0.89
6 12 A 19 3 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.613 20 0.87
7 13 A 0 0 0 0 6 0 3 0 0 0 0 0 0 83 0 0 8 0 0 0 36 0 0 0.619 20 0.66
8 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 36 0 0 0.000 0 1.00
9 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 36 0 0 0.000 0 1.00
10 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
11 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 19 3 0 0 0 36 0 0 0.613 20 0.76
12 18 A 0 0 0 0 0 0 0 0 0 97 0 0 0 0 3 0 0 0 0 0 36 0 0 0.127 4 0.92
13 19 A 11 50 3 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 1.058 35 0.76
14 20 A 0 0 0 0 3 0 97 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.127 4 0.99
15 21 A 0 0 0 0 6 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.215 7 0.99
16 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 36 0 0 0.000 0 1.00
17 23 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
18 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 44 53 0 0 36 0 0 0.797 26 0.61
19 25 A 0 14 0 0 0 0 0 0 0 0 0 0 0 0 19 6 58 3 0 0 36 0 0 1.167 38 0.28
20 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 69 25 3 0 0 36 0 0 0.799 26 0.49
21 27 A 0 0 19 0 0 0 0 0 0 0 0 75 0 0 6 0 0 0 0 0 36 0 0 0.695 23 0.42
22 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 36 0 0 0.000 0 1.00
23 29 A 0 86 0 0 0 0 0 0 0 0 0 0 0 0 8 0 6 0 0 0 36 0 0 0.496 16 0.55
24 30 A 6 6 0 0 0 0 0 0 6 0 6 3 0 69 3 0 0 0 3 0 36 0 0 1.194 39 0.23
25 31 A 3 0 0 0 0 0 53 0 0 0 0 3 0 6 0 0 11 11 6 8 36 0 0 1.553 51 -0.01
26 32 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
27 33 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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