Complet list of 1dsv hssp file
Complete list of 1dsv.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1DSV
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-12
HEADER VIRAL PROTEIN 08-JAN-00 1DSV
COMPND MOL_ID: 1; MOLECULE: NUCLEIC ACID BINDING PROTEIN P14; CHAIN: A; FRAGM
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MOUSE MAMMARY TUMOR VIRUS; ORGANISM_TA
AUTHOR D.J.KLEIN,P.E.JOHNSON,E.S.ZOLLARS,R.N.DE GUZMAN,M.F.SUMMERS
DBREF 1DSV A 54 84 UNP P11284 GAG_MMTVC 550 580
SEQLENGTH 31
NCHAIN 1 chain(s) in 1DSV data set
NALIGN 92
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : GAG_MMTVB 1.00 1.00 1 31 550 580 31 0 0 591 P10258 Gag polyprotein OS=Mouse mammary tumor virus (strain BR6) GN=gag PE=3 SV=3
2 : GAG_MMTVC 1DSQ 1.00 1.00 1 31 550 580 31 0 0 591 P11284 Gag polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag PE=1 SV=3
3 : O56220_MMTV 1.00 1.00 1 31 550 580 31 0 0 1755 O56220 Pr160 OS=Mouse mammary tumor virus GN=gag-pro-pol PE=4 SV=2
4 : O92804_MMTV 1.00 1.00 1 31 550 580 31 0 0 860 O92804 Pr110 OS=Mouse mammary tumor virus GN=gag-pro PE=4 SV=2
5 : POL_MMTVC 1.00 1.00 1 31 550 580 31 0 0 1755 P11283 Gag-Pro-Pol polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro-pol PE=1 SV=2
6 : PRO_MMTVC 1.00 1.00 1 31 550 580 31 0 0 860 Q9IZT2 Gag-Pro polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro PE=1 SV=1
7 : Q83391_MMTV 1.00 1.00 1 31 550 580 31 0 0 591 Q83391 Gag pro pol polyprotein OS=Mouse mammary tumor virus GN=gag pro pol PE=4 SV=1
8 : Q9WJP5_MMTV 1.00 1.00 1 31 550 580 31 0 0 591 Q9WJP5 Pr77 OS=Mouse mammary tumor virus GN=gag PE=4 SV=2
9 : K9W7J4_MMTV 0.97 1.00 1 31 146 176 31 0 0 187 K9W7J4 Gag (Fragment) OS=Human betaretrovirus PE=4 SV=1
10 : Q7SPW6_MMTV 0.97 1.00 1 31 146 176 31 0 0 187 Q7SPW6 Gag (Fragment) OS=Human betaretrovirus PE=4 SV=1
11 : Q99J11_MOUSE 0.97 1.00 1 31 363 393 31 0 0 404 Q99J11 BC005685 protein (Fragment) OS=Mus musculus GN=BC005685 PE=2 SV=1
12 : Q9IZT6_MMTV 0.97 1.00 1 31 550 580 31 0 0 591 Q9IZT6 Gag OS=Exogenous mouse mammary tumor virus GN=gag PE=4 SV=1
13 : Q9IZT7_MMTV 0.97 1.00 1 31 550 580 31 0 0 860 Q9IZT7 Gag-Pro OS=Exogenous mouse mammary tumor virus GN=gag-pro PE=4 SV=1
14 : Q9IZT8_MMTV 0.97 1.00 1 31 550 580 31 0 0 1755 Q9IZT8 Gag-Pro-Pol OS=Exogenous mouse mammary tumor virus GN=gag-pro-pol PE=4 SV=1
15 : Q9IZU1_MMTV 0.97 1.00 1 31 550 580 31 0 0 591 Q9IZU1 Gag OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag PE=4 SV=1
16 : Q9IZU2_MMTV 0.97 1.00 1 31 550 580 31 0 0 860 Q9IZU2 Gag-Pro OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag-pro PE=4 SV=1
17 : Q9IZU3_MMTV 0.97 1.00 1 31 550 580 31 0 0 1755 Q9IZU3 Gag-Pro-Pol OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag-pro-pol PE=4 SV=1
18 : Q9HBF6_9BETR 0.94 1.00 1 31 287 317 31 0 0 328 Q9HBF6 Gag-pro-pol protein (Fragment) OS=Human mammary tumor virus PE=4 SV=1
19 : GAG_SRV2 0.77 0.87 2 31 572 601 30 0 0 654 P51516 Gag polyprotein OS=Simian retrovirus SRV-2 GN=gag PE=3 SV=3
20 : Q9WQ02_SRV2 0.77 0.87 2 31 572 601 30 0 0 654 Q9WQ02 Gag protein OS=Simian retrovirus SRV-2 GN=gag PE=4 SV=1
21 : Q9WQ06_SRV2 0.77 0.87 2 31 572 601 30 0 0 654 Q9WQ06 Gag protein OS=Simian retrovirus SRV-2 GN=gag PE=4 SV=1
22 : Q4JNY4_HUMAN 0.76 0.93 1 29 578 606 29 0 0 668 Q4JNY4 Gag (Fragment) OS=Homo sapiens GN=gag PE=4 SV=1
23 : E0WCK6_9BETR 0.74 0.84 1 31 576 606 31 0 0 659 E0WCK6 Gag protein OS=Simian retrovirus 4 GN=gag PE=4 SV=1
24 : GAG_SRV1 2F76 0.74 0.87 1 31 575 605 31 0 0 658 P04022 Gag polyprotein OS=Simian retrovirus SRV-1 GN=gag PE=1 SV=3
25 : Q5H872_MPMV 0.74 0.84 1 31 576 606 31 0 0 659 Q5H872 Gag OS=Simian type D retrovirus -Tsukuba GN=gag PE=4 SV=1
26 : F8VBW4_MPMV 0.73 0.87 2 31 576 605 30 0 0 658 F8VBW4 Gag protein OS=Simian endogenous retrovirus vero ATCC CCL-81 PE=2 SV=1
27 : GAG_MPMV 2LPY 0.73 0.90 2 31 575 604 30 0 0 657 P07567 Gag polyprotein OS=Mason-Pfizer monkey virus GN=gag PE=1 SV=3
28 : GAK10_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P87889 HERV-K_5q33.3 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=4
29 : GAK11_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P63145 HERV-K_22q11.21 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
30 : GAK12_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P63130 HERV-K_1q22 provirus ancestral Gag polyprotein OS=Homo sapiens PE=3 SV=2
31 : GAK1_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P62683 HERV-K_12q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
32 : GAK2_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 Q7LDI9 HERV-K_7p22.1 provirus ancestral Gag polyprotein OS=Homo sapiens GN=ERVK6 PE=1 SV=3
33 : GAK3_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 Q9YNA8 HERV-K_19q12 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=3
34 : GAK4_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P63126 HERV-K_6q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
35 : GAK5_HUMAN 0.73 0.93 1 30 578 607 30 0 0 666 P62684 HERV-K_19p13.11 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
36 : GAK6_HUMAN 0.73 0.93 1 30 578 607 30 0 0 647 P62685 HERV-K_8p23.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
37 : L0MXX7_9RETR 0.73 0.87 2 31 578 607 30 0 0 660 L0MXX7 Gag protein OS=Simian retrovirus Y GN=gag PE=4 SV=1
38 : M3ZBN2_NOMLE 0.73 0.90 1 30 473 502 30 0 0 561 M3ZBN2 Uncharacterized protein OS=Nomascus leucogenys PE=4 SV=1
39 : O41288_MPMV 0.73 0.87 2 31 576 605 30 0 0 658 O41288 Gag protein OS=Simian endogenous retrovirus GN=gag PE=4 SV=1
40 : O56224_MPMV 0.73 0.90 2 31 575 604 30 0 0 1771 O56224 RT-IN OS=Mason-Pfizer monkey virus GN=gag-pro-pol PE=4 SV=2
41 : O56225_MPMV 2F76 0.73 0.90 2 31 575 604 30 0 0 657 O56225 Pr78 OS=Mason-Pfizer monkey virus GN=gag PE=1 SV=2
42 : O92810_MPMV 3TTA 0.73 0.90 2 31 575 604 30 0 0 911 O92810 Pr95 OS=Mason-Pfizer monkey virus GN=gag-pro PE=1 SV=2
43 : POK4_HUMAN 0.73 0.93 1 30 578 607 30 0 0 1117 P63128 HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein OS=Homo sapiens PE=3 SV=3
44 : Q96897_9RETR 0.73 0.90 1 30 578 607 30 0 0 666 Q96897 Gag protein OS=Human endogenous retrovirus K GN=gag PE=4 SV=1
45 : Q9IWX3_9RETR 0.73 0.90 2 31 159 188 30 0 0 208 Q9IWX3 Gag protein (Fragment) OS=Simian retrovirus 5 GN=gag PE=2 SV=1
46 : V9H0H3_HUMAN 0.73 0.93 1 30 578 607 30 0 0 2294 V9H0H3 Gag-Pro-Pol-Env protein OS=Homo sapiens PE=4 SV=1
47 : P87891_9RETR 0.72 0.93 2 30 339 367 29 0 0 426 P87891 Gag protein (Fragment) OS=Human endogenous retrovirus K GN=gag PE=4 SV=1
48 : I6QQE1_MACFA 0.70 0.93 1 30 607 636 30 0 0 695 I6QQE1 Gag protein OS=Macaca fascicularis GN=gag PE=4 SV=1
49 : A9LHI8_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHI8 Gag OS=Ovis aries GN=gag PE=4 SV=1
50 : A9LHJ3_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHJ3 Gag OS=Ovis aries GN=gag PE=4 SV=1
51 : A9LHJ8_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHJ8 Gag OS=Ovis aries GN=gag PE=4 SV=1
52 : A9LHL3_SHEEP 0.68 0.74 1 31 536 566 31 0 0 616 A9LHL3 Gag OS=Ovis aries GN=gag PE=4 SV=1
53 : A9LHM8_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHM8 Gag OS=Ovis aries GN=gag PE=4 SV=1
54 : A9LHN2_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHN2 Gag OS=Ovis aries GN=gag PE=4 SV=1
55 : A9LHN7_SHEEP 0.68 0.77 1 31 535 565 31 0 0 615 A9LHN7 Gag OS=Ovis aries GN=gag PE=4 SV=1
56 : A9LHP4_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 A9LHP4 Gag OS=Ovis aries GN=gag PE=4 SV=1
57 : D3GGN4_9BETR 0.68 0.77 1 31 534 564 31 0 0 614 D3GGN4 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
58 : D3GGN8_9BETR 0.68 0.77 1 31 533 563 31 0 0 613 D3GGN8 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
59 : D3GGP6_9BETR 0.68 0.77 1 31 533 563 31 0 0 613 D3GGP6 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
60 : D9I3F2_9BETR 0.68 0.77 1 31 532 562 31 0 0 612 D9I3F2 Gag protein OS=Enzootic nasal tumour virus of goats GN=gag PE=4 SV=1
61 : D9YZJ3_9BETR 0.68 0.77 1 31 533 563 31 0 0 613 D9YZJ3 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
62 : D9YZK1_9BETR 0.68 0.77 1 31 534 564 31 0 0 614 D9YZK1 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
63 : GAG_JSRV 2V4X 0.68 0.77 1 31 532 562 31 0 0 612 P31622 Gag polyprotein OS=Sheep pulmonary adenomatosis virus GN=gag PE=1 SV=1
64 : L8IFS6_9CETA 0.68 0.89 2 29 477 504 28 0 0 516 L8IFS6 HERV-K_6q14.1 provirus ancestral Gag polyprotein (Fragment) OS=Bos mutus GN=M91_10198 PE=4 SV=1
65 : Q09PL2_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 Q09PL2 Gag protein OS=Ovis aries GN=gag PE=4 SV=1
66 : Q7SMF1_9BETR 0.68 0.77 1 31 532 562 31 0 0 612 Q7SMF1 Gag protein OS=Enzootic nasal tumour virus of goats PE=4 SV=1
67 : Q95N68_JSRV 0.68 0.77 1 31 531 561 31 0 0 611 Q95N68 Gag protein OS=Sheep pulmonary adenomatosis virus GN=gag PE=4 SV=1
68 : Q9N1S0_SHEEP 0.68 0.74 1 31 536 566 31 0 0 616 Q9N1S0 Gag OS=Ovis aries GN=gag PE=4 SV=1
69 : Q9TTD5_SHEEP 0.68 0.77 1 31 536 566 31 0 0 616 Q9TTD5 Gag OS=Ovis aries GN=gag PE=4 SV=1
70 : Q9WR75_JSRV 0.68 0.77 1 31 531 561 31 0 0 611 Q9WR75 Gag OS=Sheep pulmonary adenomatosis virus GN=gag PE=4 SV=1
71 : S4VD46_9BETR 0.68 0.77 1 31 533 563 31 0 0 613 S4VD46 Gag OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
72 : GAK8_HUMAN 0.67 0.87 1 30 578 607 30 0 0 667 Q9HDB9 HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens GN=ERVK-5 PE=1 SV=3
73 : A9LHM7_SHEEP 0.65 0.71 1 31 536 566 31 0 0 616 A9LHM7 Gag OS=Ovis aries GN=gag PE=4 SV=1
74 : Q9WJ20_9BETR 0.65 0.74 1 31 533 563 31 0 0 613 Q9WJ20 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
75 : GAG_SMRVH 0.64 0.92 5 29 649 673 25 0 0 740 P21411 Gag polyprotein OS=Squirrel monkey retrovirus GN=gag PE=3 SV=3
76 : Q60505_9RODE 0.64 0.68 4 31 486 513 28 0 0 567 Q60505 Chinese hamster provirus OS=Cricetulus sp. PE=4 SV=1
77 : Q866Y8_RABIT 0.64 0.75 2 29 63 90 28 0 0 149 Q866Y8 Gag protein (Fragment) OS=Oryctolagus cuniculus PE=4 SV=1
78 : A8BDN3_BOVIN 0.63 0.93 2 31 469 498 30 0 0 507 A8BDN3 Gag protein OS=Bos taurus GN=gag PE=4 SV=1
79 : Q8NFP3_HUMAN 0.63 0.78 2 28 539 565 27 0 0 622 Q8NFP3 Gag protein OS=Homo sapiens PE=4 SV=1
80 : M3WTA7_FELCA 0.62 0.86 1 29 127 155 29 0 0 1047 M3WTA7 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
81 : A9LHM0_SHEEP 0.61 0.71 1 31 536 566 31 0 0 616 A9LHM0 Gag OS=Ovis aries GN=gag PE=4 SV=1
82 : M3WSX7_FELCA 0.59 0.86 1 29 518 546 29 0 0 800 M3WSX7 Uncharacterized protein OS=Felis catus PE=4 SV=1
83 : M3Z829_MUSPF 0.59 0.83 1 29 532 560 29 0 0 607 M3Z829 Uncharacterized protein OS=Mustela putorius furo PE=4 SV=1
84 : Q88189_SMRVH 0.59 0.83 1 29 303 331 29 0 0 393 Q88189 Gag protein (Fragment) OS=Squirrel monkey retrovirus GN=gag PE=2 SV=1
85 : M3X044_FELCA 0.58 0.87 1 31 518 548 31 0 0 557 M3X044 Uncharacterized protein OS=Felis catus PE=4 SV=1
86 : U3KLZ9_RABIT 0.58 0.77 1 31 409 439 31 0 0 501 U3KLZ9 Uncharacterized protein (Fragment) OS=Oryctolagus cuniculus PE=4 SV=1
87 : G3H3Y2_CRIGR 0.57 0.75 2 29 399 426 28 0 0 493 G3H3Y2 Retrovirus-related Gag polyprotein OS=Cricetulus griseus GN=I79_004974 PE=4 SV=1
88 : U3KK43_FICAL 0.55 0.72 1 29 518 546 29 0 0 557 U3KK43 Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1
89 : Q9N174_TRIVU 0.52 0.74 1 31 630 660 31 0 0 708 Q9N174 Gag polyprotein OS=Trichosurus vulpecula GN=gag PE=4 SV=1
90 : Q7M6U4_MOUSE 0.50 0.63 1 30 495 524 30 0 0 576 Q7M6U4 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
91 : Q7M6W5_MOUSE 0.50 0.63 1 30 495 524 30 0 0 576 Q7M6W5 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
92 : Q7M6W6_MOUSE 0.50 0.63 1 30 495 524 30 0 0 545 Q7M6W6 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 54 A P 0 0 149 74 54 PPPPPPPPPPPPPPPPPP PTAT PPPPPPPPP P PP P PTTTTTTTTTTTTTTT TTTTTT
2 55 A P + 0 0 135 91 30 PPPPPPPPSSSSSSSSSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPP
3 56 A G - 0 0 33 91 57 GGGGGGGGGGGGGGGGGGGGGDGGGGGDDDDDDDDDGGGGGGDDGDDGNNNNNNNNNNNNNNNSNNNNNN
4 57 A L B -A 12 0A 76 92 26 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLLL
5 58 A C > - 0 0 0 93 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 59 A P T 4 S+ 0 0 83 93 5 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
7 60 A R T 4 S+ 0 0 137 93 5 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRRRR
8 61 A C T 4 S- 0 0 6 93 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
9 62 A K < + 0 0 135 93 32 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
10 63 A K S S- 0 0 164 93 19 KKKKKKKKKKKKKKKKKKRRRKRRRRRKKKKKKKKKRKRRRRKKRKKKKKKKKKKKKKKKKKKKKKKKKK
11 64 A G S S- 0 0 20 93 9 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
12 65 A Y B S+A 4 0A 151 93 84 YYYYYYYYYYYYYYYYYYKKKKKKKRKKKKKKKKKKKKRKKKKKKKKKKKKKKTKKKKKKKKKNKKKKKK
13 66 A H S S- 0 0 29 93 2 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
14 67 A W > - 0 0 171 93 6 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
15 68 A K T >4 S+ 0 0 140 93 51 KKKKKKKKKKKKKKKKKNAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA
16 69 A S T 34 S+ 0 0 114 93 69 SSSSSSSSSSSSSSSSSSNNNSNNNNNSSSSSSSSSNNNNNNSSNSSNRRRRRRRRRRRRRRRNRRRRRR
17 70 A E T 34 S+ 0 0 133 93 35 EEEEEEEEEEEEEEEEEEEEEQEEEEEQQQQQQQQQEQEEEEQLEQQQDDDDDDDDDDDDDDDQDDDDDD
18 71 A C << + 0 0 18 93 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
19 72 A K + 0 0 182 93 38 KKKKKKKKKKKKKKKKKKKKKRKKKKKRRRRRRRRRKHKKKKRRKRRRRRRHRRRRRRRRRRRRRRRHRR
20 73 A S - 0 0 38 93 21 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
21 74 A K S S+ 0 0 176 93 14 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
22 75 A F E -B 28 0B 107 93 80 FFFFFFFFFFFFFFFFFFTTTFTTTTTFFFFFFFFFTFTTTTFFTFFFTTTTTTTTTTTTTTTFTTTTTT
23 76 A D E >> -B 27 0B 15 93 21 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDHDDDDDD
24 77 A K G >4 S+ 0 0 151 93 82 KKKKKKKKKKKKKKKKKKSSSKSSSSNKKKKKKKKKSKSNNNKKNKKKVVVVVVVVVVVVVVVKVVVVVV
25 78 A D G 34 S- 0 0 124 93 64 DDDDDDDDDDDDDDDDDDQQQNQQQQQNNNNNNNNNQNQQQQNNQNNNQQQQQQQQQQQQQQQDQQQQQQ
26 79 A G G <4 S+ 0 0 49 93 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27 80 A N E << -B 23 0B 65 93 49 NNNNNNNNNNNNNNNNNNNNNQNNNNNQQQQQQQQQNQNNNNQQNQQQNNNNNNNNNNNNNNNTNNNNNN
28 81 A P E -B 22 0B 87 93 9 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
29 82 A L - 0 0 33 92 14 LLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLLLLLLLIIILLLLLLLLLLLLLLLLLLLLLLLLLLLL
30 83 A P 0 0 92 82 35 PPPPPPPPPPPPPPPPPPPPP PPPSPSSSSSSSSSPSSPPPSSPSSSPPPPPPPPPPPPPPP PPPPPP
31 84 A P 0 0 179 63 0 PPPPPPPPPPPPPPPPPPPPP PPPPP P PPPP P PPPPPPPPPPPPPPP PPPPPP
## ALIGNMENTS 71 - 92
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 54 A P 0 0 149 74 54 TPTT PTPPPPP PPGGG
2 55 A P + 0 0 135 91 30 PSPP PPPAPAPTASPSAPPP
3 56 A G - 0 0 33 91 57 NGNN GGGTNILTITGGTGGG
4 57 A L B -A 12 0A 76 92 26 LLLL LLVLILILKIPLSPIII
5 58 A C > - 0 0 0 93 2 CCFCCCCCCCCCCCCCCCCCCC
6 59 A P T 4 S+ 0 0 83 93 5 PPPPPRPPPPPPPPPPPRPPPP
7 60 A R T 4 S+ 0 0 137 93 5 RKRRRRRKRRRRKRRRRRRRRR
8 61 A C T 4 S- 0 0 6 93 2 CCCCCCCCCCRCCCCCCCCCCC
9 62 A K < + 0 0 135 93 32 KGKKKGRKRRKRQKRHRQRGGG
10 63 A K S S- 0 0 164 93 19 KKKKKKRRRRKRRKRRKKKKKK
11 64 A G S S- 0 0 20 93 9 GGGGGGGGGGGGGGGGGFRGGG
12 65 A Y B S+A 4 0A 151 93 84 KKRKFYNFNYKYYFYYNGFRRR
13 66 A H S S- 0 0 29 93 2 HHHHHHHHHHLHHHHHHHHHHH
14 67 A W > - 0 0 171 93 6 WWWWWRWWWWWWWWWWWGWWWW
15 68 A K T >4 S+ 0 0 140 93 51 AAAAAAVLVVAVAAVAAAGAAA
16 69 A S T 34 S+ 0 0 114 93 69 RNRRSSSNSNRNNSNNKWNKKK
17 70 A E T 34 S+ 0 0 133 93 35 DQDDEEEEEEDEEEEEDETDDD
18 71 A C << + 0 0 18 93 0 CCCCCCCCCCCCCCCCCCCCCC
19 72 A K + 0 0 182 93 38 RHHRRKYRYRRRRRRRRRRKKK
20 73 A S - 0 0 38 93 21 SSSSSSFSFSSSSSSSSSAHHH
21 74 A K S S+ 0 0 176 93 14 KKKKRVKKKKKKQRKKVKTKKK
22 75 A F E -B 28 0B 107 93 80 TFTTLRMFITTTKLTTKFHTTT
23 76 A D E >> -B 27 0B 15 93 21 DDDDDDNNNDDDDDDNDRDRRR
24 77 A K G >4 S+ 0 0 151 93 82 VKVVIISKSCVSKIRSIKIVVV
25 78 A D G 34 S- 0 0 124 93 64 QDQQNKADANQNFNNSSDDLLL
26 79 A G G <4 S+ 0 0 49 93 6 GGGGGGGGGGGGGGGGGGGSSS
27 80 A N E << -B 23 0B 65 93 49 NQNTQRNNNNNKNQKQQSKRRR
28 81 A P E -B 22 0B 87 93 9 PPPPPLPAPPPPIPPPPPPPPP
29 82 A L - 0 0 33 92 14 LLLLILLF LLLIILLFILVVV
30 83 A P 0 0 92 82 35 PSPP P T P QP PPPP
31 84 A P 0 0 179 63 0 P PP P P P PP P
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 54 A 0 0 0 0 0 0 0 4 1 58 0 36 0 0 0 0 0 0 0 0 74 0 0 0.871 29 0.45
2 55 A 0 0 0 0 0 0 0 0 4 79 15 1 0 0 0 0 0 0 0 0 91 0 0 0.660 22 0.69
3 56 A 0 1 2 0 0 0 0 48 0 0 1 4 0 0 0 0 0 0 27 15 91 0 0 1.315 43 0.42
4 57 A 3 86 7 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 92 0 0 0.602 20 0.73
5 58 A 0 0 0 0 1 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 93 0 0 0.059 1 0.98
6 59 A 0 0 0 0 0 0 0 0 0 98 0 0 0 0 2 0 0 0 0 0 93 0 0 0.104 3 0.95
7 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 4 0 0 0 0 93 0 0 0.177 5 0.95
8 61 A 0 0 0 0 0 0 0 0 0 0 0 0 99 0 1 0 0 0 0 0 93 0 0 0.059 1 0.97
9 62 A 0 0 0 0 0 0 0 5 0 0 0 0 0 1 8 84 2 0 0 0 93 0 0 0.631 21 0.68
10 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 76 0 0 0 0 93 0 0 0.547 18 0.80
11 64 A 0 0 0 0 1 0 0 98 0 0 0 0 0 0 1 0 0 0 0 0 93 0 0 0.119 3 0.91
12 65 A 0 0 0 0 4 0 27 1 0 0 0 1 0 0 6 56 0 0 4 0 93 0 0 1.223 40 0.15
13 66 A 0 1 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 93 0 0 0.059 1 0.97
14 67 A 0 0 0 0 0 98 0 1 0 0 0 0 0 0 1 0 0 0 0 0 93 0 0 0.119 3 0.94
15 68 A 5 1 0 0 0 0 0 3 70 0 0 0 0 0 0 19 0 0 1 0 93 0 0 0.934 31 0.48
16 69 A 0 0 0 0 0 1 0 0 0 0 41 0 0 0 27 4 0 0 27 0 93 0 0 1.256 41 0.31
17 70 A 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 18 48 0 31 93 0 0 1.123 37 0.64
18 71 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 93 0 0 0.000 0 1.00
19 72 A 0 0 0 0 0 0 2 0 0 0 0 0 0 5 53 40 0 0 0 0 93 0 0 0.944 31 0.61
20 73 A 0 0 0 0 2 0 0 0 1 0 94 0 0 3 0 0 0 0 0 0 93 0 0 0.304 10 0.79
21 74 A 2 0 0 0 0 0 0 0 0 0 0 1 0 0 2 94 1 0 0 0 93 0 0 0.325 10 0.85
22 75 A 0 2 1 1 42 0 0 0 0 0 0 49 0 1 1 2 0 0 0 0 93 0 0 1.073 35 0.19
23 76 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 4 90 93 0 0 0.411 13 0.79
24 77 A 30 0 5 0 0 0 0 0 0 0 14 0 1 0 1 43 0 0 5 0 93 0 0 1.411 47 0.18
25 78 A 0 3 0 0 1 0 0 0 2 0 2 0 0 0 0 1 42 0 23 26 93 0 0 1.423 47 0.35
26 79 A 0 0 0 0 0 0 0 97 0 0 3 0 0 0 0 0 0 0 0 0 93 0 0 0.143 4 0.94
27 80 A 0 0 0 0 0 0 0 0 0 0 1 2 0 0 4 3 23 0 67 0 93 0 0 0.984 32 0.50
28 81 A 0 1 1 0 0 0 0 0 1 97 0 0 0 0 0 0 0 0 0 0 93 0 0 0.178 5 0.91
29 82 A 3 86 9 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92 0 0 0.538 17 0.86
30 83 A 0 0 0 0 0 0 0 0 0 76 22 1 0 0 0 0 1 0 0 0 82 0 0 0.652 21 0.64
31 84 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 63 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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