Complet list of 1dl0 hssp file
Complete list of 1dl0.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1DL0
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-12
HEADER TOXIN 08-DEC-99 1DL0
COMPND MOL_ID: 1; MOLECULE: J-ATRACOTOXIN-HV1C; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURAL
AUTHOR X.H.WANG,G.F.KING
DBREF 1DL0 A 1 37 UNP P82228 TJT1C_HADVE 1 37
SEQLENGTH 37
NCHAIN 1 chain(s) in 1DL0 data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TJT1C_HADVE 1DL0 1.00 1.00 1 37 1 37 37 0 0 37 P82228 Kappa-hexatoxin-Hv1c OS=Hadronyche versuta PE=1 SV=1
2 : S0F1P1_HADVE 0.97 0.97 2 37 39 74 36 0 0 74 S0F1P1 Kappa-hexatoxin-Hv1d insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
3 : S0F1M9_HADVE 0.95 0.95 1 37 38 74 37 0 0 74 S0F1M9 Kappa-hexatoxin-Hv1e insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
4 : TJT1A_HADFO 0.83 0.94 1 35 2 37 36 1 1 37 P0C2L8 Kappa-hexatoxin-Hf1a OS=Hadronyche formidabilis PE=1 SV=1
5 : TJT1B_HADVE 0.83 0.97 1 35 1 36 36 1 1 36 P82226 Kappa-hexatoxin-Hv1b OS=Hadronyche versuta PE=1 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 151 5 64 A APT
2 2 A I - 0 0 142 6 38 IIITI
3 3 A a - 0 0 40 6 0 CCCCC
4 4 A T - 0 0 35 6 29 TTPTT
5 5 A G > - 0 0 13 6 0 GGGGG
6 6 A A T 3 S+ 0 0 30 6 0 AAAAA
7 7 A D T 3 S+ 0 0 103 6 0 DDDDD
8 8 A R S < S- 0 0 150 6 25 RSRRR
9 9 A P B -A 31 0A 65 6 0 PPPPP
10 10 A b - 0 0 32 6 0 CCCCC
11 11 A A - 0 0 49 6 0 AAAAA
12 12 A A S S+ 0 0 112 6 0 AAAAA
13 13 A c S S+ 0 0 103 6 0 CCCCC
14 14 A c - 0 0 34 6 0 CCCCC
15 15 A P - 0 0 94 6 0 PPPPP
16 16 A d - 0 0 16 6 0 CCCCC
17 17 A a > - 0 0 29 6 0 CCCCC
18 18 A P T 3 S+ 0 0 133 6 0 PPPPP
19 19 A G T 3 S+ 0 0 45 6 0 GGGGG
20 20 A T E < -B 34 0A 24 6 0 TTTTT
21 21 A S E -B 33 0A 43 6 0 SSSSS
22 22 A b E +B 32 0A 65 6 0 CCCCC
23 23 A K E -B 31 0A 69 6 32 KKKKQ
24 24 A A E -B 30 0A 71 6 42 AAAgg
25 25 A E > - 0 0 113 6 0 EEEee
26 26 A S T 3 S+ 0 0 122 6 58 SSSPP
27 27 A N T 3 S- 0 0 98 6 0 NNNNN
28 28 A G S < S+ 0 0 63 6 0 GGGGG
29 29 A V - 0 0 66 6 0 VVVVV
30 30 A S E - B 0 24A 38 6 44 SSFSS
31 31 A Y E -AB 9 23A 82 6 0 YYYYY
32 32 A d E - B 0 22A 0 6 0 CCCCC
33 33 A R E - B 0 21A 103 6 0 RRRRR
34 34 A K E - B 0 20A 110 6 58 KKKNN
35 35 A D - 0 0 103 6 0 DDDDD
36 36 A E 0 0 164 4 0 EEE
37 37 A P 0 0 187 4 0 PPP
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 60 20 0 20 0 0 0 0 0 0 0 0 5 0 0 0.950 31 0.36
2 2 A 0 0 83 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.61
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 17 0 83 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.70
5 5 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 17 0 0 0 83 0 0 0 0 0 6 0 0 0.451 15 0.75
9 9 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 6 0 0 0.451 15 0.67
24 24 A 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 0 0 0 6 0 2 0.637 21 0.58
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.42
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
29 29 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
30 30 A 0 0 0 0 17 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.56
31 31 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 33 0 6 0 0 0.637 21 0.42
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
4 25 26 1 gPe
5 25 25 1 gPe
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