Complet list of 1df6 hssp file
Complete list of 1df6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1DF6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER PLANT PROTEIN 17-NOV-99 1DF6
COMPND MOL_ID: 1; MOLECULE: CYCLOVIOLACIN O1; CHAIN: A; OTHER_DETAILS: CYCLIC
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: VIOLA ODORATA; ORGANISM_TAXID: 97441;
AUTHOR D.J.CRAIK,N.L.DALY,T.BOND,C.WAINE
DBREF 1DF6 A 1 24 UNP P82230 CYO1_VIOOD 7 30
SEQLENGTH 30
NCHAIN 1 chain(s) in 1DF6 data set
NALIGN 115
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CYO1_VIOOD 1NBJ 1.00 1.00 1 24 7 30 24 0 0 30 P82230 Cycloviolacin-O1 OS=Viola odorata PE=1 SV=2
2 : CYH4_VIOHE 0.92 0.92 1 24 7 30 24 0 0 30 P85234 Cycloviolacin-H4 OS=Viola hederacea PE=1 SV=1
3 : VHR1_VIOHE 1VB8 0.92 0.96 1 24 7 30 24 0 0 30 P83937 Root cyclotide 1 OS=Viola hederacea PE=1 SV=2
4 : HYPAA_HYBPA 0.88 0.96 1 24 7 30 24 0 0 30 P58445 Cyclotide hypa-A OS=Hybanthus parviflorus PE=1 SV=1
5 : I0B6G2_9GENT 0.88 0.88 1 25 51 75 25 0 0 77 I0B6G2 Cyclotide chassatide C13 OS=Chassalia chartacea PE=4 SV=1
6 : CYCB_CLITE 0.83 0.91 1 23 7 29 23 0 0 31 P86842 Cyclotide cter-B OS=Clitoria ternatea PE=1 SV=2
7 : CYCC_CLITE 0.83 0.91 1 23 7 29 23 0 0 31 P86843 Cyclotide cter-C OS=Clitoria ternatea PE=1 SV=1
8 : CYCD_CLITE 0.83 0.91 1 23 7 29 23 0 0 31 P86844 Cyclotide cter-D OS=Clitoria ternatea PE=1 SV=1
9 : CYCE_CLITE 0.83 0.91 1 23 7 29 23 0 0 31 P86845 Cyclotide cter-E OS=Clitoria ternatea PE=1 SV=1
10 : G1CWI0_CLITE 0.83 0.91 1 23 36 58 23 0 0 135 G1CWI0 Cyclotide cter B OS=Clitoria ternatea PE=2 SV=1
11 : Q30CA1_9ROSI 0.83 0.96 1 24 4 27 24 0 0 33 Q30CA1 Cyclotide A (Fragment) OS=Hybanthus enneaspermus PE=2 SV=1
12 : CYCR_CLITE 0.79 0.96 1 24 7 30 24 0 0 31 P86903 Cyclotide cter-R OS=Clitoria ternatea PE=1 SV=1
13 : CYLA_PSYLO 0.79 0.96 1 24 7 30 24 0 0 31 P56872 Cyclopsychotride-A OS=Psychotria longipes PE=1 SV=2
14 : CYO18_VIOOD 0.79 0.88 1 24 7 30 24 0 0 30 P85181 Cycloviolacin-O18 OS=Viola odorata PE=1 SV=1
15 : KAB17_OLDAF 0.79 0.92 1 24 7 30 24 0 0 30 P85135 Kalata-B17 OS=Oldenlandia affinis PE=1 SV=1
16 : HYFLA_HYBFL 0.78 0.96 1 23 7 29 23 0 0 31 P84647 Cyclotide Hyfl-A OS=Hybanthus floribundus PE=1 SV=1
17 : B5B3Z0_9ROSI 0.77 0.96 1 26 91 116 26 0 0 120 B5B3Z0 Cyclotide 4b OS=Viola baoshanensis PE=2 SV=1
18 : B5B3Z1_9ROSI 0.77 0.92 1 26 91 116 26 0 0 120 B5B3Z1 Cyclotide 4c OS=Viola baoshanensis PE=2 SV=1
19 : CYVE_VIOBI 0.77 0.96 1 26 76 101 26 0 0 105 B1NRQ8 Cyclotide vibi-E (Fragment) OS=Viola biflora PE=1 SV=1
20 : D2WPL2_9ROSI 0.77 0.96 1 26 76 101 26 0 0 105 D2WPL2 Cyclotide E (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
21 : Q09PF9_9ROSI 0.77 0.92 1 26 91 116 26 0 0 120 Q09PF9 Cyclotide 4 OS=Viola baoshanensis PE=2 SV=1
22 : G1CWH5_CLITE 0.76 0.92 1 25 32 56 25 0 0 130 G1CWH5 Cyclotide cliotide T7 OS=Clitoria ternatea PE=2 SV=1
23 : I0B6F2_9GENT 0.76 0.84 1 25 51 75 25 0 0 77 I0B6F2 Cyclotide chassatide C2 OS=Chassalia chartacea PE=4 SV=1
24 : I0B6F7_9GENT 0.76 0.92 1 25 51 75 25 0 0 77 I0B6F7 Cyclotide chassatide C14 OS=Chassalia chartacea PE=4 SV=1
25 : I0B6F8_9GENT 0.76 0.92 1 25 51 75 25 0 0 77 I0B6F8 Cyclotide chassatide C15 OS=Chassalia chartacea PE=4 SV=1
26 : I0B6G1_9GENT 0.76 0.92 1 25 51 74 25 1 1 78 I0B6G1 Cyclotide chassatide C18 OS=Chassalia chartacea PE=4 SV=1
27 : I0B6G4_9GENT 0.76 0.92 1 25 51 75 25 0 0 77 I0B6G4 Cyclotide chassatide C16 OS=Chassalia chartacea PE=4 SV=1
28 : S5CLG2_9GENT 0.76 0.88 1 25 51 75 25 0 0 79 S5CLG2 Caripe 2 cyclotide (Fragment) OS=Carapichea ipecacuanha PE=2 SV=1
29 : S5CTC2_9GENT 0.76 0.88 1 25 51 75 25 0 0 82 S5CTC2 Caripe 2 cyclotide (Fragment) OS=Carapichea ipecacuanha PE=2 SV=1
30 : CYCK_PETHY 0.75 0.88 1 24 50 73 24 0 0 74 B3EWH6 Acyclotide phyb-K OS=Petunia hybrida PE=1 SV=1
31 : KAB16_OLDAF 0.75 0.92 1 24 7 30 24 0 0 30 P85134 Kalata-B16 OS=Oldenlandia affinis PE=1 SV=1
32 : D8WS39_OLDAF 0.74 0.96 1 23 109 130 23 1 1 141 D8WS39 Cyclotide Oak8 (Fragment) OS=Oldenlandia affinis GN=oak8 PE=2 SV=1
33 : CYO7_VIOOD 0.71 0.83 1 24 7 30 24 0 0 30 P58439 Cycloviolacin-O7 OS=Viola odorata PE=1 SV=1
34 : D8WS40_OLDAF 0.71 0.83 1 24 106 128 24 1 1 128 D8WS40 Cyclotide Oak9 (Fragment) OS=Oldenlandia affinis GN=oak9 PE=2 SV=1
35 : I0B6G0_9GENT 0.71 0.88 1 24 53 75 24 1 1 75 I0B6G0 Cyclotide chassatide C17 OS=Chassalia chartacea PE=4 SV=1
36 : CYH2_VIOHE 0.70 0.74 1 23 8 27 23 1 3 29 P85233 Cycloviolacin-H2 OS=Viola hederacea PE=1 SV=1
37 : CYVA_VIOCT 0.70 0.83 1 23 8 29 23 1 1 31 P84635 Cyclotide vico-A OS=Viola cotyledon PE=1 SV=1
38 : CYVB_VIOCT 0.70 0.87 1 23 8 29 23 1 1 31 P84636 Cyclotide vico-B OS=Viola cotyledon PE=1 SV=1
39 : D2WPL1_9ROSI 0.70 0.89 1 27 77 103 27 0 0 106 D2WPL1 Cyclotide E (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
40 : I0B6F4_9GENT 0.70 0.83 1 23 42 63 23 1 1 64 I0B6F4 Cyclotide chassatide C7 (Fragment) OS=Chassalia chartacea PE=2 SV=1
41 : PABR1_PALRI 0.70 0.87 1 23 9 30 23 1 1 32 B3EWF1 Parigidin-br1 OS=Palicourea rigida PE=1 SV=1
42 : Q09PG2_9ROSI 0.68 0.80 1 25 86 109 25 1 1 113 Q09PG2 Cyclotide 1 OS=Viola baoshanensis PE=4 SV=1
43 : CIRA_CHAPA 1BH4 0.67 0.79 1 24 7 29 24 1 1 30 P56871 Circulin-A OS=Chassalia parviflora PE=1 SV=2
44 : CYCK_CLITE 0.67 0.92 1 24 7 29 24 1 1 29 P86851 Cyclotide cter-K OS=Clitoria ternatea PE=1 SV=1
45 : CYCI_CLITE 0.65 0.87 1 23 8 29 23 1 1 31 P86849 Cyclotide cter-I OS=Clitoria ternatea PE=1 SV=1
46 : Q30C65_HYBFL 0.65 0.83 1 23 79 100 23 1 1 106 Q30C65 Cyclotide D (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
47 : Q30CB3_HYBFL 0.65 0.87 1 23 78 99 23 1 1 105 Q30CB3 Cyclotide K (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
48 : A9P3Q9_9ROSI 0.64 0.88 1 25 67 90 25 1 1 144 A9P3Q9 Cyclotide protein Mra16 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
49 : A9P3R0_9ROSI 0.64 0.88 1 25 67 90 25 1 1 144 A9P3R0 Cyclotide protein Mra17 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
50 : B5B3X9_9ROSI 0.64 0.80 1 25 86 109 25 1 1 113 B5B3X9 Cyclotide 1c OS=Viola baoshanensis PE=4 SV=1
51 : B5B3Y3_9ROSI 0.64 0.80 1 25 86 109 25 1 1 113 B5B3Y3 Cyclotide 2d OS=Viola baoshanensis PE=4 SV=1
52 : CIRB_CHAPA 2ERI 0.64 0.84 1 25 8 31 25 1 1 31 P56879 Circulin-B OS=Chassalia parviflora PE=1 SV=2
53 : CYCA_PETHY 0.64 0.80 1 25 50 73 25 1 1 79 B3EWH5 Cyclotide phyb-A OS=Petunia hybrida PE=1 SV=1
54 : CYCG_CLITE 0.64 0.88 1 25 7 30 25 1 1 30 P86847 Cyclotide cter-G OS=Clitoria ternatea PE=1 SV=1
55 : CYCH_CLITE 0.64 0.92 1 25 7 30 25 1 1 30 P86848 Cyclotide cter-H OS=Clitoria ternatea PE=1 SV=1
56 : D2WPK9_9ROSI 0.64 0.80 1 25 77 101 25 0 0 106 D2WPK9 Cyclotide D (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
57 : G1CWH7_CLITE 0.64 0.88 1 25 32 55 25 1 1 117 G1CWH7 Cyclotide cliotide T9 OS=Clitoria ternatea PE=4 SV=1
58 : I6S3T3_PETHY 0.64 0.80 1 25 50 73 25 1 1 79 I6S3T3 Cyclotide 1 OS=Petunia hybrida GN=PETUNITIDE1 PE=4 SV=1
59 : CIRF_CHAPA 0.62 0.79 1 24 7 29 24 1 1 29 P84644 Circulin-F OS=Chassalia parviflora PE=1 SV=1
60 : CYCL_CLITE 0.62 0.92 1 24 7 29 24 1 1 29 P86852 Cyclotide cter-L OS=Clitoria ternatea PE=1 SV=1
61 : I0B6F5_9GENT 0.62 0.88 1 24 53 75 24 1 1 75 I0B6F5 Cyclotide chassatide C8 OS=Chassalia chartacea PE=4 SV=1
62 : Q09PG0_9ROSI 0.62 0.88 1 26 89 113 26 1 1 115 Q09PG0 Cyclotide 3 OS=Viola baoshanensis PE=4 SV=1
63 : KAB5_OLDAF 2KUX 0.61 0.96 1 23 7 28 23 1 1 30 P58456 Kalata-B5 OS=Oldenlandia affinis PE=1 SV=2
64 : A9P3R6_9ROSI 0.60 0.84 1 25 68 91 25 1 1 95 A9P3R6 Cyclotide protein Mra23 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
65 : CYCJ_CLITE 0.60 0.84 1 25 8 31 25 1 1 31 P86850 Cyclotide cter-J OS=Clitoria ternatea PE=1 SV=1
66 : CYCP_CLITE 0.60 0.80 1 25 7 30 25 1 1 30 P86902 Cyclotide cter-P OS=Clitoria ternatea PE=1 SV=1
67 : CYH1_VIOHE 0.60 0.80 1 25 7 30 25 1 1 30 P58433 Cycloviolacin-H1 OS=Viola hederacea PE=1 SV=1
68 : CYO10_VIOOD 0.60 0.80 1 25 7 30 25 1 1 30 P58442 Cycloviolacin-O10 OS=Viola odorata PE=1 SV=1
69 : CYO17_VIOOD 0.60 0.76 1 25 7 30 25 1 1 30 P85180 Cycloviolacin-O17 OS=Viola odorata PE=1 SV=1
70 : CYVA_LEOCM 0.60 0.80 1 25 8 31 25 1 1 31 P84637 Cycloviolin-A OS=Leonia cymosa PE=1 SV=1
71 : CYVC_LEOCM 0.60 0.80 1 25 7 30 25 1 1 30 P84639 Cycloviolin-C OS=Leonia cymosa PE=1 SV=1
72 : CYVD_LEOCM 0.60 0.80 1 25 7 30 25 1 1 30 P84640 Cycloviolin-D OS=Leonia cymosa PE=1 SV=1
73 : CYVF_VIOBI 0.60 0.84 1 25 8 31 25 1 1 31 P85244 Cyclotide vibi-F OS=Viola biflora PE=1 SV=1
74 : CYVH_VIOBI 0.60 0.88 1 25 8 31 25 1 1 31 P85246 Cyclotide vibi-H OS=Viola biflora PE=1 SV=1
75 : D2WPK3_9ROSI 0.60 0.84 1 25 74 97 25 1 1 101 D2WPK3 Cyclotide F (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
76 : D2WPK4_9ROSI 0.60 0.76 1 25 77 100 25 1 1 104 D2WPK4 Cyclotide A (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
77 : D2WPK5_9ROSI 0.60 0.84 1 25 78 101 25 1 1 105 D2WPK5 Cyclotide B (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
78 : D2WPK7_9ROSI 0.60 0.84 1 25 75 98 25 1 1 102 D2WPK7 Cyclotide G (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
79 : D2WPL0_9ROSI 0.60 0.84 1 25 78 101 25 1 1 105 D2WPL0 Cyclotide B (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
80 : G1CWH3_CLITE 0.60 0.80 1 25 35 58 25 1 1 123 G1CWH3 Cyclotide cliotide T4 OS=Clitoria ternatea PE=2 SV=1
81 : Q09PG1_9ROSI 0.60 0.76 1 25 86 109 25 1 1 113 Q09PG1 Cyclotide 2 OS=Viola baoshanensis PE=4 SV=1
82 : K3ZBA8_SETIT 0.58 0.83 1 24 60 82 24 1 1 82 K3ZBA8 Uncharacterized protein OS=Setaria italica GN=Si023829m.g PE=4 SV=1
83 : B6E616_9ROSI 0.57 0.78 1 23 78 99 23 1 1 99 B6E616 Cyclotide protein Mra13 (Fragment) OS=Melicytus ramiflorus PE=4 SV=1
84 : CYCF_CLITE 0.57 0.91 1 23 7 28 23 1 1 30 P86846 Cyclotide cter-F OS=Clitoria ternatea PE=1 SV=1
85 : Q30CB2_HYBFL 0.57 0.87 1 23 78 99 23 1 1 105 Q30CB2 Cyclotide L (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
86 : A9P3Q6_9ROSI 0.56 0.84 1 25 66 89 25 1 1 94 A9P3Q6 Cyclotide protein Mra20 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
87 : A9P3Q7_9ROSI 0.56 0.84 1 25 64 87 25 1 1 92 A9P3Q7 Cyclotide protein Mra21 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
88 : B5B3Y0_9ROSI 0.56 0.72 1 25 86 109 25 1 1 113 B5B3Y0 Cyclotide 2a OS=Viola baoshanensis PE=4 SV=1
89 : B5B3Y6_9ROSI 0.56 0.76 1 25 89 112 25 1 1 116 B5B3Y6 Cyclotide 3b OS=Viola baoshanensis PE=4 SV=1
90 : CIRC_CHAPA 0.56 0.80 1 25 7 30 25 1 1 30 P84641 Circulin-C OS=Chassalia parviflora PE=1 SV=1
91 : CIRD_CHAPA 0.56 0.80 1 25 7 30 25 1 1 30 P84642 Circulin-D OS=Chassalia parviflora PE=1 SV=1
92 : CYCA_CLITE 0.56 0.84 1 25 8 31 25 1 1 31 P86841 Cyclotide cter-A OS=Clitoria ternatea PE=1 SV=1
93 : CYCO_CLITE 0.56 0.80 1 25 7 30 25 1 1 30 P86901 Cyclotide cter-O OS=Clitoria ternatea PE=1 SV=1
94 : CYCQ_CLITE 0.56 0.84 1 25 7 30 25 1 1 30 P86904 Cyclotide cter-Q OS=Clitoria ternatea PE=1 SV=1
95 : CYO11_VIOOD 0.56 0.84 1 25 92 115 25 1 1 118 P58443 Cycloviolacin-O11 OS=Viola odorata GN=Voc2 PE=1 SV=2
96 : CYO13_VIOOD 0.56 0.76 1 25 88 111 25 1 1 115 Q5USN8 Cycloviolacin-O13 OS=Viola odorata GN=Voc3 PE=1 SV=1
97 : CYO20_VIOOD 0.56 0.80 1 25 7 30 25 1 1 30 P85183 Cycloviolacin-O20 OS=Viola odorata PE=1 SV=1
98 : CYO3_VIOOD 0.56 0.76 1 25 7 30 25 1 1 30 P58435 Cycloviolacin-O3 OS=Viola odorata PE=1 SV=1
99 : CYO4_VIOOD 0.56 0.76 1 25 7 30 25 1 1 30 P58436 Cycloviolacin-O4 OS=Viola odorata PE=1 SV=2
100 : CYO5_VIOOD 0.56 0.80 1 25 7 30 25 1 1 30 P58437 Cycloviolacin-O5 OS=Viola odorata PE=1 SV=1
101 : CYO6_VIOOD 0.56 0.80 1 25 8 31 25 1 1 31 P58438 Cycloviolacin-O6 OS=Viola odorata PE=1 SV=1
102 : CYO9_VIOBI 0.56 0.76 1 25 76 99 25 1 1 103 B1NRR2 Cycloviolacin-O9 (Fragment) OS=Viola biflora PE=1 SV=1
103 : CYO9_VIOOD 0.56 0.76 1 25 7 30 25 1 1 30 P58441 Cycloviolacin-O9 OS=Viola odorata PE=1 SV=1
104 : CYVG_VIOBI 0.56 0.84 1 25 8 31 25 1 1 31 P85245 Cyclotide vibi-G OS=Viola biflora PE=1 SV=1
105 : CYVI_VIOBI 0.56 0.76 1 25 76 99 25 1 1 103 B1NRQ9 Cyclotide vibi-I (Fragment) OS=Viola biflora PE=1 SV=1
106 : G1CWH0_CLITE 0.56 0.80 1 25 6 29 25 1 1 94 G1CWH0 Cyclotide cliotide T1 (Fragment) OS=Clitoria ternatea PE=2 SV=1
107 : G1CWH4_CLITE 0.56 0.84 1 25 6 29 25 1 1 94 G1CWH4 Cyclotide cliotide T5 (Fragment) OS=Clitoria ternatea PE=2 SV=1
108 : G1CWH6_CLITE 0.56 0.88 1 25 32 55 25 1 1 122 G1CWH6 Cyclotide cliotide T8 OS=Clitoria ternatea PE=2 SV=1
109 : G1CWH8_CLITE 0.56 0.84 1 25 35 58 25 1 1 123 G1CWH8 Cyclotide cliotide T12 OS=Clitoria ternatea PE=2 SV=1
110 : G1CWH9_CLITE 0.56 0.84 1 25 36 59 25 1 1 124 G1CWH9 Cyclotide cter A OS=Clitoria ternatea PE=2 SV=1
111 : VITA_VIOAR 0.56 0.76 1 25 7 30 25 1 1 30 P83840 Vitri peptide A OS=Viola arvensis PE=1 SV=1
112 : VITA_VIOBI 0.56 0.76 1 25 76 99 25 1 1 103 B1NRR3 Cyclotide vitri-A (Fragment) OS=Viola biflora PE=1 SV=1
113 : A9P3S2_9ROSI 0.54 0.79 1 24 78 100 24 1 1 100 A9P3S2 Cyclotide protein Mra13 OS=Melicytus ramiflorus PE=4 SV=1
114 : Q30CA2_9ROSI 0.54 0.75 2 25 1 23 24 1 1 28 Q30CA2 Cyclotide A (Fragment) OS=Hybanthus debilissimus PE=2 SV=1
115 : Q30CA4_9ROSI 0.54 0.88 1 24 4 26 24 1 1 27 Q30CA4 Cyclotide A (Fragment) OS=Hybanthus vernonii subsp. vernonii PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 51 115 3 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
2 2 A a + 0 0 6 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A V S S- 0 0 89 116 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
4 4 A Y S S+ 0 0 224 116 11 YWWYYWWWWWYFFYYYWWWWWFWYYFYFFYYFWWYYYYWWFYWFFYYYYWWFWFFWFWWFWYYFFFYYWF
5 5 A I S S- 0 0 105 116 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILIIIIIIIIIIIIIVIIIIILIIIIIIII
6 6 A P - 0 0 85 116 3 PPPPPPPPPPPPPPPPPPPPPPPPPPPRRPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
7 7 A b + 0 0 1 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 8 A T + 0 0 96 35 10 TTTTTTTTTTTTTTTTTTTTTTTTT.TTTTT.T..F..T................T..............
9 9 A V S S+ 0 0 79 116 28 VVVIVVVVVVVVVVIVVVVVVVIIIIIIIIILIIIIFIVLIFIIIFFIILLIVIIVLVIIIVIIIILLII
10 10 A T S >>>S+ 0 0 19 116 35 TTTTTTTTTTTTTTTTTTTTTTTTTSTTTTTTTTSPTTTTTTSTTTTSSTTSSTTTTSSTSTSSTTTTSS
11 11 A A G >45S+ 0 0 45 115 49 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.GGKASAATGGASSAATATTATAATTIGSGASSAA
12 12 A L G 345S+ 0 0 149 115 62 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLIV.IIMILPAVIIVLLAALAVVLVAAVVVVVIAAAAA
13 13 A L G <45S- 0 0 117 115 46 LLLLLLLLLLLLLALVVLIILLMFLLFLLLLVAAL.AALAALLVAAVLLIILIVVMVIIVIIILAIIVII
14 14 A G T <<5S+ 0 0 28 116 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A c < - 0 0 1 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A S E -A 23 0A 76 116 19 SSSSSSSSSSSSSKKTSSGGSSSSSSSSSSKSKSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSS
17 17 A a E +A 22 0A 53 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A S E > S-A 21 0A 47 116 41 SSSKRKKKKKKKKKKKSKSSKKKKKSKSSLQSKSQRKKKKKSKKKKKKESSKSKKVKSKKSKTKKKKKKK
19 19 A N T 3 S- 0 0 105 116 53 NNNNNDDDDDDDSSDDDDNNDDNDDNDNNNDNSNNNNNDNNSNNNSDSSSSNNNNRNNNNNDDNNSSSNN
20 20 A R T 3 S+ 0 0 139 116 15 RNKKRKKKKKKKKKQKKKKKKKNKKKKNNKKKKKKRKKKKKKKKKKKKKKKKKKKEKKKKKKKKKKKKKK
21 21 A V E < S-A 18 0A 38 116 3 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVIVVVVVVVVVVVV
22 22 A b E -A 17 0A 0 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A Y E +AB 16 27A 81 116 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYVYYYYYYYYYYYYYYYYYYYYYYYYYRYYYYYYYYYYYYYY
24 24 A N S S- 0 0 69 97 55 NNNNR KKKNN NNNNNKNNKNNKKRD NRR N RRN KKRRRRNNKNRRDRN RIRRRRR
25 25 A G S S+ 0 0 81 75 30 N SSSSSNNNNNNNN S N NNNNNNNDDNN S NDNNNNN
26 26 A I S S- 0 0 129 8 16 LLLLL L L
27 27 A P B -B 23 0A 59 2 0 P
28 28 A c - 0 0 33 1 0
29 29 A A 0 0 73 1 0
30 30 A E 0 0 93 1 0
## ALIGNMENTS 71 - 115
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A S 0 0 51 115 3 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS T
2 2 A a + 0 0 6 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A V S S- 0 0 89 116 1 VVVVVVVVVVVIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVL
4 4 A Y S S+ 0 0 224 116 11 FFFYFFFFFFWLYFYFFWWFWFFFWWWWWWWWWFWFFFFFWWYWF
5 5 A I S S- 0 0 105 116 5 IIIIIIIIIIIILILIIIIIIIIIIIIIIIIIIIIIIIIIIILII
6 6 A P - 0 0 85 116 3 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
7 7 A b + 0 0 1 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 8 A T + 0 0 96 35 10 .............................................
9 9 A V S S+ 0 0 79 116 28 LILLIIIIIILIFIFLLLIIVIIIIILLIIILLLLIIIIIIIFIL
10 10 A T S >>>S+ 0 0 19 116 35 TSTTSTSSSTTTTSTTTTSTTSTSSSTTSSSTTTTTSSTSTTTST
11 11 A A G >45S+ 0 0 45 115 49 TASTAAASAAAATSGSSSSSSTGTAASSSSASSSSGTSGTSSTAS
12 12 A L G 345S+ 0 0 149 115 62 VAAVIAVVVATAIVVAAAAVIVIVVAAAAAAAAATAVVAVAAIAV
13 13 A L G <45S- 0 0 117 115 46 AILIAILLLIIIIVIIIIIAFIAIVIIIIVVVVIVIIVIIIIIIF
14 14 A G T <<5S+ 0 0 28 116 1 GGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A c < - 0 0 1 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A S E -A 23 0A 76 116 19 SSSSSSSSSSSSKSTSSSSSKSSSSSSSSSSSSSSSSSSSSSKSS
17 17 A a E +A 22 0A 53 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A S E > S-A 21 0A 47 116 41 KKKKKKKKKKKKQKKKKKKKEKKKKKKKKKKKKKKKKKKKKKQKK
19 19 A N T 3 S- 0 0 105 116 53 NNSSNTSNSSSDGSDSSSNSNNSNSSSSNNSSSSSSNSSNSSGSN
20 20 A R T 3 S+ 0 0 139 116 15 KKKKKKKKKKKKKKKKKSKKKKKKKKKKKKKKKKKKKKKKKKKKR
21 21 A V E < S-A 18 0A 38 116 3 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVG
22 22 A b E -A 17 0A 0 116 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A Y E +AB 16 27A 81 116 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
24 24 A N S S- 0 0 69 97 55 RRKKKRRRRRRQ KKRRRHRRRKRRRRKKRRKRRRNRRRRHRK
25 25 A G S S+ 0 0 81 75 30 NNNNNNNNNNN NNNKNDNNNNNDNNNNNNNNNNNDNNN N
26 26 A I S S- 0 0 129 8 16
27 27 A P B -B 23 0A 59 2 0
28 28 A c - 0 0 33 1 0
29 29 A A 0 0 73 1 0
30 30 A E 0 0 93 1 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 1 98 1 0 0 0 0 0 0 0 0 115 0 0 0.100 3 0.96
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 116 0 0 0.000 0 1.00
3 3 A 98 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116 0 0 0.099 3 0.98
4 4 A 0 1 0 0 36 37 26 0 0 0 0 0 0 0 0 0 0 0 0 0 116 0 0 1.126 37 0.88
5 5 A 1 4 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116 0 0 0.227 7 0.94
6 6 A 0 0 0 0 0 0 0 0 0 98 0 0 0 0 2 0 0 0 0 0 116 0 0 0.087 2 0.97
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 116 81 0 0.000 0 1.00
8 8 A 0 0 0 0 3 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 35 0 0 0.130 4 0.89
9 9 A 23 18 53 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116 0 0 1.156 38 0.71
10 10 A 0 0 0 0 0 0 0 0 0 1 28 72 0 0 0 0 0 0 0 0 116 1 0 0.636 21 0.64
11 11 A 0 0 1 0 0 0 0 9 53 0 23 13 0 0 0 1 0 0 0 0 115 0 0 1.237 41 0.50
12 12 A 23 33 10 1 0 0 0 0 30 1 0 2 0 0 0 0 0 0 0 0 115 0 0 1.455 48 0.38
13 13 A 16 31 36 2 3 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 115 0 0 1.465 48 0.53
14 14 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 1 0 116 0 0 0.050 1 0.98
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 116 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 2 0 0 90 3 0 0 0 6 0 0 0 0 116 0 0 0.432 14 0.81
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 116 0 0 0.000 0 1.00
18 18 A 1 1 0 0 0 0 0 0 0 0 16 1 0 0 2 75 3 2 0 0 116 0 0 0.884 29 0.58
19 19 A 0 0 0 0 0 0 0 2 0 0 34 1 0 0 1 0 0 0 43 20 116 0 0 1.202 40 0.46
20 20 A 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 90 1 1 3 0 116 0 0 0.472 15 0.85
21 21 A 97 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 116 0 0 0.137 4 0.97
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 116 0 0 0.000 0 1.00
23 23 A 1 0 0 0 0 0 98 0 0 0 0 0 0 0 1 0 0 0 0 0 116 0 0 0.099 3 0.94
24 24 A 0 0 1 0 0 0 0 0 0 0 0 0 0 2 48 21 1 0 25 2 97 0 0 1.277 42 0.44
25 25 A 0 0 0 0 0 0 0 1 0 0 9 0 0 0 0 1 0 0 80 8 75 0 0 0.717 23 0.70
26 26 A 0 88 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.377 12 0.83
27 27 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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