Complet list of 1cl4 hssp file
Complete list of 1cl4.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1CL4
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-09
HEADER VIRAL PROTEIN 06-MAY-99 1CL4
COMPND MOL_ID: 1; MOLECULE: PROTEIN (GAG POLYPROTEIN); CHAIN: A; FRAGMENT: GA
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; ORGANISM_TA
AUTHOR Y.GAO,K.KALUARACHCHI,D.P.GIEDROC
DBREF 1CL4 A 21 80 UNP P07567 GAG_MPMV 546 605
SEQLENGTH 32
NCHAIN 1 chain(s) in 1CL4 data set
NALIGN 91
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : GAG_MPMV 2LPY 1.00 1.00 1 32 574 605 32 0 0 657 P07567 Gag polyprotein OS=Mason-Pfizer monkey virus GN=gag PE=1 SV=3
2 : O56224_MPMV 1.00 1.00 1 32 574 605 32 0 0 1771 O56224 RT-IN OS=Mason-Pfizer monkey virus GN=gag-pro-pol PE=4 SV=2
3 : O56225_MPMV 2F76 1.00 1.00 1 32 574 605 32 0 0 657 O56225 Pr78 OS=Mason-Pfizer monkey virus GN=gag PE=1 SV=2
4 : O92810_MPMV 3TTA 1.00 1.00 1 32 574 605 32 0 0 911 O92810 Pr95 OS=Mason-Pfizer monkey virus GN=gag-pro PE=1 SV=2
5 : GAG_SRV1 2F76 0.94 1.00 2 32 576 606 31 0 0 658 P04022 Gag polyprotein OS=Simian retrovirus SRV-1 GN=gag PE=1 SV=3
6 : GAG_SRV2 0.94 1.00 1 32 571 602 32 0 0 654 P51516 Gag polyprotein OS=Simian retrovirus SRV-2 GN=gag PE=3 SV=3
7 : Q9IWX3_9RETR 0.94 1.00 1 32 158 189 32 0 0 208 Q9IWX3 Gag protein (Fragment) OS=Simian retrovirus 5 GN=gag PE=2 SV=1
8 : Q9WQ02_SRV2 0.94 1.00 1 32 571 602 32 0 0 654 Q9WQ02 Gag protein OS=Simian retrovirus SRV-2 GN=gag PE=4 SV=1
9 : Q9WQ06_SRV2 0.94 1.00 1 32 571 602 32 0 0 654 Q9WQ06 Gag protein OS=Simian retrovirus SRV-2 GN=gag PE=4 SV=1
10 : E0WCK6_9BETR 0.93 1.00 2 31 577 606 30 0 0 659 E0WCK6 Gag protein OS=Simian retrovirus 4 GN=gag PE=4 SV=1
11 : Q5H872_MPMV 0.93 1.00 2 31 577 606 30 0 0 659 Q5H872 Gag OS=Simian type D retrovirus -Tsukuba GN=gag PE=4 SV=1
12 : L0MXX7_9RETR 0.91 1.00 1 32 577 608 32 0 0 660 L0MXX7 Gag protein OS=Simian retrovirus Y GN=gag PE=4 SV=1
13 : F8VBW4_MPMV 0.81 1.00 1 32 575 606 32 0 0 658 F8VBW4 Gag protein OS=Simian endogenous retrovirus vero ATCC CCL-81 PE=2 SV=1
14 : O41288_MPMV 0.81 1.00 1 32 575 606 32 0 0 658 O41288 Gag protein OS=Simian endogenous retrovirus GN=gag PE=4 SV=1
15 : A9LHI8_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 A9LHI8 Gag OS=Ovis aries GN=gag PE=4 SV=1
16 : A9LHJ3_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 A9LHJ3 Gag OS=Ovis aries GN=gag PE=4 SV=1
17 : A9LHJ8_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 A9LHJ8 Gag OS=Ovis aries GN=gag PE=4 SV=1
18 : A9LHL3_SHEEP 0.77 0.87 2 31 537 566 30 0 0 616 A9LHL3 Gag OS=Ovis aries GN=gag PE=4 SV=1
19 : A9LHM8_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 A9LHM8 Gag OS=Ovis aries GN=gag PE=4 SV=1
20 : A9LHN7_SHEEP 0.77 0.90 2 31 536 565 30 0 0 615 A9LHN7 Gag OS=Ovis aries GN=gag PE=4 SV=1
21 : A9LHP4_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 A9LHP4 Gag OS=Ovis aries GN=gag PE=4 SV=1
22 : D3GGN4_9BETR 0.77 0.90 2 31 535 564 30 0 0 614 D3GGN4 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
23 : D3GGN8_9BETR 0.77 0.90 2 31 534 563 30 0 0 613 D3GGN8 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
24 : D3GGP6_9BETR 0.77 0.90 2 31 534 563 30 0 0 613 D3GGP6 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
25 : D9I3F2_9BETR 0.77 0.90 2 31 533 562 30 0 0 612 D9I3F2 Gag protein OS=Enzootic nasal tumour virus of goats GN=gag PE=4 SV=1
26 : D9YZJ3_9BETR 0.77 0.90 2 31 534 563 30 0 0 613 D9YZJ3 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
27 : D9YZK1_9BETR 0.77 0.90 2 31 535 564 30 0 0 614 D9YZK1 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
28 : GAG_JSRV 2V4X 0.77 0.90 2 31 533 562 30 0 0 612 P31622 Gag polyprotein OS=Sheep pulmonary adenomatosis virus GN=gag PE=1 SV=1
29 : Q09PL2_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 Q09PL2 Gag protein OS=Ovis aries GN=gag PE=4 SV=1
30 : Q7SMF1_9BETR 0.77 0.90 2 31 533 562 30 0 0 612 Q7SMF1 Gag protein OS=Enzootic nasal tumour virus of goats PE=4 SV=1
31 : Q95N68_JSRV 0.77 0.90 2 31 532 561 30 0 0 611 Q95N68 Gag protein OS=Sheep pulmonary adenomatosis virus GN=gag PE=4 SV=1
32 : Q9N1S0_SHEEP 0.77 0.87 2 31 537 566 30 0 0 616 Q9N1S0 Gag OS=Ovis aries GN=gag PE=4 SV=1
33 : Q9TTD5_SHEEP 0.77 0.90 2 31 537 566 30 0 0 616 Q9TTD5 Gag OS=Ovis aries GN=gag PE=4 SV=1
34 : Q9WR75_JSRV 0.77 0.90 2 31 532 561 30 0 0 611 Q9WR75 Gag OS=Sheep pulmonary adenomatosis virus GN=gag PE=4 SV=1
35 : S4VD46_9BETR 0.77 0.90 2 31 534 563 30 0 0 613 S4VD46 Gag OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
36 : A9LHN2_SHEEP 0.73 0.87 2 31 537 566 30 0 0 616 A9LHN2 Gag OS=Ovis aries GN=gag PE=4 SV=1
37 : GAG_MMTVB 0.73 0.90 2 31 551 580 30 0 0 591 P10258 Gag polyprotein OS=Mouse mammary tumor virus (strain BR6) GN=gag PE=3 SV=3
38 : GAG_MMTVC 1DSQ 0.73 0.90 2 31 551 580 30 0 0 591 P11284 Gag polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag PE=1 SV=3
39 : O56220_MMTV 0.73 0.90 2 31 551 580 30 0 0 1755 O56220 Pr160 OS=Mouse mammary tumor virus GN=gag-pro-pol PE=4 SV=2
40 : O92804_MMTV 0.73 0.90 2 31 551 580 30 0 0 860 O92804 Pr110 OS=Mouse mammary tumor virus GN=gag-pro PE=4 SV=2
41 : POL_MMTVC 0.73 0.90 2 31 551 580 30 0 0 1755 P11283 Gag-Pro-Pol polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro-pol PE=1 SV=2
42 : PRO_MMTVC 0.73 0.90 2 31 551 580 30 0 0 860 Q9IZT2 Gag-Pro polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro PE=1 SV=1
43 : Q83391_MMTV 0.73 0.90 2 31 551 580 30 0 0 591 Q83391 Gag pro pol polyprotein OS=Mouse mammary tumor virus GN=gag pro pol PE=4 SV=1
44 : Q9WJ20_9BETR 0.73 0.87 2 31 534 563 30 0 0 613 Q9WJ20 Gag protein OS=Ovine enzootic nasal tumor virus GN=gag PE=4 SV=1
45 : Q9WJP5_MMTV 0.73 0.90 2 31 551 580 30 0 0 591 Q9WJP5 Pr77 OS=Mouse mammary tumor virus GN=gag PE=4 SV=2
46 : Q9IZT8_MMTV 0.72 0.90 3 31 552 580 29 0 0 1755 Q9IZT8 Gag-Pro-Pol OS=Exogenous mouse mammary tumor virus GN=gag-pro-pol PE=4 SV=1
47 : Q9IZU3_MMTV 0.72 0.90 3 31 552 580 29 0 0 1755 Q9IZU3 Gag-Pro-Pol OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag-pro-pol PE=4 SV=1
48 : A9LHM0_SHEEP 0.70 0.83 2 31 537 566 30 0 0 616 A9LHM0 Gag OS=Ovis aries GN=gag PE=4 SV=1
49 : A9LHM7_SHEEP 0.70 0.83 2 31 537 566 30 0 0 616 A9LHM7 Gag OS=Ovis aries GN=gag PE=4 SV=1
50 : K9W7J4_MMTV 0.70 0.90 2 31 147 176 30 0 0 187 K9W7J4 Gag (Fragment) OS=Human betaretrovirus PE=4 SV=1
51 : Q7SPW6_MMTV 0.70 0.90 2 31 147 176 30 0 0 187 Q7SPW6 Gag (Fragment) OS=Human betaretrovirus PE=4 SV=1
52 : Q99J11_MOUSE 0.70 0.90 2 31 364 393 30 0 0 404 Q99J11 BC005685 protein (Fragment) OS=Mus musculus GN=BC005685 PE=2 SV=1
53 : Q9HBF6_9BETR 0.70 0.90 2 31 288 317 30 0 0 328 Q9HBF6 Gag-pro-pol protein (Fragment) OS=Human mammary tumor virus PE=4 SV=1
54 : Q9IZT6_MMTV 0.70 0.90 2 31 551 580 30 0 0 591 Q9IZT6 Gag OS=Exogenous mouse mammary tumor virus GN=gag PE=4 SV=1
55 : Q9IZT7_MMTV 0.70 0.90 2 31 551 580 30 0 0 860 Q9IZT7 Gag-Pro OS=Exogenous mouse mammary tumor virus GN=gag-pro PE=4 SV=1
56 : Q9IZU1_MMTV 0.70 0.90 2 31 551 580 30 0 0 591 Q9IZU1 Gag OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag PE=4 SV=1
57 : Q9IZU2_MMTV 0.70 0.90 2 31 551 580 30 0 0 860 Q9IZU2 Gag-Pro OS=Endogenous mouse mammary tumor virus Mtv1 GN=gag-pro PE=4 SV=1
58 : U3KLZ9_RABIT 0.70 0.89 5 31 413 439 27 0 0 501 U3KLZ9 Uncharacterized protein (Fragment) OS=Oryctolagus cuniculus PE=4 SV=1
59 : GAG_SMRVH 0.64 0.88 5 29 649 673 25 0 0 740 P21411 Gag polyprotein OS=Squirrel monkey retrovirus GN=gag PE=3 SV=3
60 : M3WTA7_FELCA 0.64 0.82 4 31 130 157 28 0 0 1047 M3WTA7 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
61 : M3X044_FELCA 0.64 0.86 4 31 521 548 28 0 0 557 M3X044 Uncharacterized protein OS=Felis catus PE=4 SV=1
62 : Q4JNY4_HUMAN 0.64 0.96 2 29 579 606 28 0 0 668 Q4JNY4 Gag (Fragment) OS=Homo sapiens GN=gag PE=4 SV=1
63 : Q8NFP3_HUMAN 0.63 0.81 2 28 539 565 27 0 0 622 Q8NFP3 Gag protein OS=Homo sapiens PE=4 SV=1
64 : M3ZBN2_NOMLE 0.61 0.90 2 32 474 504 31 0 0 561 M3ZBN2 Uncharacterized protein OS=Nomascus leucogenys PE=4 SV=1
65 : Q866Y8_RABIT 0.61 0.82 2 29 63 90 28 0 0 149 Q866Y8 Gag protein (Fragment) OS=Oryctolagus cuniculus PE=4 SV=1
66 : L8IFS6_9CETA 0.59 0.93 1 29 476 504 29 0 0 516 L8IFS6 HERV-K_6q14.1 provirus ancestral Gag polyprotein (Fragment) OS=Bos mutus GN=M91_10198 PE=4 SV=1
67 : M3WSX7_FELCA 0.59 0.86 4 32 521 549 29 0 0 800 M3WSX7 Uncharacterized protein OS=Felis catus PE=4 SV=1
68 : GAK10_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P87889 HERV-K_5q33.3 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=4
69 : GAK11_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P63145 HERV-K_22q11.21 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
70 : GAK12_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P63130 HERV-K_1q22 provirus ancestral Gag polyprotein OS=Homo sapiens PE=3 SV=2
71 : GAK1_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P62683 HERV-K_12q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
72 : GAK2_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 Q7LDI9 HERV-K_7p22.1 provirus ancestral Gag polyprotein OS=Homo sapiens GN=ERVK6 PE=1 SV=3
73 : GAK3_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 Q9YNA8 HERV-K_19q12 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=3
74 : GAK4_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P63126 HERV-K_6q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
75 : GAK5_HUMAN 0.58 0.94 2 32 579 609 31 0 0 666 P62684 HERV-K_19p13.11 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
76 : GAK6_HUMAN 0.58 0.94 2 32 579 609 31 0 0 647 P62685 HERV-K_8p23.1 provirus ancestral Gag polyprotein OS=Homo sapiens PE=1 SV=2
77 : I6QQE1_MACFA 0.58 0.94 2 32 608 638 31 0 0 695 I6QQE1 Gag protein OS=Macaca fascicularis GN=gag PE=4 SV=1
78 : M3Z829_MUSPF 0.58 0.77 2 32 533 563 31 0 0 607 M3Z829 Uncharacterized protein OS=Mustela putorius furo PE=4 SV=1
79 : P87891_9RETR 0.58 0.94 2 32 339 369 31 0 0 426 P87891 Gag protein (Fragment) OS=Human endogenous retrovirus K GN=gag PE=4 SV=1
80 : POK4_HUMAN 0.58 0.94 2 32 579 609 31 0 0 1117 P63128 HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein OS=Homo sapiens PE=3 SV=3
81 : Q96897_9RETR 0.58 0.90 2 32 579 609 31 0 0 666 Q96897 Gag protein OS=Human endogenous retrovirus K GN=gag PE=4 SV=1
82 : V9H0H3_HUMAN 0.58 0.94 2 32 579 609 31 0 0 2294 V9H0H3 Gag-Pro-Pol-Env protein OS=Homo sapiens PE=4 SV=1
83 : G3H3Y2_CRIGR 0.57 0.86 2 29 399 426 28 0 0 493 G3H3Y2 Retrovirus-related Gag polyprotein OS=Cricetulus griseus GN=I79_004974 PE=4 SV=1
84 : Q88189_SMRVH 0.57 0.82 5 32 307 334 28 0 0 393 Q88189 Gag protein (Fragment) OS=Squirrel monkey retrovirus GN=gag PE=2 SV=1
85 : A8BDN3_BOVIN 0.56 0.88 1 32 468 499 32 0 0 507 A8BDN3 Gag protein OS=Bos taurus GN=gag PE=4 SV=1
86 : GAK8_HUMAN 0.55 0.87 2 32 579 609 31 0 0 667 Q9HDB9 HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens GN=ERVK-5 PE=1 SV=3
87 : Q60505_9RODE 0.52 0.72 4 32 486 514 29 0 0 567 Q60505 Chinese hamster provirus OS=Cricetulus sp. PE=4 SV=1
88 : Q7M6U4_MOUSE 0.52 0.77 2 32 496 526 31 0 0 576 Q7M6U4 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
89 : Q7M6W5_MOUSE 0.52 0.77 2 32 496 526 31 0 0 576 Q7M6W5 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
90 : Q7M6W6_MOUSE 0.52 0.77 2 32 496 526 31 0 0 545 Q7M6W6 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
91 : K7DZI7_MONDO 0.48 0.77 1 31 427 457 31 0 0 464 K7DZI7 Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 49 A V 0 0 192 15 18 VVVV VVVV VII V
2 50 A P + 0 0 71 83 17 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPSSSSSSSS PPPPP PPP
3 51 A G + 0 0 35 85 49 GGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNGGGGGGGNGGGNNGGGGGGGG DGGGS DDD
4 52 A L S S- 0 0 79 89 11 LLLLLLVLLLLVLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL IILLLLLILLL
5 53 A C - 0 0 1 92 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCFCCCCCCCCCCCCCCCCCCCCC
6 54 A P S S+ 0 0 111 92 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
7 55 A R S S+ 0 0 159 92 5 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRR
8 56 A C - 0 0 5 92 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCCCCCCCCCCCCCCC
9 57 A K S S+ 0 0 88 92 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKHKRRKRKRKRKKK
10 58 A R S S+ 0 0 175 92 21 RRRRRRRRRRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRRKRKRKRKKK
11 59 A G - 0 0 17 92 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
12 60 A K S S+ 0 0 153 92 80 KKKKKKKKKKKKRRKKKKKKKKKKKKKKKKKKKKKTYYYYYYYKYYYKRYYYYYYYYYFYYKNKNNYKKK
13 61 A H S S- 0 0 38 92 2 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHH
14 62 A W - 0 0 109 92 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
15 63 A A S > S+ 0 0 40 92 49 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAKKKKKKKAKKKAAKKKNKKKKAAVVAVGVAVAAA
16 64 A N T 3 S+ 0 0 177 92 68 NNNNNNNNNNNNNNRRRRRRRRRRRRRRRRRRRRRRSSSSSSSRSSSRRSSSSSSSSNSNNSSNSNNSSS
17 65 A E T 3 S+ 0 0 138 92 36 EEEEEEEEEEEEEEDDDDDDDDDDDDDDDDDDDDDDEEEEEEEDEEEDDEEEEEEEEEEEEQEQEQEQQQ
18 66 A C < + 0 0 35 92 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
19 67 A K - 0 0 169 92 39 KKKKKKKKKKKKKKRRRHRRRRRRRRRRRRRHRRRRKKKKKKKRKKKRHKKKKKKKKRRRRRYHYRRRRR
20 68 A S > - 0 0 15 92 23 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSFSFSSSSS
21 69 A K T 3 S+ 0 0 159 92 15 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKK
22 70 A T T 3 S- 0 0 49 92 80 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTFFFFFFFTFFFTTFFFFFFFFTLTTFIFMFTFFF
23 71 A D S < S- 0 0 95 92 21 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDNDNHDDDD
24 72 A N S S+ 0 0 138 92 82 NNNNSSNSSSSSSSVVVVVVVVVVVVVVVVVVVVVVKKKKKKKVKKKVVKKKKKKKKSICRKSKSKSKKK
25 73 A Q S S- 0 0 123 92 65 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDDDDDDDQDDDQQDDDDDDDDSNNNNANADNNNN
26 74 A G S S- 0 0 45 92 8 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27 75 A N + 0 0 70 92 49 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNQQNKQNQNTKQQQ
28 76 A P + 0 0 28 92 13 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
29 77 A I - 0 0 9 91 18 IIIILLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLL LLLLLLL
30 78 A P S S+ 0 0 115 86 46 PPPPPPPPPPPPSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP QQ S QSSS
31 79 A P 0 0 88 86 42 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP GP G GGGG
32 80 A H 0 0 160 37 54 HHHHHHHHH HRR N NNNN
## ALIGNMENTS 71 - 91
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 49 A V 0 0 192 15 18 L V
2 50 A P + 0 0 71 83 17 PPPPPPSPPPPPP PS PPPP
3 51 A G + 0 0 35 85 49 DDDDDDGLDDDDG GG GGGG
4 52 A L S S- 0 0 79 89 11 LLLLLLLLLLLLL VLLIIIL
5 53 A C - 0 0 1 92 2 CCCCCCCCCCCCCCCCCCCCC
6 54 A P S S+ 0 0 111 92 2 PPPPPPPPPPPPPPPPRPPPP
7 55 A R S S+ 0 0 159 92 5 RRRRRRRKRRRRRRKKRRRRR
8 56 A C - 0 0 5 92 2 CCCCCCCCCCCCCCCCCCCCC
9 57 A K S S+ 0 0 88 92 28 KKKKKKKQKKKKRKKGGGGGK
10 58 A R S S+ 0 0 175 92 21 KKKKKKKRKKKKKKRKKKKKR
11 59 A G - 0 0 17 92 2 GGGGGGGGGGGGGGGGGGGGS
12 60 A K S S+ 0 0 153 92 80 KKKKKKKYKKKKNFFKYRRRR
13 61 A H S S- 0 0 38 92 2 HHHHHHHHHHHHHHHHHHHHH
14 62 A W - 0 0 109 92 0 WWWWWWWWWWWWWWWWRWWWW
15 63 A A S > S+ 0 0 40 92 49 AAAAAAGAAAAAAALAAAAAA
16 64 A N T 3 S+ 0 0 177 92 68 SSSSSSNNSSSSKSNNSKKKS
17 65 A E T 3 S+ 0 0 138 92 36 QQQQQQQEQQLQDEEQEDDDK
18 66 A C < + 0 0 35 92 0 CCCCCCCCCCCCCCCCCCCCC
19 67 A K - 0 0 169 92 39 RRRRRRRRRRRRRRRHKKKKR
20 68 A S > - 0 0 15 92 23 SSSSSSSSSSSSSSSSSHHHY
21 69 A K T 3 S+ 0 0 159 92 15 KKKKKKKQKKKKVRKKVKKKS
22 70 A T T 3 S- 0 0 49 92 80 FFFFFFFKFFFFKLFFRTTTA
23 71 A D S < S- 0 0 95 92 21 DDDDDDDDDDDDDDNDDRRRS
24 72 A N S S+ 0 0 138 92 82 KKKKKKKKKKKKIIKKIVVVQ
25 73 A Q S S- 0 0 123 92 65 NNNNNNNFNNNNSNDDKLLLN
26 74 A G S S- 0 0 45 92 8 GGGGGGGGGGGGGGGGGSSSS
27 75 A N + 0 0 70 92 49 QQQQQQQNQQQQQQNQRRRRS
28 76 A P + 0 0 28 92 13 PPPPPPPIPPPPPPAPLPPPH
29 77 A I - 0 0 9 91 18 LLLLLLLILLLLFIFLLVVVK
30 78 A P S S+ 0 0 115 86 46 SSSSSSSQSSSS ITSPPPPR
31 79 A P 0 0 88 86 42 GGGGGGGGGGGG RPGPGGGP
32 80 A H 0 0 160 37 54 NNNNNNNNNNNN QENRNNN
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 49 A 80 7 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0.628 20 0.82
2 50 A 0 0 0 0 0 0 0 0 0 88 12 0 0 0 0 0 0 0 0 0 83 0 0 0.368 12 0.82
3 51 A 0 1 0 0 0 0 0 52 0 0 1 0 0 0 0 0 0 0 29 16 85 0 0 1.102 36 0.50
4 52 A 3 90 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89 0 0 0.392 13 0.88
5 53 A 0 0 0 0 1 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 92 0 0 0.060 2 0.98
6 54 A 0 0 0 0 0 0 0 0 0 99 0 0 0 0 1 0 0 0 0 0 92 0 0 0.060 2 0.97
7 55 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 4 0 0 0 0 92 0 0 0.179 5 0.94
8 56 A 0 0 0 0 0 0 0 0 0 0 0 0 99 0 1 0 0 0 0 0 92 0 0 0.060 2 0.97
9 57 A 0 0 0 0 0 0 0 5 0 0 0 0 0 1 7 86 1 0 0 0 92 0 0 0.565 18 0.71
10 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26 74 0 0 0 0 92 0 0 0.574 19 0.78
11 59 A 0 0 0 0 0 0 0 99 0 0 1 0 0 0 0 0 0 0 0 0 92 0 0 0.060 2 0.98
12 60 A 0 0 0 0 3 0 26 0 0 0 0 1 0 0 8 58 0 0 4 0 92 0 0 1.161 38 0.19
13 61 A 0 1 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 92 0 0 0.060 2 0.98
14 62 A 0 0 0 0 0 99 0 0 0 0 0 0 0 0 1 0 0 0 0 0 92 0 0 0.060 2 1.00
15 63 A 5 1 0 0 0 0 0 2 72 0 0 0 0 0 0 18 0 0 1 0 92 0 0 0.890 29 0.50
16 64 A 0 0 0 0 0 0 0 0 0 0 41 0 0 0 27 4 0 0 27 0 92 0 0 1.210 40 0.32
17 65 A 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 18 48 0 32 92 0 0 1.127 37 0.64
18 66 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 92 0 0 0.000 0 1.00
19 67 A 0 0 0 0 0 0 2 0 0 0 0 0 0 5 52 40 0 0 0 0 92 0 0 0.947 31 0.61
20 68 A 0 0 0 0 2 0 1 0 0 0 93 0 0 3 0 0 0 0 0 0 92 0 0 0.307 10 0.76
21 69 A 2 0 0 0 0 0 0 0 0 0 1 0 0 0 2 93 1 0 0 0 92 0 0 0.328 10 0.85
22 70 A 0 2 1 1 40 0 0 0 1 0 0 51 0 0 1 2 0 0 0 0 92 0 0 1.073 35 0.20
23 71 A 0 0 0 0 0 0 0 0 0 0 1 0 0 1 3 0 0 0 4 90 92 0 0 0.439 14 0.79
24 72 A 30 0 4 0 0 0 0 0 0 0 14 0 1 0 1 41 1 0 7 0 92 0 0 1.466 48 0.17
25 73 A 0 3 0 0 1 0 0 0 2 0 2 0 0 0 0 1 43 0 24 23 92 0 0 1.418 47 0.34
26 74 A 0 0 0 0 0 0 0 96 0 0 4 0 0 0 0 0 0 0 0 0 92 0 0 0.179 5 0.91
27 75 A 0 0 0 0 0 0 0 0 0 0 1 2 0 0 4 2 23 0 67 0 92 0 0 0.955 31 0.51
28 76 A 0 1 1 0 0 0 0 0 1 96 0 0 0 1 0 0 0 0 0 0 92 0 0 0.239 7 0.87
29 77 A 3 85 9 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 91 0 0 0.601 20 0.81
30 78 A 0 0 1 0 0 0 0 0 0 71 21 1 0 0 1 0 5 0 0 0 86 0 0 0.869 29 0.53
31 79 A 0 0 0 0 0 0 0 26 0 73 0 0 0 0 1 0 0 0 0 0 86 0 0 0.629 20 0.58
32 80 A 0 0 0 0 0 0 0 0 0 0 0 0 0 30 8 0 3 3 57 0 37 0 0 1.081 36 0.46
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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