Complet list of 1chl hssp file
Complete list of 1chl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1CHL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER NEUROTOXIN 09-NOV-94 1CHL
COMPND MOL_ID: 1; MOLECULE: CHLOROTOXIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: LEIURUS QUINQUESTRIATUS; ORGANISM_COMM
AUTHOR G.LIPPENS,J.NAJIB,S.J.WODAK,A.TARTAR
DBREF 1CHL A 1 36 UNP P45639 SCXL_LEIQU 1 36
SEQLENGTH 36
NCHAIN 1 chain(s) in 1CHL data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : SCXL_LEIQU 1CHL 1.00 1.00 1 36 1 36 36 0 0 36 P45639 Chlorotoxin OS=Leiurus quinquestriatus quinquestriatus PE=1 SV=1
2 : SCX1_HOTTS 0.82 0.91 2 35 2 35 34 0 0 35 P15229 Small toxin OS=Hottentotta tamulus sindicus PE=1 SV=1
3 : F1DI80_MESEU 0.81 0.92 1 36 1 34 36 1 2 34 F1DI80 Chlorotoxin-like peptide OS=Mesobuthus eupeus PE=4 SV=1
4 : SCX4_MESEU 0.80 0.89 1 35 1 33 35 1 2 35 P60269 Insectotoxin-I4 OS=Mesobuthus eupeus PE=1 SV=1
5 : SCX8_LEIQH 0.79 0.94 2 35 2 35 34 0 0 38 P55966 Probable toxin Lqh 8/6 OS=Leiurus quinquestriatus hebraeus PE=1 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 158 4 0 M MM
2 2 A a B -A 33 0A 36 6 0 CCCCC
3 3 A M S S- 0 0 69 6 76 MKMMS
4 4 A P - 0 0 72 6 0 PPPPP
5 5 A b S S+ 0 0 13 6 0 CCCCC
6 6 A F + 0 0 164 6 0 FFFFF
7 7 A T S S- 0 0 69 6 0 TTTTT
8 8 A T - 0 0 85 6 0 TTTTT
9 9 A D S S+ 0 0 136 6 0 DDDDD
10 10 A H S S+ 0 0 157 6 51 HPHHQ
11 11 A Q S S+ 0 0 138 6 44 QQNNQ
12 12 A M S >> S+ 0 0 19 6 0 MMMMM
13 13 A A H 3> S+ 0 0 54 6 54 ASAAT
14 14 A R H 34 S+ 0 0 154 6 25 RKKKK
15 15 A K H <> S+ 0 0 124 6 0 KKKKK
16 16 A c H X S+ 0 0 2 6 0 CCCCC
17 17 A D H >X>S+ 0 0 30 6 103 DANRY
18 18 A D H 345S+ 0 0 102 6 0 DDDDD
19 19 A a H 3<5S+ 0 0 69 6 0 CCCCC
20 20 A d H <<5S- 0 0 35 6 0 CCCCC
21 21 A G T <5 - 0 0 41 6 0 GGGGG
22 22 A G S -B 32 0A 105 6 4 YYFFY
30 30 A G T 3 S- 0 0 52 6 0 GGGGG
31 31 A P T 3 S+ 0 0 112 6 0 PPPPP
32 32 A Q E < S- B 0 29A 84 6 0 QQQQQ
33 33 A c E +AB 2 28A 0 6 0 CCCCC
34 34 A L E - B 0 27A 56 6 19 LLLLI
35 35 A d 0 0 59 6 0 CCCCC
36 36 A R 0 0 240 3 0 R R
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 0 67 0 0 0 0 0 0 17 0 0 0 0 17 0 0 0 0 6 0 0 0.868 28 0.24
4 4 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
6 6 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 17 0 0 0 67 0 0 17 0 0 0 6 0 0 0.868 28 0.49
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 0 6 0 0 0.637 21 0.55
12 12 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 67 0 17 17 0 0 0 0 0 0 0 0 6 0 0 0.868 28 0.46
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 6 0 0 0.637 21 0.75
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 17 0 17 0 0 0 0 0 17 0 0 0 17 33 6 0 0 1.561 52 -0.03
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 17 0 0 0 0 0 0 0 33 33 0 0 17 0 6 0 0 1.330 44 0.16
26 26 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
29 29 A 0 0 0 0 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.96
30 30 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
34 34 A 0 83 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.80
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//