Complet list of 1c7u hssp file
Complete list of 1c7u.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1C7U
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-04
HEADER TRANSCRIPTION/DNA 17-MAR-00 1C7U
COMPND MOL_ID: 1; MOLECULE: MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM; CHA
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR G.M.CLORE,K.HUANG
DBREF 1C7U A 1 85 UNP Q02078 MEF2A_HUMAN 2 86
DBREF 1C7U B 101 185 UNP Q02078 MEF2A_HUMAN 2 86
DBREF 1C7U C 201 220 PDB 1C7U 1C7U 201 220
DBREF 1C7U D 221 240 PDB 1C7U 1C7U 221 240
SEQLENGTH 74
NCHAIN 2 chain(s) in 1C7U data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 63
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : C0J6M8_XENLA 0.97 0.97 1 74 2 75 74 0 0 142 C0J6M8 MEF2A alpha 1c isoform OS=Xenopus laevis PE=2 SV=1
2 : H0YKY6_HUMAN 0.97 0.97 1 74 2 75 74 0 0 77 H0YKY6 Myocyte-specific enhancer factor 2A (Fragment) OS=Homo sapiens GN=MEF2A PE=2 SV=1
3 : H0YM62_HUMAN 0.97 0.97 1 74 2 75 74 0 0 85 H0YM62 Myocyte-specific enhancer factor 2A (Fragment) OS=Homo sapiens GN=MEF2A PE=2 SV=1
4 : H3DPI1_TETNG 0.97 0.97 1 74 3 76 74 0 0 152 H3DPI1 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=3 SV=1
5 : I3L7L3_PIG 0.97 0.97 1 74 2 75 74 0 0 94 I3L7L3 Uncharacterized protein OS=Sus scrofa GN=LOC100738718 PE=3 SV=1
6 : M4VJ38_LABRO 0.97 0.97 9 74 2 67 66 0 0 99 M4VJ38 Myoccyte enhancer factor 2A (Fragment) OS=Labeo rohita PE=2 SV=1
7 : Q4REV0_TETNG 0.97 0.97 1 74 3 76 74 0 0 152 Q4REV0 Chromosome 13 SCAF15122, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00035602001 PE=3 SV=1
8 : S4R2H4_MOUSE 0.97 0.97 1 74 2 75 74 0 0 100 S4R2H4 Myocyte enhancer factor 2A, isoform CRA_c OS=Mus musculus GN=Mef2a PE=3 SV=1
9 : C0J6M7_XENLA 0.96 0.96 1 57 2 58 57 0 0 67 C0J6M7 MEF2A MADS box isoform OS=Xenopus laevis PE=3 SV=1
10 : D6RB91_HUMAN 0.96 0.97 1 74 2 75 74 0 0 120 D6RB91 Myocyte-specific enhancer factor 2C (Fragment) OS=Homo sapiens GN=MEF2C PE=2 SV=1
11 : D6RCM6_HUMAN 0.96 0.97 1 74 2 75 74 0 0 129 D6RCM6 Myocyte-specific enhancer factor 2C (Fragment) OS=Homo sapiens GN=MEF2C PE=2 SV=1
12 : D6RG14_HUMAN 0.96 0.97 1 74 2 75 74 0 0 87 D6RG14 Myocyte-specific enhancer factor 2C (Fragment) OS=Homo sapiens GN=MEF2C PE=2 SV=1
13 : D6RG21_HUMAN 0.96 0.97 1 74 2 75 74 0 0 126 D6RG21 Myocyte-specific enhancer factor 2C (Fragment) OS=Homo sapiens GN=MEF2C PE=2 SV=1
14 : D6RJA7_HUMAN 0.96 0.97 1 74 2 75 74 0 0 98 D6RJA7 Myocyte-specific enhancer factor 2C (Fragment) OS=Homo sapiens GN=MEF2C PE=2 SV=1
15 : E9QCL1_DANRE 0.95 0.97 1 74 2 75 74 0 0 86 E9QCL1 Uncharacterized protein OS=Danio rerio GN=mef2ca PE=3 SV=1
16 : H2YKY7_CIOSA 0.95 0.96 1 74 2 75 74 0 0 76 H2YKY7 Uncharacterized protein OS=Ciona savignyi PE=3 SV=1
17 : R7VJD8_CAPTE 0.95 0.96 1 74 3 76 74 0 0 86 R7VJD8 Uncharacterized protein (Fragment) OS=Capitella teleta GN=CAPTEDRAFT_78380 PE=3 SV=1
18 : A2T6Y1_PANTR 0.93 0.93 1 74 2 75 74 0 0 86 A2T6Y1 MEF2D (Fragment) OS=Pan troglodytes GN=MEF2D PE=3 SV=1
19 : A2T7I2_PONPY 0.93 0.93 1 74 2 75 74 0 0 86 A2T7I2 MEF2D (Fragment) OS=Pongo pygmaeus GN=MEF2D PE=3 SV=1
20 : F8W591_DANRE 0.93 0.93 1 74 2 75 74 0 0 76 F8W591 Uncharacterized protein OS=Danio rerio GN=mef2d PE=2 SV=1
21 : Q05BX2_HUMAN 0.93 0.93 1 74 2 75 74 0 0 139 Q05BX2 MEF2D protein OS=Homo sapiens GN=MEF2D PE=2 SV=1
22 : V4CSD3_LOTGI 0.93 0.96 1 74 3 76 74 0 0 88 V4CSD3 Uncharacterized protein (Fragment) OS=Lottia gigantea GN=LOTGIDRAFT_77597 PE=3 SV=1
23 : B5AY00_PIG 0.92 0.93 1 74 2 75 74 0 0 84 B5AY00 Myocyte enhancer factor 2D (Fragment) OS=Sus scrofa PE=2 SV=1
24 : A7SKX3_NEMVE 0.91 0.96 18 74 1 57 57 0 0 60 A7SKX3 Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g122107 PE=3 SV=1
25 : K1QPK5_CRAGI 0.91 0.96 1 74 2 75 74 0 0 116 K1QPK5 Myocyte-specific enhancer factor 2A OS=Crassostrea gigas GN=CGI_10021696 PE=3 SV=1
26 : Q6RIA0_NEMVE 0.90 0.95 1 62 2 63 62 0 0 63 Q6RIA0 MADS box transcription factor MEF2 (Fragment) OS=Nematostella vectensis GN=MEF2 PE=2 SV=1
27 : T1G1B7_HELRO 0.86 0.96 1 74 2 75 74 0 0 92 T1G1B7 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_73207 PE=3 SV=1
28 : T1G5P9_HELRO 0.84 0.95 1 74 2 75 74 0 0 87 T1G5P9 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_84874 PE=3 SV=1
29 : U9UGN8_RHIID 0.84 0.90 1 70 2 71 70 0 0 72 U9UGN8 Uncharacterized protein (Fragment) OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) GN=GLOINDRAFT_42742 PE=3 SV=1
30 : B3RSU3_TRIAD 0.82 0.93 1 74 2 75 74 0 0 139 B3RSU3 Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_22691 PE=3 SV=1
31 : F6TNB2_CALJA 0.82 0.89 1 74 2 75 74 0 0 139 F6TNB2 Uncharacterized protein OS=Callithrix jacchus GN=MEF2D PE=3 SV=1
32 : T1EM11_HELRO 0.82 0.95 1 74 2 75 74 0 0 94 T1EM11 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_156791 PE=3 SV=1
33 : Q4S469_TETNG 0.78 0.82 1 74 5 87 83 1 9 713 Q4S469 Chromosome undetermined SCAF14743, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00024322001 PE=3 SV=1
34 : H2SHI4_TAKRU 0.75 0.77 1 74 5 92 88 1 14 713 H2SHI4 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101067425 PE=3 SV=1
35 : T1KCI8_TETUR 0.74 0.78 1 74 2 92 91 1 17 120 T1KCI8 Uncharacterized protein OS=Tetranychus urticae PE=3 SV=1
36 : T1KVB1_TETUR 0.74 0.78 1 74 2 92 91 1 17 127 T1KVB1 Uncharacterized protein OS=Tetranychus urticae PE=3 SV=1
37 : I0YWG3_9CHLO 0.71 0.87 1 70 5 74 70 0 0 102 I0YWG3 Myocyte enhancer factor 2D OS=Coccomyxa subellipsoidea C-169 GN=COCSUDRAFT_16128 PE=3 SV=1
38 : T1EJL4_HELRO 0.67 0.92 1 74 2 76 75 1 1 87 T1EJL4 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_145634 PE=3 SV=1
39 : M9UVY4_DICDI 0.64 0.85 1 73 2 74 73 0 0 84 M9UVY4 Mef2A (Fragment) OS=Dictyostelium discoideum GN=mef2A PE=3 SV=1
40 : S2K993_MUCC1 0.63 0.83 1 70 2 71 70 0 0 76 S2K993 MADS-box transcription enhancer factor 2D OS=Mucor circinelloides f. circinelloides (strain 1006PhL) GN=HMPREF1544_01055 PE=3 SV=1
41 : W1P358_AMBTC 0.54 0.78 1 69 2 70 69 0 0 73 W1P358 Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00262770 PE=4 SV=1
42 : C1IDW8_CAPBU 0.53 0.76 1 70 2 71 70 0 0 72 C1IDW8 SEEDSTICK-like protein (Fragment) OS=Capsella bursa-pastoris GN=STKa PE=2 SV=1
43 : W5FNP4_WHEAT 0.53 0.80 1 73 2 75 74 1 1 87 W5FNP4 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
44 : U5GWY9_POPTR 0.51 0.72 1 71 2 72 71 0 0 73 U5GWY9 Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s29100g PE=3 SV=1
45 : E9JPX3_COFAR 0.50 0.69 1 72 2 79 78 1 6 170 E9JPX3 MADS-box protein AGL2 subfamily OS=Coffea arabica GN=C05 PE=2 SV=1
46 : G0KY86_ESCCA 0.49 0.77 1 73 2 75 74 1 1 75 G0KY86 MADS-box protein agl66 (Fragment) OS=Eschscholzia californica GN=agl66 PE=3 SV=1
47 : L1JFY8_GUITH 0.49 0.69 1 68 2 75 74 2 6 75 L1JFY8 Uncharacterized protein (Fragment) OS=Guillardia theta CCMP2712 GN=GUITHDRAFT_44812 PE=3 SV=1
48 : U5FSC6_POPTR 0.46 0.73 1 73 2 70 74 3 6 71 U5FSC6 Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10190g PE=3 SV=1
49 : Q710D8_GNEGN 0.45 0.64 1 73 2 79 78 1 5 225 Q710D8 Putative MADS-domain transcription factor OS=Gnetum gnemon GN=m15 PE=3 SV=1
50 : Q9FST7_GNEGN 0.45 0.64 1 73 2 79 78 1 5 225 Q9FST7 Putative MADS-domain transcription factor GGM15 OS=Gnetum gnemon GN=ggm15 PE=2 SV=1
51 : W5G320_WHEAT 0.45 0.72 1 68 2 75 74 1 6 78 W5G320 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
52 : Q5G0F6_9MAGN 0.44 0.64 1 68 2 77 78 3 12 214 Q5G0F6 PISTILLATA-like protein OS=Thalictrum dioicum GN=PI-2 PE=2 SV=1
53 : T1LW39_TRIUA 0.43 0.68 1 73 6 84 79 1 6 95 T1LW39 Uncharacterized protein (Fragment) OS=Triticum urartu PE=3 SV=1
54 : W5F6E3_WHEAT 0.43 0.67 1 73 2 80 79 1 6 212 W5F6E3 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
55 : W5HCL2_WHEAT 0.42 0.59 1 68 2 91 90 2 22 267 W5HCL2 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
56 : W5A7U4_WHEAT 0.41 0.65 1 74 2 74 74 1 1 76 W5A7U4 Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
57 : A0CJL0_PARTE 0.36 0.58 1 73 2 82 83 3 12 144 A0CJL0 Chromosome undetermined scaffold_2, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00000689001 PE=3 SV=1
58 : A0BUA2_PARTE 0.35 0.59 1 73 2 82 83 3 12 143 A0BUA2 Chromosome undetermined scaffold_129, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00032351001 PE=3 SV=1
59 : C5XJU0_SORBI 0.35 0.51 1 72 2 82 83 3 13 446 C5XJU0 Putative uncharacterized protein Sb03g013650 OS=Sorghum bicolor GN=Sb03g013650 PE=3 SV=1
60 : M8BVR8_AEGTA 0.35 0.58 2 74 4 81 81 4 11 210 M8BVR8 MADS-box transcription factor 29 OS=Aegilops tauschii GN=F775_13986 PE=3 SV=1
61 : N4UKR4_FUSC1 0.34 0.58 1 74 2 82 83 3 11 211 N4UKR4 MADS-box transcription factor pvg4 OS=Fusarium oxysporum f. sp. cubense (strain race 1) GN=FOC1_g10000995 PE=3 SV=1
62 : F6H2S7_VITVI 0.30 0.62 1 73 2 80 79 1 6 154 F6H2S7 Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01980 PE=3 SV=1
63 : W5ELH9_WHEAT 0.30 0.55 2 74 44 137 94 1 21 228 W5ELH9 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
## ALIGNMENTS 1 - 63
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 117 60 9 GGGGG GGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGAGGAGAAGGGGG GG
2 2 A R + 0 0 253 62 2 RRRRR RRRRRRRRRRRRRRRRR RRRRRRRRRRRRRRRRRRRRRRKRRRRRRRRRRRRRRRR
3 3 A K S S- 0 0 136 62 71 KKKKK KKKKKKKKKKKKKKKKK KKKKKKKKKKKKKRNKGGGGGVRGGGGGGGGQKKRGRRG
4 4 A K - 0 0 193 62 12 KKKKK KKKKKKKKKKKKKKKKK KKKKKKKKKKKKKKKKKKKKRKKKKKKKKKRRKKKKRKP
5 5 A I - 0 0 92 62 24 IIIII IIIIIIIIIIIIIIIII IIIIIISIIIIIIIIIIIIIVLIVLLIIIIVRIIVLILV
6 6 A Q - 0 0 154 62 70 QQQQQ QQQQQQQQQQQQQQQQQ QQQKQSQKQQRRRNTQEEAVEQKQEEVEVVEEPSSEESE
7 7 A I S S+ 0 0 64 62 19 IIIII IIIIIIIIIIIIIIIII IIIIIIIIIIIIIIIIIIIILIVMIIIIIILNIIMVIIL
8 8 A T S S- 0 0 74 62 76 TTTTT TTTTTTTTASSQQQQSQ SSSSKTQSQQSSESEQKKERKKEKKKRKRRKRATGKKRR
9 9 A R - 0 0 113 63 37 RRRRRRRRRRRRRRRRRRRRRRR RRRQPRGQRRRRKPKPRRRRRKKRRRRRRRRLKKLRKRR
10 10 A I - 0 0 44 63 4 IIIIIIIIIIIIIIIIIIIIIII IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIIIILI
11 11 A M S S+ 0 0 187 63 80 MMMMMMMMMMMMMMMGGTTTTST GGETKGTTTTTTGLSKEEDDEEKEEEEEEEEEEEPDPQE
12 12 A D > - 0 0 103 63 39 DDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDNDDNNNNNDNNNKNKKNDDDNDSSD
13 13 A E H > S+ 0 0 154 63 75 EEEEEEEEEEEEEEEEEEEEEEE EEEEEEEEEEEEEEEDRSASKNDSLLMPMMKRRRRDEGR
14 14 A R H > S+ 0 0 199 63 75 RRRRRRRRRRRRRRRRRRRRRRR RRRRRRRRRRRRRRRRTTTTITRVTTSTSSIEQQRGSRT
15 15 A N H > S+ 0 0 71 63 52 NNNNNNNNNNNNNNNNNNNNNNN NNNNNNSNNNNNNNNNNNNSNNTHNNSNSSNSQQVLAES
16 16 A R H X S+ 0 0 82 63 3 RRRRRRRRRRRRRRRRRRRRRRR RRRRRRRRKKRRRKRRRRRRRRRRRRRRRRRRRRRRRRR
17 17 A Q H X S+ 0 0 91 63 20 QQQQQQQQQQQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQLQQQQQQQQQNNAQRQQ
18 18 A V H X S+ 0 0 50 64 36 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVTYVVVVAVVVVVVVAVTTVVVVVVIISVTAG
19 19 A T H X S+ 0 0 26 64 15 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTstssTTTTTTTTTTTTTTTTTTtTTTTTTKr
20 20 A F H X S+ 0 0 11 64 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFffffFFFFFFFFFFFFFFFYFFfFFFFFFYf
21 21 A T H X S+ 0 0 53 64 73 TTTTTTTTTTTTTTTTTTTTTTTTTTTTLTTTTTTTTTTLSCSSASQCAASSSSASHHGCKSS
22 22 A K H X S+ 0 0 146 64 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQK
23 23 A R H X S+ 0 0 56 64 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
24 24 A K H X S+ 0 0 12 64 23 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRRKRKKRRRRRKKKKRKKR
25 25 A F H X S+ 0 0 135 64 100 FFFFFFFFFFFFFFFFFFFFFFFFFFFFYFFFFFFFNFNHTNGSNNMSNNRNHHNSIIEGEQS
26 26 A G H X S+ 0 0 22 64 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG
27 27 A L H >X S+ 0 0 15 64 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLLLLIL
28 28 A M H 3X S+ 0 0 10 64 27 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMIMLLMLLIILMMLLMMLWLLKLFLF
29 29 A K H 3X S+ 0 0 101 64 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRK
30 30 A K H S+ 0 0 54 64 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
31 31 A A H X5S+ 0 0 4 64 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32 32 A Y H X5S+ 0 0 130 64 70 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYMYMYHYRKYYMKKKRRHHYSYYNCYNF
33 33 A E H X5S+ 0 0 32 64 1 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDE
34 34 A L H X5S+ 0 0 0 64 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLLLLLL
35 35 A S H X> - B 0 52A 16 64 62 NNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNTSPSSSSSSgSSSSsSSSSddpseSS
49 49 A S T 34 S+ 0 0 97 63 67 SSSSSSSSSSSSSSSSSHHHHGHSSSGSSSRNHHSSSNSSSTSSNPc.PPSmSSNEaaglgPP
50 50 A S T 34 S- 0 0 70 64 69 SSSSSSSSSTTTTTTSSSSSSSSAAATANNAATTTTNSNNSRTTRSKATTTSTTRAIIAAATA
51 51 A N T <4 S+ 0 0 137 64 57 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSnNNGGGGGGqhGGGDGGGGHHGGEGG
52 52 A K E < -B 48 0A 74 58 20 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKrKKKRRKKRkkKKR.RHKK.....KR
53 53 A L E +B 47 0A 55 58 29 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMLLLLLLLQQL.LLLG.....PL
54 54 A F E -B 46 0A 76 63 30 FFFFFFFFFFFFFFFFFFFFFFFFFFFFVFSFFFFFFFFIYYYYYSCYFFYYYYYFFFA.YCY
55 55 A Q E +B 45 0A 80 64 63 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEENDEHQEIIEIEEEARRADVLE
56 56 A Y E +B 44 0A 52 64 46 YYYYYYYYYYYYYYYYYYYYYYYYYYYFYYYYYYYYYYYYYYFHFFYLEEYSYYFFTTTYFTY
57 57 A A > - 0 0 30 64 45 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAASASSSAAACSSAAAAPAACGEEACDVA
58 58 A S T 3 S+ 0 0 30 63 42 SSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNNsNsgSThhsssssSeekspgS
59 59 A T T 3 S- 0 0 20 61 71 TTTTTTTT TTTTTTTTTTTTTTTTTTSTSTTTTTTTSRSPNsTyrK.cctsmmq.nnetktS
60 60 A D X> - 0 0 104 62 59 DDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDPNGRSRD.TTGSGGSPDESSDVS
61 61 A M H 3> S+ 0 0 2 62 53 MMMMMMMM MMMMMMMMMMMMMMMMMMMIMMMMMMMMMMMSIMSMII.IIMLMMMSKKKWTMI
62 62 A D H 3> S+ 0 0 108 62 60 DDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDTRREDLED.EEPIPPTTKKESNEE
63 63 A K H <> S+ 0 0 54 62 67 KKKKKKKK KKKKKKKKKKKKKKKN KKKSKRKKKKAQKTSSALKDLKSSSKSSKDKQGERRD
64 64 A V H X S+ 0 0 9 62 53 VVVVVVVV VVVVVVVVVVVVVVIV VVIIVVVVVVIILLVTISTVLGVVIIIITAYYVLALT
65 65 A L H X S+ 0 0 48 62 39 LLLLLLLL LLLLLLLLLLLLLLLL LLLLLLLLLLLILMFILLLLLLRRILIILVLLLITAY
66 66 A L H X S+ 0 0 118 62 84 LLLLLLLL LLLLLLLLLLLLLLLL LLLLLLLLLLQMINLEESETTFDDHDHHDLLLAQESD
67 67 A K H >X S+ 0 0 80 62 57 KKKKKKKK KKKKKKKKKKKKKKKK KKKRKKKKKKRKRQPRRSRRKRVVKKKKKGTTRRSLR
68 68 A Y H 3X S+ 0 0 22 62 43 YYYYYYYY YYYYYYYYYYYYYYYY YYYYYYYYYYYYYFFYYLYYFLIIYYYYYYPPYYRSY
69 69 A T H 3< S+ 0 0 68 58 79 TTTTTTTT TTTTTTTTTTTTTTTT TTTTATTTTTSATNTKQYQI SEE QQ AKKRENVQ
70 70 A E H X< S+ 0 0 95 57 61 EEEEEEEE EEEEEEEEEEEEEEEE EEEQEEEEEEKQDE KEIKN HRR SS GDDERKDA
71 71 A Y H 3< S+ 0 0 128 53 57 YYYYYYYY YYYYYYYYYYYYYYYY YH FYHYYYY FN AYCL VYY AA YYYLESYF
72 72 A N T 3< S+ 0 0 100 52 74 NNNNNNNN NNNNNNNNNNNNNNNN SN NNSNNNN RT K NP VKK QQ GPPDRQRG
73 73 A E < 0 0 132 50 32 EEEEEEEE EEEEEEEEEEEEEEEE DN DQDEEEE DD Q E EQQ EE EKK EEEG
74 74 A P 0 0 179 39 32 PPPPPPPP PPPPPPPPPPPPPPPP PP PPPPPPP P A SP A
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 93 7 0 0 0 0 0 0 0 0 0 0 0 60 0 0 0.245 8 0.90
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 2 0 0 0 0 62 0 0 0.083 2 0.98
3 3 A 2 0 0 0 0 0 0 24 0 0 0 0 0 0 8 63 2 0 2 0 62 0 0 1.038 34 0.28
4 4 A 0 0 0 0 0 0 0 0 0 2 0 0 0 0 6 92 0 0 0 0 62 0 0 0.321 10 0.87
5 5 A 8 8 81 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 62 0 0 0.713 23 0.76
6 6 A 6 0 0 0 0 0 0 0 2 2 6 2 0 0 5 5 53 18 2 0 62 0 0 1.555 51 0.30
7 7 A 3 5 87 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 62 0 0 0.555 18 0.81
8 8 A 0 0 0 0 0 0 0 2 3 0 18 26 0 0 11 19 15 6 0 0 62 0 0 1.855 61 0.23
9 9 A 0 3 0 0 0 0 0 2 0 5 0 0 0 0 76 11 3 0 0 0 63 0 0 0.881 29 0.63
10 10 A 2 2 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.163 5 0.96
11 11 A 0 2 0 25 0 0 0 10 0 3 3 19 0 0 0 5 2 27 0 5 63 0 0 1.882 62 0.19
12 12 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 5 0 0 19 73 63 0 0 0.800 26 0.60
13 13 A 0 3 0 5 0 0 0 2 2 2 5 0 0 0 10 3 0 63 2 5 63 0 0 1.429 47 0.25
14 14 A 2 0 3 0 0 0 0 2 0 0 6 14 0 0 68 0 3 2 0 0 63 0 0 1.130 37 0.25
15 15 A 2 2 0 0 0 0 0 0 2 0 11 2 0 2 0 0 3 2 76 0 63 0 0 0.955 31 0.48
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 5 0 0 0 0 63 0 0 0.191 6 0.96
17 17 A 0 2 0 0 0 0 0 0 2 0 0 0 0 0 2 0 92 0 3 0 63 0 0 0.383 12 0.80
18 18 A 81 0 3 0 0 0 2 2 5 0 2 6 0 0 0 0 0 0 0 0 64 0 0 0.789 26 0.63
19 19 A 0 0 0 0 0 0 0 0 0 0 5 92 0 0 2 2 0 0 0 0 64 0 6 0.348 11 0.85
20 20 A 0 0 0 0 97 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.139 4 0.99
21 21 A 0 3 0 0 0 0 0 2 6 0 17 61 5 3 0 2 2 0 0 0 64 0 0 1.333 44 0.27
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 2 0 0 0 64 0 0 0.080 2 0.96
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 64 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 78 0 0 0 0 64 0 0 0.525 17 0.77
25 25 A 0 0 3 2 58 0 2 3 0 0 6 2 0 5 2 0 2 3 14 0 64 0 0 1.559 52 -0.01
26 26 A 0 0 0 0 0 0 0 98 0 0 0 2 0 0 0 0 0 0 0 0 64 0 0 0.080 2 0.96
27 27 A 0 97 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.139 4 0.95
28 28 A 0 19 5 70 3 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 64 0 0 0.943 31 0.73
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 64 0 0 0.080 2 0.97
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 64 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.000 0 1.00
32 32 A 0 0 0 5 2 0 72 0 0 0 2 0 2 5 5 6 0 0 3 0 64 0 0 1.144 38 0.29
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 2 64 0 0 0.080 2 0.98
34 34 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.080 2 0.98
35 35 A 0 0 0 0 0 0 0 2 16 0 81 0 0 2 0 0 0 0 0 0 64 0 0 0.589 19 0.63
36 36 A 75 2 20 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 64 0 0 0.713 23 0.77
37 37 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 0 2 0 0 2 97 0 0 0 0 0 0 0 64 0 0 0.161 5 0.94
39 39 A 0 0 0 0 0 0 0 9 0 0 0 0 0 0 2 0 0 2 2 86 64 0 0 0.547 18 0.79
40 40 A 11 0 2 0 0 0 0 0 20 0 0 2 64 0 0 0 0 0 0 2 64 0 0 1.046 34 0.34
41 41 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 14 75 0 8 64 0 0 0.821 27 0.68
42 42 A 25 5 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.738 24 0.80
43 43 A 0 2 0 0 0 0 3 9 83 0 3 0 0 0 0 0 0 0 0 0 64 0 1 0.660 22 0.63
44 44 A 9 83 2 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.652 21 0.85
45 45 A 13 3 80 0 2 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 64 0 0 0.744 24 0.75
46 46 A 25 0 67 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.866 28 0.75
47 47 A 0 0 3 0 91 0 0 0 2 0 2 0 0 0 0 0 0 0 3 0 64 0 0 0.436 14 0.71
48 48 A 0 0 0 0 0 0 0 2 0 3 31 2 0 0 0 0 0 2 58 3 64 1 7 1.092 36 0.37
49 49 A 0 2 0 2 0 0 0 6 3 8 56 2 2 11 2 0 0 2 6 0 63 0 0 1.626 54 0.32
50 50 A 0 0 3 0 0 0 0 0 19 0 34 30 0 0 5 2 0 0 8 0 64 0 0 1.557 51 0.31
51 51 A 0 0 0 0 0 0 0 27 0 0 2 0 0 5 0 0 2 2 63 2 64 6 3 1.049 35 0.42
52 52 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 12 86 0 0 0 0 58 0 0 0.453 15 0.80
53 53 A 0 90 0 3 0 0 0 2 0 2 0 0 0 0 0 0 3 0 0 0 58 0 0 0.470 15 0.71
54 54 A 2 0 2 0 68 0 21 0 2 0 3 0 3 0 0 0 0 0 0 0 63 0 0 1.003 33 0.70
55 55 A 2 2 5 0 0 0 0 0 3 0 0 0 0 2 3 0 66 14 2 3 64 0 0 1.281 42 0.36
56 56 A 0 2 0 0 11 0 75 0 0 0 2 6 0 2 0 0 0 3 0 0 64 0 0 0.934 31 0.53
57 57 A 2 0 0 0 0 0 0 2 75 2 9 2 5 0 0 0 0 3 0 2 64 0 0 1.014 33 0.54
58 58 A 0 0 0 0 0 0 0 3 0 2 81 2 0 3 0 2 0 3 5 0 63 2 16 0.842 28 0.57
59 59 A 0 0 0 3 0 0 2 0 0 2 11 64 3 0 3 3 2 2 5 0 61 0 0 1.400 46 0.29
60 60 A 2 0 0 0 0 0 0 6 0 3 10 3 0 0 3 0 0 2 2 69 62 0 0 1.189 39 0.40
61 61 A 0 2 11 74 0 2 0 0 0 0 5 2 0 0 0 5 0 0 0 0 62 0 0 0.961 32 0.47
62 62 A 0 2 2 0 0 0 0 0 0 5 2 5 0 0 3 3 0 11 2 66 62 0 0 1.301 43 0.40
63 63 A 0 3 0 0 0 0 0 2 3 0 13 2 0 0 5 61 3 2 2 5 62 0 0 1.456 48 0.32
64 64 A 60 8 16 0 0 0 3 2 3 0 2 6 0 0 0 0 0 0 0 0 62 0 0 1.337 44 0.46
65 65 A 2 77 10 2 2 0 2 0 2 0 0 2 0 0 3 0 0 0 0 0 62 0 0 0.934 31 0.61
66 66 A 0 63 2 2 2 0 0 0 2 0 3 3 0 5 0 0 3 6 2 8 62 0 0 1.483 49 0.15
67 67 A 3 2 0 0 0 0 0 2 0 2 3 3 0 0 18 66 2 0 0 0 62 0 0 1.179 39 0.43
68 68 A 0 3 3 0 5 0 82 0 0 3 2 0 0 0 2 0 0 0 0 0 62 0 0 0.773 25 0.57
69 69 A 2 0 2 0 0 0 2 0 5 0 3 62 0 0 2 5 9 5 3 0 58 0 0 1.479 49 0.20
70 70 A 0 0 2 0 0 0 0 2 2 0 4 0 0 2 5 7 4 65 2 7 57 0 0 1.398 46 0.38
71 71 A 2 4 0 0 6 0 72 0 6 0 2 0 2 4 0 0 0 2 2 0 53 0 0 1.186 39 0.42
72 72 A 2 0 0 0 0 0 0 4 0 6 4 2 0 0 6 6 6 0 63 2 52 0 0 1.425 47 0.26
73 73 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 4 8 74 2 10 50 0 0 0.940 31 0.67
74 74 A 0 0 0 0 0 0 0 0 5 92 3 0 0 0 0 0 0 0 0 0 39 0 0 0.320 10 0.67
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
33 20 24 9 sGEELSFQVTf
34 20 24 14 tSGHKGQYFCLRQVTf
35 20 21 17 sTTPDSGIALEFGQPLVTf
36 20 21 17 sTTPDSGIHLDSLWSRVTf
38 52 53 1 nDr
43 59 60 1 sSs
45 59 60 6 sSSRVTLy
46 59 60 1 gKr
47 49 50 5 gAPTQTc
47 52 58 1 qGk
48 51 52 1 hGk
49 59 60 5 hGNNAEc
50 59 60 5 hGNNAEc
51 59 60 6 sSTTSASt
52 49 50 4 sSTGKm
52 57 62 6 sTTSPSSs
53 59 64 6 sSTTTTTm
54 59 60 6 sSTTTTTm
55 20 21 21 tFAKRRNGLLKKAXLCFSSKVTf
55 59 81 1 sTq
57 49 50 4 dLQGNa
57 57 62 6 eLNQIENn
58 49 50 4 dLQGNa
58 57 62 6 eLNQIENn
59 49 50 5 pADGEGg
59 57 63 6 kAEADVWe
60 43 46 2 sLGl
60 48 53 4 sSTGKl
60 55 64 2 sPNt
61 49 50 3 eSEKg
61 57 61 6 pTEPQPSk
62 59 60 6 gQNKNLLt
63 19 62 21 rFSKRRSGLFKXIEDRTSRQVRf
//