Complet list of 1c6w hssp file
Complete list of 1c6w.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1C6W
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER TOXIN 23-DEC-99 1C6W
COMPND MOL_ID: 1; MOLECULE: MAUROCALCIN; CHAIN: A; SYNONYM: MCA; ENGINEERED:
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY
AUTHOR A.MOSBAH,R.KHARRAT,Z.FAJLOUN,J.-G.RENISIO,E.BLANC,J.- M.SABATIER,M.AYE
DBREF 1C6W A 1 33 PDB 1C6W 1C6W 1 33
SEQLENGTH 33
NCHAIN 1 chain(s) in 1C6W data set
NALIGN 6
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : SCXC_SCOMA 1C6W 1.00 1.00 1 33 1 33 33 0 0 33 P60254 Maurocalcin OS=Scorpio maurus palmatus PE=1 SV=1
2 : L0GBR1_9SCOR 0.91 0.91 2 33 37 68 32 0 0 68 L0GBR1 Putative calcium-channel toxin 20 (Precursor) OS=Urodacus yaschenkoi PE=4 SV=1
3 : SCX1_OPICA 0.91 0.94 1 33 34 66 33 0 0 66 P60252 Opicalcin-1 OS=Opistophthalmus carinatus PE=3 SV=1
4 : SCX2_OPICA 0.88 0.94 1 33 34 66 33 0 0 66 P60253 Opicalcin-2 OS=Opistophthalmus carinatus PE=3 SV=1
5 : IPTXA_PANIM 1IE6 0.82 0.91 1 33 1 33 33 0 0 33 P59868 Imperatoxin-A OS=Pandinus imperator PE=1 SV=1
6 : SCXC_HADGE 0.78 0.88 2 33 43 74 32 0 0 74 B8QG00 Hadrucalcin OS=Hadrurus gertschi PE=1 SV=1
## ALIGNMENTS 1 - 6
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 118 5 0 G GGG
2 2 A D + 0 0 52 7 0 DDDDDD
3 3 A a - 0 0 103 7 0 CCCCCC
4 4 A L - 0 0 62 7 19 LLLLLI
5 5 A P S S+ 0 0 113 7 56 PKPPPK
6 6 A H S S- 0 0 115 7 31 HKHHHH
7 7 A L - 0 0 55 7 0 LLLLLL
8 8 A K - 0 0 87 7 30 KKKKKQ
9 9 A L E +A 31 0A 93 7 81 LLRRRR
10 10 A b E -A 30 0A 2 7 0 CCCCCC
11 11 A K S S+ 0 0 141 7 19 KKKKKR
12 12 A E S > S- 0 0 101 7 29 EEEEAE
13 13 A N G > S+ 0 0 70 7 19 NNNNDN
14 14 A K G 3 S+ 0 0 121 7 47 KKNNNK
15 15 A D G < S+ 0 0 45 7 0 DDDDDD
16 16 A c S X S- 0 0 4 7 0 CCCCCC
17 17 A a T 3 S+ 0 0 47 7 0 CCCCCC
18 18 A S T 3 S- 0 0 82 7 21 SSSSGS
19 19 A K < + 0 0 110 7 0 KKKKKK
20 20 A K + 0 0 123 7 28 KSKKKK
21 21 A b E -B 32 0A 4 7 0 CCCCCC
22 22 A K E -B 31 0A 118 7 36 KKKKKS
23 23 A R + 0 0 116 7 0 RRRRRR
24 24 A R + 0 0 230 7 0 RRRRRR
25 25 A G S S- 0 0 49 7 0 GGGGGG
26 26 A T S S+ 0 0 134 7 18 TTTATT
27 27 A N S S- 0 0 92 7 0 NNNNNN
28 28 A I S S+ 0 0 105 7 81 IIPPAP
29 29 A E - 0 0 75 7 0 EEEEEE
30 30 A K E -A 10 0A 27 7 0 KKKKKK
31 31 A R E -AB 9 22A 82 7 0 RRRRRR
32 32 A c E B 0 21A 10 7 0 CCCCCC
33 33 A R 0 0 171 7 0 RRRRRR
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 7 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
4 4 A 0 86 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.410 13 0.81
5 5 A 0 0 0 0 0 0 0 0 0 71 0 0 0 0 0 29 0 0 0 0 7 0 0 0.598 19 0.44
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 86 0 14 0 0 0 0 7 0 0 0.410 13 0.69
7 7 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 14 0 0 0 7 0 0 0.410 13 0.69
9 9 A 0 43 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0 0 0 7 0 0 0.683 22 0.19
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 86 0 0 0 0 7 0 0 0.410 13 0.81
12 12 A 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 86 0 0 7 0 0 0.410 13 0.71
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 14 7 0 0 0.410 13 0.81
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 43 0 7 0 0 0.683 22 0.52
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 7 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 14 0 0 86 0 0 0 0 0 0 0 0 0 7 0 0 0.410 13 0.78
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 7 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 86 0 0 0 0 7 0 0 0.410 13 0.71
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 86 0 0 0 0 7 0 0 0.410 13 0.64
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 7 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 7 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 14 0 0 86 0 0 0 0 0 0 0 0 7 0 0 0.410 13 0.81
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 7 0 0 0.000 0 1.00
28 28 A 0 0 43 0 0 0 0 0 14 43 0 0 0 0 0 0 0 0 0 0 7 0 0 1.004 33 0.18
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 7 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 7 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 7 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 7 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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