Complet list of 1c3y hssp file
Complete list of 1c3y.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1C3Y
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-03
HEADER ANTIFREEZE PROTEIN 10-JUL-99 1C3Y
COMPND MOL_ID: 1; MOLECULE: THP12 CARRIER PROTEIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: TENEBRIO MOLITOR; ORGANISM_COMMON: YEL
AUTHOR F.D.SOENNICHSEN
DBREF 1C3Y A 1 108 UNP Q27011 Q27011_TENMO 19 126
SEQLENGTH 108
NCHAIN 1 chain(s) in 1C3Y data set
NALIGN 41
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : Q27011_TENMO1C3Y 1.00 1.00 1 108 19 126 108 0 0 126 Q27011 12 kDa hemolymph protein (Precursor) OS=Tenebrio molitor GN=THP12 PE=1 SV=1
2 : Q7YWD7_TENMO 0.98 0.99 1 108 19 126 108 0 0 126 Q7YWD7 12 kDa hemolymph protein b (Precursor) OS=Tenebrio molitor PE=2 SV=1
3 : Q7YWD6_TENMO 0.75 0.92 1 108 19 126 108 0 0 126 Q7YWD6 12 kDa hemolymph protein c (Precursor) OS=Tenebrio molitor PE=2 SV=1
4 : Q7YWD5_TENMO 0.74 0.91 1 108 19 126 108 0 0 126 Q7YWD5 12 kDa hemolymph protein d (Precursor) OS=Tenebrio molitor PE=2 SV=1
5 : Q7YWD4_TENMO 0.71 0.88 1 108 15 122 108 0 0 123 Q7YWD4 12 kDa hemolymph protein e (Precursor) OS=Tenebrio molitor PE=2 SV=1
6 : Q7YWD3_TENMO 0.67 0.87 1 108 19 126 108 0 0 133 Q7YWD3 12 kDa hemolymph protein f (Precursor) OS=Tenebrio molitor PE=2 SV=1
7 : D6X4H5_TRICA 0.62 0.85 1 107 19 125 107 0 0 129 D6X4H5 Odorant binding protein C12 OS=Tribolium castaneum GN=OBP-C12 PE=4 SV=1
8 : D6WS38_TRICA 0.40 0.71 1 108 19 126 108 0 0 132 D6WS38 Odorant binding protein (Subfamily minus-C) C04 OS=Tribolium castaneum GN=OBP-C04 PE=4 SV=1
9 : D6WS44_TRICA 0.39 0.72 2 108 20 126 107 0 0 132 D6WS44 Odorant binding protein C03 (Fragment) OS=Tribolium castaneum GN=OBP-C03 PE=4 SV=1
10 : Q7YWC9_TENMO 0.39 0.72 1 108 18 126 109 1 1 131 Q7YWC9 13 kDa hemolymph protein d (Precursor) OS=Tenebrio molitor PE=2 SV=1
11 : D6X4H7_TRICA 0.38 0.64 1 102 24 125 102 0 0 132 D6X4H7 Odorant binding protein C13 OS=Tribolium castaneum GN=OBP-C13 PE=4 SV=1
12 : Q7YWD2_TENMO 0.38 0.69 1 108 7 113 108 1 1 119 Q7YWD2 13 kDa hemolymph protein a (Precursor) OS=Tenebrio molitor PE=2 SV=1
13 : B1_TENMO 0.37 0.66 1 108 15 122 108 0 0 130 Q27017 B1 protein (Fragment) OS=Tenebrio molitor PE=2 SV=1
14 : D6WS43_TRICA 0.37 0.71 1 108 21 128 108 0 0 134 D6WS43 Odorant binding protein C02 OS=Tribolium castaneum GN=OBP-C02 PE=4 SV=1
15 : B2_TENMO 0.36 0.64 1 108 13 120 108 0 0 128 Q27018 B2 protein (Fragment) OS=Tenebrio molitor PE=2 SV=1
16 : D6WPR7_TRICA 0.36 0.72 1 108 21 129 109 1 1 134 D6WPR7 Odorant binding protein C14 OS=Tribolium castaneum GN=OBP-C14 PE=4 SV=1
17 : M3VHC0_IPSTY 0.36 0.61 1 108 21 129 109 1 1 133 M3VHC0 Odorant binding protein 7 OS=Ips typographus GN=ItypOBP7 PE=2 SV=1
18 : D2A053_TRICA 0.35 0.60 1 108 20 126 108 1 1 134 D2A053 Odorant binding protein C15 OS=Tribolium castaneum GN=OBP-C15 PE=4 SV=1
19 : D6WS40_TRICA 0.35 0.68 13 106 32 125 94 0 0 132 D6WS40 Odorant binding protein C09 OS=Tribolium castaneum GN=OBP-C09 PE=4 SV=1
20 : D6X4H4_TRICA 0.35 0.66 2 108 23 129 107 0 0 133 D6X4H4 Odorant binding protein C11 OS=Tribolium castaneum GN=OBP-C11 PE=4 SV=1
21 : D6X4H6_TRICA 0.35 0.60 1 106 21 125 106 1 1 127 D6X4H6 Odorant binding protein C10 OS=Tribolium castaneum GN=OBP-C10 PE=4 SV=1
22 : N6UHS9_DENPD 0.35 0.59 1 108 268 375 108 0 0 500 N6UHS9 Uncharacterized protein (Fragment) OS=Dendroctonus ponderosae GN=D910_09799 PE=4 SV=1
23 : D6WS42_TRICA 0.34 0.69 2 108 20 126 107 0 0 132 D6WS42 Odorant binding protein (Subfamily minus-C) C01 OS=Tribolium castaneum GN=OBP-C01 PE=4 SV=1
24 : M4W9B7_DENPD 0.34 0.51 1 106 21 127 107 1 1 133 M4W9B7 Odorant-binding protein 30 OS=Dendroctonus ponderosae GN=OBP30 PE=2 SV=1
25 : N6U934_DENPD 0.34 0.60 7 105 1 99 99 0 0 112 N6U934 Uncharacterized protein (Fragment) OS=Dendroctonus ponderosae GN=YQE_05357 PE=4 SV=1
26 : Q7YWD0_TENMO 0.34 0.69 1 108 16 124 109 1 1 129 Q7YWD0 13 kDa hemolymph protein c (Precursor) OS=Tenebrio molitor PE=2 SV=1
27 : Q7YWD1_TENMO 0.34 0.70 1 108 18 126 109 1 1 131 Q7YWD1 13 kDa hemolymph protein b (Precursor) OS=Tenebrio molitor PE=2 SV=1
28 : V5GGB8_ANOGL 0.34 0.56 2 108 34 140 107 0 0 144 V5GGB8 B2 protein (Fragment) OS=Anoplophora glabripennis GN=B2 PE=4 SV=1
29 : D2A055_TRICA 0.33 0.63 5 107 27 128 103 1 1 130 D2A055 Odorant binding protein C16 OS=Tribolium castaneum GN=OBP-C16 PE=4 SV=1
30 : M3TYY8_IPSTY 0.33 0.61 1 108 23 130 108 0 0 136 M3TYY8 Odorant binding protein 4 OS=Ips typographus GN=ItypOBP4 PE=2 SV=1
31 : D2A056_TRICA 0.32 0.54 5 107 24 126 104 2 2 129 D2A056 Odorant binding protein C17 OS=Tribolium castaneum GN=OBP-C17 PE=4 SV=1
32 : M4VUX7_DENPD 0.32 0.57 1 106 33 138 106 0 0 141 M4VUX7 Odorant-binding protein 19 OS=Dendroctonus ponderosae GN=OBP19 PE=2 SV=1
33 : U4UJ82_DENPD 0.32 0.57 1 106 33 138 106 0 0 141 U4UJ82 Uncharacterized protein OS=Dendroctonus ponderosae GN=D910_09806 PE=4 SV=1
34 : V5G504_ANOGL 0.32 0.62 1 106 15 122 108 1 2 128 V5G504 B1 protein (Fragment) OS=Anoplophora glabripennis GN=B1 PE=4 SV=1
35 : D4P8G5_9CUCU 0.31 0.60 1 106 20 125 108 2 4 133 D4P8G5 Minus-C odorant binding protein 4 OS=Batocera horsfieldi PE=2 SV=1
36 : D6WS47_TRICA 0.31 0.57 14 102 36 124 90 2 2 135 D6WS47 Odorant binding protein C06 OS=Tribolium castaneum GN=OBP-C06 PE=4 SV=1
37 : M4VTJ0_DENPD 0.31 0.59 1 108 23 130 108 0 0 136 M4VTJ0 Odorant-binding protein 29 OS=Dendroctonus ponderosae GN=OBP29 PE=2 SV=1
38 : R9PSN6_DENPD 0.31 0.59 1 108 23 130 108 0 0 136 R9PSN6 Odorant binding protein onOBP7 OS=Dendroctonus ponderosae PE=2 SV=1
39 : U4UHI4_DENPD 0.31 0.60 1 108 178 285 108 0 0 429 U4UHI4 Uncharacterized protein OS=Dendroctonus ponderosae GN=D910_09800 PE=4 SV=1
40 : M3TYZ1_IPSTY 0.30 0.56 1 107 25 130 107 1 1 144 M3TYZ1 Odorant binding protein 14 OS=Ips typographus GN=ItypOBP14 PE=2 SV=1
41 : Q28YE8_DROPS 0.30 0.57 1 108 21 128 110 4 4 130 Q28YE8 Odorant-binding protein 56e OS=Drosophila pseudoobscura pseudoobscura GN=Obp56e PE=4 SV=2
## ALIGNMENTS 1 - 41
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 236 33 29 EEDDDEED DDDEEEEDE DE D DD Q GGDS EEEED
2 2 A T - 0 0 122 37 53 TTTTITTEEEEEEQEEKD EKEEK EEE Q DDEE EEEET
3 3 A P - 0 0 110 37 50 PPGGRPAQQQEQDQDQQN DDAQQ QQQ Q QQEE QQQQQ
4 4 A R - 0 0 168 37 68 RRRRRQKKKKKILTLKKV TPAIK KKL K RRRE KKKRK
5 5 A E S S+ 0 0 138 39 50 EEDDEQEEEAEQEEQNEG DQKDE AAKEDDEEEK QQQKA
6 6 A K S S+ 0 0 139 39 50 KKKRKKKKKKKKLKLNLK KDEKL NNKNKDKKKK KKKKE
7 7 A L S S+ 0 0 170 40 51 LLVVVLLILWMRLLLWLI LVILLMWWLVLFAAFL IIIIL
8 8 A K S S+ 0 0 163 40 78 KKRRQRRKDKKNRNRRAE EAIETRKKKQLKIVKQ VVVIK
9 9 A Q S S- 0 0 116 40 70 QQEQEQKNKKKKQQQKQS VKAPQAKKDSAKSSAE AAAQE
10 10 A H S S+ 0 0 106 40 89 HHYYYYYYIWWITLTWHV MWHIHIWWHIDVIILI NNNNR
11 11 A S > + 0 0 34 40 80 SSSSSSSHSRTSSSSSYE IQGSYHSSREGQFFHH GGGRA
12 12 A D T 4 S+ 0 0 100 40 56 DDDDDDDKKEQKAKANKK NKRKNEDDEEKKKKND KKKQK
13 13 A A T > S+ 0 0 67 41 54 AAAAIAEEEEEEEEEEEKAEEAEQGEENDADEEEK AAADA
14 14 A a H > S+ 0 0 29 42 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
15 15 A K H < S+ 0 0 146 42 81 KKKKKLKSKRIQKRKKLQLKFIRVMRRIQVQMMQQLVVVIA
16 16 A A H 4 S+ 0 0 79 42 66 AAAATSSANQQQTATVAEETEKEAKEEKKAKAAAAEAAAQG
17 17 A E H < S+ 0 0 144 42 63 EEEEEVVVQEEVELELKKQKAELIEEEEEEKEEDDTDDDEQ
18 18 A S < + 0 0 12 42 52 SSTSSSSSSTSSSTSISTSTSTNSTTTSTTTTTppsTTTTE
19 19 A G + 0 0 38 42 36 GGGGGGGGGGGGGGGGKGKGGGGKGGGGGGGGGhyvGGGKG
20 20 A V > - 0 0 7 42 36 VVIVVVVVVVVVVVAVVVVVVIIVAVVAVVVAAIVDAAAVV
21 21 A S T 3 - 0 0 87 42 49 SSSSSSSSSSTSSSSSNSSPSDSDDSSDSSSTTDDSDDDNT
22 22 A E T 3 S+ 0 0 148 42 64 EEEDEQEQQESQEQEQEESDMREQQPPPDTDHHEHEPPPPK
23 23 A E S <> S+ 0 0 127 42 25 EEEEEEEDEEEEDEAEAEEDEEDAAEEEEDEEEEEREEEEE
24 24 A S H > S+ 0 0 4 42 79 SSTSSSLVLAITVTVATSSISITVLGGVSLSMMSLALLLLQ
25 25 A L H > S+ 0 0 38 42 31 LLLLLLLIIILIIIIILLILMLILIIIVLIIMMLLLIIIIA
26 26 A N H >4 S+ 0 0 108 42 71 NNTNTRNTDNQDKTKNQQKQNELQHNNAQQNEEKHRKKKEL
27 27 A K H >< S+ 0 0 100 42 47 KKKKKKKKKrQKRNKkKKNKKKKKKqqKEAkKKKNTAAAKa
28 28 A V H 3< S+ 0 0 21 40 76 VVVAVVVAAvLVAAArAILALSVAArrALAnSSY..AAAAr
29 29 A R T << S+ 0 0 143 41 65 RRRRRRRRRSRRRRRNRMQRPRRRVTTRSRNVVI.ARRRDA
30 30 A N S < S- 0 0 64 42 74 NNNNNNNKTNNTKNKNIRINNERAKNNTEQLEEKLSQQQQG
31 31 A R S S+ 0 0 143 42 60 RRGGGRHGGQQGGGGEGLGGIGGGGHHGTGEGGGSGGGGGN
32 32 A E S S- 0 0 157 42 79 EEEEEEEEEFKVDNDFQENETIEDEFFNGKPDDEAIKKKEF
33 33 A E - 0 0 155 42 88 EEEEEHDFLDRLLFLDFEFKLFAFYDDIDFVIILNIFFFFE
34 34 A V + 0 0 47 42 77 VVVVVVVIIVVVEEESAVDISSVAVNNASTCPPLIDAAAID
35 35 A D + 0 0 125 42 40 DDDDDDHENVEDDEDVDDDDEENNDVVEDEDDDDDDDDDDA
36 36 A D > - 0 0 40 42 9 DDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDKNEDDDDD
37 37 A P H > S+ 0 0 66 42 53 PPPPPPPPPDPPPPPDDPEPPPPPPDDPPDLIISPPAAAQP
38 38 A K H > S+ 0 0 82 42 45 KKKKKKKKKKKKKKKKKLRKKIKNKKKKLKLVVVKKKKKAK
39 39 A L H > S+ 0 0 7 42 25 LLVLLLLFLILMLLLILVLLLYLLLIILVLLFFVVLLLLLV
40 40 A K H X S+ 0 0 72 42 31 KKKKKWDKKKKKKKKKKKKRGKKKKKKQKKQKKGGKKKKKK
41 41 A E H X S+ 0 0 63 42 69 EEEEDEEEAAEKMLMKEEEEEENTNAAEKAENNSAEAADCC
42 42 A H H >X S+ 0 0 55 42 66 HHQHHHHHQHYHQQQHHNYHNFHHQQQHNFNHHYHFFFFFF
43 43 A A H >X S+ 0 0 10 42 70 AAAAAAGLIGTVLVLGIALAATVIISSLASALLAMLAAATA
44 44 A F H 3X S+ 0 0 30 42 36 FFFFFVFFYLFLLLLLLLFLFFLKFLLLLFLVVFLFLLLKN
45 45 A a H S+ 0 0 9 42 82 LLLLLVLSSGFSFGFAALSMLGSSTGGFLSLGGSSNSSSYL
48 48 A K H ><5S+ 0 0 87 42 26 KKKKKQKKKKKKKKKKQKKKKKKEQRRKKKKKKKKKKKKLE
49 49 A R H 3<5S+ 0 0 145 42 43 RRKKKKKKKKKKAKAKKANKKQKKKKKRARTKKKAQKKKKK
50 50 A A H 3<5S- 0 0 40 42 80 AASSSGAAAANTLVLAIYASLATIISSIYLYSSVVNIIIAA
51 51 A G T <<5S+ 0 0 42 42 17 GGGGGEGGGGGGEGESGGGEGGGGGGGGGGEGGGGGGGGGG
52 52 A F S - 0 0 59 41 50 DDDDDDNNTSNTANADNDDNSNSGDNNSDNDDDNKDNNNN.
55 55 A A T 3 S+ 0 0 78 42 52 AAAAASEEEEEEEEESSDPDEEETEEEQDDEEEEPDEEEDV
56 56 A S T 3 S- 0 0 87 42 61 SSSSSNAAASDASSSSADAADATDSAAEQAENNENAAAAED
57 57 A G < + 0 0 25 42 2 GGGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGG
58 58 A E - 0 0 98 42 53 EEEEEDDDEDKDEQENQNHETDEKEDDKEDKLLKENEEEEQ
59 59 A F - 0 0 86 42 47 FFFFFFIFIILTIIIIFILMLVTFIVVIIIIHHILFIIIVI
60 60 A Q >> + 0 0 93 42 79 QQQQQLLQNLQNEDEIQFQQLLNRMLLQSQCSSNDVQQQQK
61 61 A L H 3> S+ 0 0 48 42 89 LLVVVVAEMIYVAEAINPHMIKVRKAARETPKKKLKSSSKP
62 62 A D H 3> S+ 0 0 114 42 22 DDEEEDDEDDDEDNDNQDEDEDEDDDDDDEDEEENDDDDDD
63 63 A H H <> S+ 0 0 90 42 81 HHHHTNTVNQVVTVTQVKMKKVVVLKQVKVKKKNVAVVVVV
64 64 A I H X S+ 0 0 10 42 36 IIIMIIIILTILFLFIIFIILLLITIILLVLLLLIVVVVVV
65 65 A K H X S+ 0 0 89 42 50 KKKKKKKRKKKKKKKKEERRRKREVKKREKMKKKKRQQQEL
66 66 A T H X S+ 0 0 69 42 78 TTTTKTTKTISAEAEITELATETKKIIREQEEEKQKQQQAA
67 67 A K H < S+ 0 0 87 42 25 KKKKKKKKKKTKKKKKKKRRSKKKKKKKKKVKKAKRKKKKK
68 68 A F H < S+ 0 0 66 42 17 FFLLFFLLLLLLLLLLLLFILSLLLLLLLLLLLLIILLLLL
69 69 A K H < S+ 0 0 78 41 70 KKKKKKKNKKMKTRTKRKKKKLRKTKKVEG.TTGSEGGGPG
70 70 A E S < S+ 0 0 115 42 80 EEEEEQEAKKKHRKRREPGHNKKEERRDPGELLRLHSSSPP
71 71 A N S S+ 0 0 164 42 79 NNVVIDNEVVVVVVVVAEGAQLVTKVVVDAPLLNTPAAAQI
72 72 A S - 0 0 61 42 83 SSSSSYSLASSATSTILIRVWFSIFAAIRLKLLIVLIIIAA
73 73 A E S S+ 0 0 169 41 76 EEEEEDENAAGSNDNEK.YSGNEPKVVKGGFGGSSLGGGDG
74 74 A H > + 0 0 129 42 59 HHHHHHHDNDSDDNDDgGSNDDNgNDDDKDGDDDDTDDDKV
75 75 A P T 3 + 0 0 73 37 69 PPPPPPPLDDE.DDDDaADE.PDnEDDE.LKEEEKDNNN..
76 76 A E T 3 S+ 0 0 113 42 45 EDEEEEDDDDEEEEEEADDAEADAKEEEEGEGGAAKEEEKD
77 77 A K S <> S+ 0 0 131 42 75 KKKKTKTAEEEEEEEEKETEILEKVEELEVKLLKKTAAAKK
78 78 A V H > S+ 0 0 16 42 60 VVVIIVVTVVAVSVSVTAIGAVVNIVVAAAAVVLVMAAAAV
79 79 A D H > S+ 0 0 63 42 54 DDDDDDDNNDNDENEDKKNTNQNANDDDEAEDDNEEKKKLN
80 80 A D H > S+ 0 0 100 42 61 DAAAADAKKRKKKKKRKRERKKSKAKKKKQKKKERIKKKEA
81 81 A L H X S+ 0 0 19 42 34 LLLLLLLLIIVIIIIILVVILLILAIILVLLIIALILLLIV
82 82 A V H X S+ 0 0 8 42 40 VVVVVVVIIIVVVYVVIALMVIIIVAAIAVILLVVVVVVVQ
83 83 A A H < S+ 0 0 64 42 65 AAAAAAEAQKKQENETSEQNNDQEENNGKTEDDNKNEEEDA
84 84 A K H < S+ 0 0 121 42 34 KKKKKKKKKKDKKKKKDKQEEQKTKKKESKKKKKEKKKKKK
85 85 A b H < S+ 0 0 7 42 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
86 86 A A < + 0 0 13 42 69 AAAAAANAVVVVTATTAAGAAIVVVVVVALTFFAATLLLAD
87 87 A V - 0 0 68 42 40 VVVVVVEVVVVVVVVIIVHVRVVVDVVVVVLMMVVRVVVVS
88 88 A K - 0 0 163 42 57 KKKKKKKKKKEKTKTRTKQKQKKAKKKEKPEEEEKKSSSKL
89 89 A K - 0 0 84 42 25 KKKKKKKKKKKKEKEKNKKKKKKNKKKAKKKKKKKRKKKGK
90 90 A D S S+ 0 0 133 42 57 DDAADDDDPDSADPDNPDDDSESKADDSDADGGDQEGGGKg
91 91 A T S > S- 0 0 48 42 40 TTTTTTTSTTTTTATTDSTTTTTDTTTTSTTTTDTTSSSDd
92 92 A P H > S+ 0 0 26 42 30 PPPPPLPPPPPPPPPPPPPPPPPPPPPSPPPPPPPGGGGAK
93 93 A Q H > S+ 0 0 74 42 51 QQQQEQQQEEQEEEEEKEQLQQEKSEEQEQQQQQEEEEECC
94 94 A H H >> S+ 0 0 54 42 51 HHEEENHQEEDEDEDELEEAEEELDEELEELDDDKEEEEEE
95 95 A S H 3X S+ 0 0 5 42 34 SSSSSTTTTTTTTTTTQTTTTTTQTTTTTTLTTTTTTTTTT
96 96 A S H >X S+ 0 0 0 42 33 SSSSSCAAAAAAAAATAAAAASAAAAAAAAAAAAAAAAAVS
97 97 A A H << S+ 0 0 6 42 61 AAKDFFSFFFFYFFFFFHFYHYFFFFFLHFHFFIVYIIIYY
98 98 A D H >X S+ 0 0 42 42 46 DDDNQEHEEQEDEEEENQQEEHENEEEEEEAEEANQQQQLE
99 99 A F H S+ 0 0 47 42 54 KKKRQKTKKKDKKKKRKWKCLVVKKKKKLRFKKKMKKKKKK
102 102 A b H 3< S+ 0 0 38 42 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
103 103 A V T 3< S+ 0 0 34 40 64 VVTTVILYLL IVVVLVAALILLLLLLFMYLCCFL YYYYY
104 104 A H T <4 S+ 0 0 94 40 86 HHRRHHVYHR YLMLRYTYIPYRYHRRFQYSHHRD YYYFY
105 105 A D >< + 0 0 57 40 65 DDDAKRDEAE DKKKEQEQRAKKTSEETQQVKKEK EEEEQ
106 106 A N T 3 + 0 0 97 39 53 NNNNKNKNNE SDNDNKENNKNVN QQKKNQEEQD NNNHN
107 107 A R T 3 0 0 194 32 63 RRRRKRKTKK KKKKSAN K SK KKTSTK TTTTR
108 108 A S < 0 0 160 28 50 SSSSSS PPP PPPPSSA N PP PPG P PPP A
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 6 0 0 3 0 0 0 0 0 3 45 0 42 33 0 0 1.104 36 0.71
2 2 A 0 0 3 0 0 0 0 0 0 0 0 22 0 0 0 8 5 54 0 8 37 0 0 1.326 44 0.47
3 3 A 0 0 0 0 0 0 0 5 5 11 0 0 0 0 3 0 54 8 3 11 37 0 0 1.528 51 0.50
4 4 A 3 8 5 0 0 0 0 0 3 3 0 5 0 0 27 41 3 3 0 0 37 0 0 1.727 57 0.32
5 5 A 0 0 0 0 0 0 0 3 10 0 0 0 0 0 0 10 18 41 3 15 39 0 0 1.617 53 0.49
6 6 A 0 10 0 0 0 0 0 0 0 0 0 0 0 0 3 67 0 5 10 5 39 0 0 1.136 37 0.49
7 7 A 13 43 17 5 5 10 0 0 5 0 0 0 0 0 3 0 0 0 0 0 40 0 0 1.700 56 0.48
8 8 A 10 3 8 0 0 0 0 0 5 0 0 3 0 0 20 30 8 8 5 3 40 0 0 2.072 69 0.22
9 9 A 3 0 0 0 0 0 0 0 17 3 10 0 0 0 0 25 28 10 3 3 40 0 0 1.836 61 0.29
10 10 A 5 5 20 3 0 15 15 0 0 0 0 5 0 17 3 0 0 0 10 3 40 0 0 2.152 71 0.11
11 11 A 0 0 3 0 5 0 5 13 3 0 43 3 0 10 8 0 5 5 0 0 40 0 0 1.924 64 0.19
12 12 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 3 40 5 10 10 28 40 0 0 1.574 52 0.43
13 13 A 0 0 2 0 0 0 0 2 32 0 0 0 0 0 0 5 2 46 2 7 41 0 0 1.422 47 0.46
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
15 15 A 12 10 10 7 2 0 0 0 2 0 2 0 0 0 12 29 14 0 0 0 42 0 0 2.046 68 0.19
16 16 A 2 0 0 0 0 0 0 2 40 0 5 10 0 0 0 12 10 17 2 0 42 0 0 1.778 59 0.33
17 17 A 10 7 2 0 0 0 0 0 2 0 0 2 0 0 0 10 7 48 0 12 42 0 0 1.699 56 0.36
18 18 A 0 0 2 0 0 0 0 0 0 5 45 43 0 0 0 0 0 2 2 0 42 0 3 1.134 37 0.48
19 19 A 2 0 0 0 0 0 2 83 0 0 0 0 0 2 0 10 0 0 0 0 42 0 0 0.643 21 0.64
20 20 A 69 0 10 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 2 42 0 0 0.885 29 0.63
21 21 A 0 0 0 0 0 0 0 0 0 2 62 10 0 0 0 0 0 0 5 21 42 0 0 1.085 36 0.50
22 22 A 0 0 0 2 0 0 0 0 0 17 5 2 0 7 2 2 19 33 0 10 42 0 0 1.894 63 0.35
23 23 A 0 0 0 0 0 0 0 0 10 0 0 0 0 0 2 0 0 76 0 12 42 0 0 0.773 25 0.74
24 24 A 12 21 7 5 0 0 0 5 7 0 29 12 0 0 0 0 2 0 0 0 42 0 0 1.951 65 0.21
25 25 A 2 43 45 7 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.088 36 0.69
26 26 A 0 5 0 0 0 0 0 0 2 0 0 10 0 5 5 17 17 10 26 5 42 0 0 2.065 68 0.29
27 27 A 0 0 0 0 0 0 0 0 12 0 0 2 0 0 5 64 7 2 7 0 42 2 6 1.237 41 0.52
28 28 A 25 10 3 0 0 0 3 0 40 0 8 0 0 0 10 0 0 0 3 0 40 0 0 1.645 54 0.23
29 29 A 7 0 2 2 0 0 0 0 5 2 5 5 0 0 61 0 2 0 5 2 41 0 0 1.535 51 0.34
30 30 A 0 5 5 0 0 0 0 2 2 0 2 7 0 0 5 12 12 10 38 0 42 0 0 1.989 66 0.26
31 31 A 0 2 2 0 0 0 0 62 0 0 2 2 0 7 10 0 5 5 2 0 42 0 0 1.444 48 0.40
32 32 A 2 0 5 0 12 0 0 2 2 2 0 2 0 0 0 12 2 38 7 12 42 0 0 1.995 66 0.21
33 33 A 2 14 10 0 26 0 2 0 2 0 0 0 0 2 2 2 0 19 2 14 42 0 0 2.070 69 0.12
34 34 A 33 2 12 0 0 0 0 0 14 5 10 2 2 0 0 0 0 7 5 7 42 0 0 2.055 68 0.23
35 35 A 10 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 17 7 62 42 0 0 1.186 39 0.59
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 5 2 90 42 0 0 0.414 13 0.90
37 37 A 0 2 5 0 0 0 0 0 7 64 2 0 0 0 0 0 2 2 0 14 42 0 0 1.251 41 0.47
38 38 A 7 7 2 0 0 0 0 0 2 0 0 0 0 0 2 76 0 0 2 0 42 0 0 0.940 31 0.55
39 39 A 14 64 10 2 7 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.152 38 0.74
40 40 A 0 0 0 0 0 2 0 7 0 0 0 0 0 0 2 81 5 0 0 2 42 0 0 0.772 25 0.69
41 41 A 0 2 0 5 0 0 0 0 19 0 2 2 5 0 0 7 0 43 10 5 42 0 0 1.793 59 0.30
42 42 A 0 0 0 0 19 0 7 0 0 0 0 0 0 45 0 0 19 0 10 0 42 0 0 1.403 46 0.33
43 43 A 7 19 10 2 0 0 0 7 40 0 7 7 0 0 0 0 0 0 0 0 42 0 0 1.749 58 0.30
44 44 A 7 45 0 0 38 0 2 0 0 0 0 0 0 0 0 5 0 0 2 0 42 0 0 1.238 41 0.63
45 45 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
46 46 A 12 2 43 17 19 0 0 0 0 0 0 5 0 0 0 0 0 2 0 0 42 0 0 1.554 51 0.51
47 47 A 2 29 0 2 10 0 2 17 5 0 29 2 0 0 0 0 0 0 2 0 42 0 0 1.828 61 0.17
48 48 A 0 2 0 0 0 0 0 0 0 0 0 0 0 0 5 81 7 5 0 0 42 0 0 0.739 24 0.73
49 49 A 0 0 0 0 0 0 0 0 12 0 0 2 0 0 12 67 5 0 2 0 42 0 0 1.100 36 0.57
50 50 A 7 10 17 0 0 0 7 2 29 0 19 5 0 0 0 0 0 0 5 0 42 0 0 1.952 65 0.20
51 51 A 0 0 0 0 0 0 0 86 0 0 2 0 0 0 0 0 0 12 0 0 42 0 0 0.474 15 0.83
52 52 A 12 17 7 2 60 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.227 40 0.69
53 53 A 10 2 36 17 0 0 0 0 10 0 0 2 0 0 0 0 24 0 0 0 42 1 0 1.634 54 0.29
54 54 A 0 0 0 0 0 0 0 2 5 0 10 5 0 0 0 2 0 0 37 39 41 0 0 1.438 48 0.49
55 55 A 2 0 0 0 0 0 0 0 14 5 7 2 0 0 0 0 2 52 0 14 42 0 0 1.495 49 0.48
56 56 A 0 0 0 0 0 0 0 0 36 0 29 2 0 0 0 0 2 10 10 12 42 0 0 1.605 53 0.38
57 57 A 0 0 0 0 0 0 0 98 0 0 2 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.97
58 58 A 0 5 0 0 0 0 0 0 0 0 0 2 0 2 0 12 7 43 7 21 42 0 0 1.647 54 0.46
59 59 A 10 10 43 2 26 0 0 0 0 0 0 5 0 5 0 0 0 0 0 0 42 0 0 1.541 51 0.52
60 60 A 2 17 2 2 2 0 0 0 0 0 7 0 2 0 2 2 40 5 10 5 42 0 0 1.990 66 0.20
61 61 A 14 10 7 5 0 0 2 0 12 7 7 2 0 2 5 17 0 7 2 0 42 0 0 2.454 81 0.11
62 62 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 29 7 62 42 0 0 0.932 31 0.77
63 63 A 38 2 0 2 0 0 0 0 2 0 0 10 0 12 0 19 7 0 7 0 42 0 0 1.805 60 0.19
64 64 A 17 29 40 2 7 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 42 0 0 1.445 48 0.63
65 65 A 2 2 0 2 0 0 0 0 0 0 0 0 0 0 17 57 7 12 0 0 42 0 0 1.327 44 0.49
66 66 A 0 2 10 0 0 0 0 0 12 0 2 26 0 0 2 14 12 19 0 0 42 0 0 1.942 64 0.21
67 67 A 2 0 0 0 0 0 0 0 2 0 2 2 0 0 7 83 0 0 0 0 42 0 0 0.696 23 0.75
68 68 A 0 76 7 0 14 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 42 1 0 0.763 25 0.82
69 69 A 2 2 0 2 0 0 0 15 0 2 2 12 0 0 7 46 0 5 2 0 41 0 0 1.776 59 0.29
70 70 A 0 7 0 0 0 0 0 5 2 10 7 0 0 7 14 14 2 26 2 2 42 0 0 2.197 73 0.19
71 71 A 33 7 5 0 0 0 0 2 14 5 0 5 0 0 0 2 5 5 12 5 42 0 0 2.134 71 0.21
72 72 A 5 14 19 0 5 2 2 0 14 0 26 5 0 0 5 2 0 0 0 0 42 1 0 2.070 69 0.16
73 73 A 5 2 0 0 2 0 2 24 5 2 10 0 0 0 0 7 0 22 10 7 41 0 0 2.171 72 0.24
74 74 A 2 0 0 0 0 0 0 10 0 0 5 2 0 19 0 5 0 0 12 45 42 5 2 1.620 54 0.41
75 75 A 0 5 0 0 0 0 0 0 5 24 0 0 0 0 0 5 0 19 11 30 37 0 0 1.733 57 0.31
76 76 A 0 0 0 0 0 0 0 7 14 0 0 0 0 0 0 7 0 50 0 21 42 0 0 1.332 44 0.55
77 77 A 5 10 2 0 0 0 0 0 10 0 0 10 0 0 0 31 0 33 0 0 42 0 0 1.635 54 0.24
78 78 A 45 2 10 2 0 0 0 2 26 0 5 5 0 0 0 0 0 0 2 0 42 0 0 1.580 52 0.39
79 79 A 0 2 0 0 0 0 0 0 5 0 0 2 0 0 0 12 2 14 24 38 42 0 0 1.653 55 0.45
80 80 A 0 0 2 0 0 0 0 0 17 0 2 0 0 0 12 50 2 7 0 7 42 0 0 1.543 51 0.39
81 81 A 12 48 36 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.119 37 0.65
82 82 A 55 7 21 2 0 0 2 0 10 0 0 0 0 0 0 0 2 0 0 0 42 0 0 1.339 44 0.59
83 83 A 0 0 0 0 0 0 0 2 21 0 2 5 0 0 0 10 10 24 17 10 42 0 0 1.965 65 0.35
84 84 A 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 76 5 10 0 5 42 0 0 0.899 30 0.66
85 85 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
86 86 A 24 10 2 0 5 0 0 2 40 0 0 12 0 0 0 0 0 0 2 2 42 0 0 1.686 56 0.30
87 87 A 74 2 5 5 0 0 0 0 0 0 2 0 0 2 5 0 0 2 0 2 42 0 0 1.104 36 0.59
88 88 A 0 2 0 0 0 0 0 0 2 2 7 7 0 0 2 57 5 14 0 0 42 0 0 1.476 49 0.42
89 89 A 0 0 0 0 0 0 0 2 2 0 0 0 0 0 2 83 0 5 5 0 42 0 0 0.709 23 0.74
90 90 A 0 0 0 0 0 0 0 14 12 7 10 0 0 0 0 5 2 5 2 43 42 0 1 1.775 59 0.43
91 91 A 0 0 0 0 0 0 0 0 2 0 14 71 0 0 0 0 0 0 0 12 42 0 0 0.861 28 0.60
92 92 A 0 2 0 0 0 0 0 10 2 81 2 0 0 0 0 2 0 0 0 0 42 0 0 0.751 25 0.70
93 93 A 0 2 0 0 0 0 0 0 0 0 2 0 5 0 0 5 43 43 0 0 42 0 0 1.194 39 0.49
94 94 A 0 10 0 0 0 0 0 0 2 0 0 0 0 10 0 2 2 55 2 17 42 0 0 1.432 47 0.49
95 95 A 0 2 0 0 0 0 0 0 0 0 14 79 0 0 0 0 5 0 0 0 42 0 0 0.701 23 0.66
96 96 A 2 0 0 0 0 0 0 0 74 0 19 2 2 0 0 0 0 0 0 0 42 0 0 0.807 26 0.67
97 97 A 2 2 10 0 48 0 14 0 7 0 2 0 0 10 0 2 0 0 0 2 42 0 0 1.713 57 0.38
98 98 A 0 2 0 0 0 0 0 0 5 0 0 0 0 5 0 0 19 48 10 12 42 0 0 1.525 50 0.53
99 99 A 7 12 7 5 24 0 0 0 10 0 12 24 0 0 0 0 0 0 0 0 42 0 0 1.936 64 0.21
100 100 A 7 17 7 2 45 0 5 2 5 0 0 5 0 5 0 0 0 0 0 0 42 0 0 1.792 59 0.43
101 101 A 5 5 0 2 2 2 0 0 0 0 0 2 2 0 7 67 2 0 0 2 42 0 0 1.372 45 0.46
102 102 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
103 103 A 20 32 8 3 5 0 17 0 5 0 0 5 5 0 0 0 0 0 0 0 40 0 0 1.878 62 0.36
104 104 A 3 5 3 3 5 0 28 0 0 3 3 3 0 22 20 0 3 0 0 3 40 0 0 2.050 68 0.14
105 105 A 3 0 0 0 0 0 0 0 8 0 3 5 0 0 5 22 13 28 0 15 40 0 0 1.913 63 0.34
106 106 A 3 0 0 0 0 0 0 0 0 0 3 0 0 3 0 15 10 10 49 8 39 0 0 1.585 52 0.46
107 107 A 0 0 0 0 0 0 0 0 3 0 9 22 0 0 22 41 0 0 3 0 32 0 0 1.469 49 0.36
108 108 A 0 0 0 0 0 0 0 4 7 54 32 0 0 0 0 0 0 0 4 0 28 0 0 1.126 37 0.50
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
10 28 45 1 rVv
16 28 48 1 kIr
17 75 95 1 gDa
24 75 95 1 gDn
26 28 43 1 qLr
27 28 45 1 qLr
31 24 47 1 kVn
34 19 33 2 pKSh
35 19 38 2 pATy
36 6 41 1 sKv
41 28 48 1 aLr
41 89 110 1 gAd
//