Complet list of 1bw6 hssp file
Complete list of 1bw6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BW6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-31
HEADER DNA BINDING PROTEIN 30-SEP-98 1BW6
COMPND MOL_ID: 1; MOLECULE: PROTEIN (CENTROMERE PROTEIN B); CHAIN: A; FRAGMEN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR J.IWAHARA,T.KIGAWA,K.KITAGAWA,H.MASUMOTO,T.OKAZAKI, S.YOKOYAMA,RIKEN S
DBREF 1BW6 A 1 56 UNP P07199 CENPB_HUMAN 1 56
SEQLENGTH 56
NCHAIN 1 chain(s) in 1BW6 data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CENPB_CRIGR 1.00 1.00 1 56 1 56 56 0 0 606 P48988 Major centromere autoantigen B OS=Cricetulus griseus GN=CENPB PE=3 SV=1
2 : CENPB_HUMAN 1UFI 1.00 1.00 1 56 1 56 56 0 0 599 P07199 Major centromere autoantigen B OS=Homo sapiens GN=CENPB PE=1 SV=2
3 : CENPB_MOUSE 1.00 1.00 1 56 1 56 56 0 0 599 P27790 Major centromere autoantigen B OS=Mus musculus GN=Cenpb PE=2 SV=2
4 : D4A5E3_RAT 1.00 1.00 3 56 2 55 54 0 0 626 D4A5E3 Protein Cenpb (Fragment) OS=Rattus norvegicus GN=Cenpb PE=4 SV=2
5 : G3MWI2_BOVIN 1.00 1.00 10 56 11 57 47 0 0 361 G3MWI2 Uncharacterized protein (Fragment) OS=Bos taurus GN=CENPB PE=4 SV=1
6 : H0XP85_OTOGA 1.00 1.00 3 56 1 54 54 0 0 603 H0XP85 Uncharacterized protein (Fragment) OS=Otolemur garnettii GN=CENPB PE=4 SV=1
7 : H2R5Y3_PANTR 1.00 1.00 1 56 1 56 56 0 0 425 H2R5Y3 Uncharacterized protein OS=Pan troglodytes GN=CENPB PE=4 SV=1
8 : I2CTV5_MACMU 1.00 1.00 1 56 1 56 56 0 0 603 I2CTV5 Major centromere autoantigen B OS=Macaca mulatta GN=CENPB PE=2 SV=1
9 : I3N785_SPETR 1.00 1.00 7 56 1 50 50 0 0 626 I3N785 Uncharacterized protein (Fragment) OS=Spermophilus tridecemlineatus GN=CENPB PE=4 SV=1
10 : L8YCZ0_TUPCH 1.00 1.00 1 56 1 56 56 0 0 606 L8YCZ0 Major centromere autoantigen B OS=Tupaia chinensis GN=TREES_T100018090 PE=4 SV=1
11 : Q71VN4_HUMAN 1.00 1.00 1 56 1 56 56 0 0 125 Q71VN4 Centromere protein B (Fragment) OS=Homo sapiens PE=2 SV=1
12 : Q923C5_MOUSE 1.00 1.00 1 56 1 56 56 0 0 622 Q923C5 Cenpb protein OS=Mus musculus GN=Cenpb PE=2 SV=1
13 : K9IYY6_DESRO 0.98 1.00 1 56 1 56 56 0 0 605 K9IYY6 Putative tigger transposase OS=Desmodus rotundus PE=2 SV=1
14 : F6WYF8_MONDO 0.96 0.98 1 56 1 56 56 0 0 586 F6WYF8 Uncharacterized protein OS=Monodelphis domestica GN=CENPB PE=4 SV=1
15 : F6WAY4_ORNAN 0.95 0.98 1 56 1 56 56 0 0 555 F6WAY4 Uncharacterized protein OS=Ornithorhynchus anatinus GN=CENPB PE=4 SV=1
16 : G1LW80_AILME 0.88 0.95 1 56 1 56 56 0 0 591 G1LW80 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=CENPB PE=4 SV=1
17 : J9LV68_ACYPI 0.57 0.68 1 53 3 54 53 1 1 146 J9LV68 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
18 : J9K6L9_ACYPI 0.50 0.80 4 53 6 53 50 1 2 412 J9K6L9 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
19 : J9KXM8_ACYPI 0.50 0.67 6 53 3 49 48 1 1 153 J9KXM8 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
20 : B4GGQ9_DROPE 0.46 0.67 5 52 10 56 48 1 1 228 B4GGQ9 GL17090 OS=Drosophila persimilis GN=Dper\GL17090 PE=4 SV=1
21 : J9L0E6_ACYPI 0.46 0.62 6 55 7 55 50 1 1 176 J9L0E6 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
22 : J9LQT1_ACYPI 0.46 0.62 6 55 7 55 50 1 1 179 J9LQT1 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
23 : Q28ZV1_DROPS 0.46 0.67 5 52 10 56 48 1 1 228 Q28ZV1 GA11571 OS=Drosophila pseudoobscura pseudoobscura GN=Dpse\GA11571 PE=4 SV=2
24 : J9JSJ8_ACYPI 0.45 0.72 3 55 4 55 53 1 1 504 J9JSJ8 Uncharacterized protein OS=Acyrthosiphon pisum GN=LOC100162120 PE=4 SV=1
25 : L7MAM5_9ACAR 0.44 0.67 4 55 1 51 52 1 1 495 L7MAM5 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
26 : L7MCT9_9ACAR 0.44 0.69 5 52 8 54 48 1 1 489 L7MCT9 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
27 : T1JMU9_STRMM 0.43 0.63 4 54 48 97 51 1 1 565 T1JMU9 Uncharacterized protein OS=Strigamia maritima PE=4 SV=1
28 : B8C3I4_THAPS 0.42 0.62 3 52 227 276 50 0 0 521 B8C3I4 Predicted protein OS=Thalassiosira pseudonana GN=THAPSDRAFT_5653 PE=4 SV=1
29 : I4Y570_WALSC 0.42 0.62 1 51 177 228 52 1 1 314 I4Y570 CenpB-DNA-bind-domain-containing protein (Fragment) OS=Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66) GN=WALSEDRAFT_34269 PE=4 SV=1
30 : J9LQJ5_ACYPI 0.42 0.69 2 53 54 103 52 1 2 169 J9LQJ5 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
31 : K5VKQ9_PHACS 0.42 0.65 4 55 33 83 52 1 1 240 K5VKQ9 Uncharacterized protein (Fragment) OS=Phanerochaete carnosa (strain HHB-10118-sp) GN=PHACADRAFT_262418 PE=4 SV=1
32 : L7MLS5_9ACAR 0.42 0.67 1 52 4 53 52 1 2 493 L7MLS5 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
33 : L7MM95_9ACAR 0.42 0.67 1 52 4 53 52 1 2 493 L7MM95 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
34 : L7MMF1_9ACAR 0.42 0.67 1 52 4 53 52 1 2 527 L7MMF1 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
35 : R9A9V4_WALI9 0.42 0.62 1 51 177 228 52 1 1 526 R9A9V4 Major centromere autoantigen B OS=Wallemia ichthyophaga (strain EXF-994 / CBS 113033) GN=J056_002841 PE=4 SV=1
36 : D2H8M5_AILME 0.41 0.73 4 52 8 54 49 1 2 524 D2H8M5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100472501 PE=4 SV=1
37 : D6X1M5_TRICA 0.41 0.76 8 53 10 53 46 1 2 486 D6X1M5 Putative uncharacterized protein OS=Tribolium castaneum GN=TcasGA2_TC001653 PE=4 SV=1
38 : F1P9F2_CANFA 0.41 0.73 4 52 8 54 49 1 2 524 F1P9F2 Uncharacterized protein OS=Canis familiaris GN=TIGD6 PE=4 SV=2
39 : F6SYA9_MONDO 0.41 0.73 4 52 8 54 49 1 2 523 F6SYA9 Uncharacterized protein OS=Monodelphis domestica GN=TIGD6 PE=4 SV=1
40 : G3MP65_9ACAR 0.41 0.73 4 52 43 89 49 1 2 552 G3MP65 Putative uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1
41 : G3R0M8_GORGO 0.41 0.73 4 52 8 54 49 1 2 521 G3R0M8 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101152628 PE=4 SV=1
42 : G3WWJ9_SARHA 0.41 0.73 4 52 8 54 49 1 2 525 G3WWJ9 Uncharacterized protein OS=Sarcophilus harrisii GN=TIGD6 PE=4 SV=1
43 : G7MVL7_MACMU 0.41 0.73 4 52 8 54 49 1 2 521 G7MVL7 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_17017 PE=4 SV=1
44 : G7P8N9_MACFA 0.41 0.73 4 52 8 54 49 1 2 521 G7P8N9 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_15543 PE=4 SV=1
45 : G9KTC6_MUSPF 0.41 0.73 4 52 8 54 49 1 2 328 G9KTC6 Tigger transposable element derived 6 (Fragment) OS=Mustela putorius furo PE=2 SV=1
46 : H2QRS5_PANTR 0.41 0.73 4 52 8 54 49 1 2 521 H2QRS5 Tigger transposable element derived 6 OS=Pan troglodytes GN=TIGD6 PE=2 SV=1
47 : I3MC73_SPETR 0.41 0.73 4 52 8 54 49 1 2 525 I3MC73 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=TIGD6 PE=4 SV=1
48 : J9L9B3_ACYPI 0.41 0.65 1 53 1 54 54 1 1 158 J9L9B3 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
49 : L7MKX2_9ACAR 0.41 0.69 2 50 3 49 49 1 2 475 L7MKX2 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
50 : M3WQ55_FELCA 0.41 0.73 4 52 8 54 49 1 2 524 M3WQ55 Uncharacterized protein OS=Felis catus GN=TIGD6 PE=4 SV=1
51 : M3Z6I0_MUSPF 0.41 0.73 4 52 8 54 49 1 2 454 M3Z6I0 Uncharacterized protein OS=Mustela putorius furo GN=TIGD6 PE=4 SV=1
52 : Q4W445_HORSE 0.41 0.73 4 52 8 54 49 1 2 524 Q4W445 Tigger transposable element derived 14 OS=Equus caballus GN=tigd14 PE=4 SV=1
53 : S9YJN5_9CETA 0.41 0.73 4 52 8 54 49 1 2 524 S9YJN5 Uncharacterized protein OS=Camelus ferus GN=CB1_000236002 PE=4 SV=1
54 : TIGD6_HUMAN 0.41 0.73 4 52 8 54 49 1 2 521 Q17RP2 Tigger transposable element-derived protein 6 OS=Homo sapiens GN=TIGD6 PE=2 SV=2
55 : U6CUM6_NEOVI 0.41 0.73 4 52 8 54 49 1 2 524 U6CUM6 Tigger transposable element-derived protein 6 OS=Neovison vison GN=TIGD6 PE=2 SV=1
56 : B4NSC8_DROSI 0.40 0.65 5 52 10 56 48 1 1 111 B4NSC8 GD15259 OS=Drosophila simulans GN=Dsim\GD15259 PE=4 SV=1
57 : C1C1N1_9MAXI 0.40 0.74 9 55 174 220 47 0 0 318 C1C1N1 Major centromere autoantigen B OS=Caligus clemensi GN=CENPB PE=2 SV=1
58 : J9LJT5_ACYPI 0.40 0.62 8 52 199 240 45 1 3 255 J9LJT5 Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1
59 : H3A4R8_LATCH 0.38 0.62 1 55 14 67 55 1 1 140 H3A4R8 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
60 : H3A8U3_LATCH 0.38 0.62 1 55 15 68 55 1 1 482 H3A8U3 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
61 : H9GVQ6_ANOCA 0.38 0.74 5 54 103 151 50 1 1 571 H9GVQ6 Uncharacterized protein OS=Anolis carolinensis GN=TIGD3 PE=4 SV=2
62 : L7MMJ0_9ACAR 0.38 0.66 3 52 8 55 50 1 2 568 L7MMJ0 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
63 : M1VWD3_CLAP2 0.38 0.67 5 56 151 202 52 0 0 557 M1VWD3 Uncharacterized protein OS=Claviceps purpurea (strain 20.1) GN=CPUR_04923 PE=4 SV=1
64 : T1JIF1_STRMM 0.38 0.60 2 54 14 65 53 1 1 563 T1JIF1 Uncharacterized protein OS=Strigamia maritima PE=4 SV=1
65 : E9EFK3_METAQ 0.37 0.63 5 56 132 183 52 0 0 563 E9EFK3 Putative uncharacterized protein OS=Metarhizium acridum (strain CQMa 102) GN=MAC_08651 PE=4 SV=1
66 : H2ZVU2_LATCH 0.37 0.65 4 55 16 65 52 1 2 431 H2ZVU2 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
67 : I2B2N4_BEABA 0.37 0.63 5 56 132 183 52 0 0 506 I2B2N4 Homeodomain-like protein OS=Beauveria bassiana GN=HDLP PE=4 SV=1
68 : K5WVA2_AGABU 0.37 0.65 3 56 86 139 54 0 0 348 K5WVA2 Uncharacterized protein OS=Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) GN=AGABI1DRAFT_85261 PE=4 SV=1
69 : K9I1A9_AGABB 0.37 0.65 3 56 86 139 54 0 0 348 K9I1A9 Uncharacterized protein OS=Agaricus bisporus var. bisporus (strain H97 / ATCC MYA-4626 / FGSC 10389) GN=AGABI2DRAFT_137362 PE=4 SV=1
70 : L7MDS5_9ACAR 0.37 0.69 2 52 7 57 51 0 0 488 L7MDS5 Putative tick transposon (Fragment) OS=Rhipicephalus pulchellus PE=2 SV=1
71 : G3MRX6_9ACAR 0.36 0.78 1 55 1 55 55 0 0 492 G3MRX6 Putative uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 210 23 33 MMM MM MMMMMMIL I VVVI M MM
2 2 A G + 0 0 65 27 54 GGG GG GGGGGGAK GS PPPG GG AA P S
3 3 A P + 0 0 23 34 64 PPPP PPP PPPPPPAR R QPQ RRRP KR SS R N PPR
4 4 A K S S+ 0 0 124 56 19 KKKK KKK KKKKKKHKK KR RTRHKKKKRK KKKKKKKKKKKKKKKKKK KK K R K KKK
5 5 A R S S- 0 0 213 64 19 RRRR RRR RRRRRRRLR R RLRHRRRRRRRRRR RRRRRRRRRRRRRRRRRRR CRRRRRRKRKKR
6 6 A R S S- 0 0 154 67 44 RRRR RRR RRRRRRAVKKRKKRKKQRRKDRKKKKR RRKRRRRRRRKKRRRRRRT KKKKKKKKKAAK
7 7 A Q - 0 0 95 67 77 QQQQ QQQQQQQQQQXTQTLSSLITAARTQLVVVTQ QQTQQQQQQQSQQQQQQQS AAETTATSTKKS
8 8 A L - 0 0 27 70 31 LLLL LLLLLLLLLLVLFLLLLLLLLLLKPYLLLKFLFFLFFFFFFFNIFFFFFFL LIILFLLLLLLLL
9 9 A T > - 0 0 81 71 52 TTTT TTTTTTTTTTTTSTSTTSTSSSTLATSSSLSTSSSSSSSSSSISSSSSSSTTSTTSTSSTSTTTS
10 10 A F H > S+ 0 0 103 72 43 FFFFFFFFFFFFFFFFILYLVVLIFLLMIEVFFFILILLLLLLLLLLLLLLLLLLLYILLLITLTIFNNL
11 11 A R H >> S+ 0 0 215 72 67 RRRRRRRRRRRRRRWRAEENGGNAEEEKNSDEEENEDEEEEEEEEEESSEEEEEEEQAEEQEEEEEEAAQ
12 12 A E H 3> S+ 0 0 59 72 36 EEEEEEEEEEEEEEEEEEEEDDEEEKTEEEREEEEEDEEQEEEEEEEIEEEEEEEEEDTTEQQTQEQLLE
13 13 A K H 3X S+ 0 0 41 72 15 KKKKKKKKKKKKKKKKKKKKKKKKKKKQTKRKKKTKKKKKKKKKKKKSKKKKKKKKKKKKKKKKKKKRRK
14 14 A S H - 0 0 170 72 51 RRRRRRRRRRRRRRRRQKTSCRSKKSQGRKRKKKRRRRRKRRRRRRRKKRRRRRRSKEYSSKRQRKRKKK
28 28 A K H > S+ 0 0 77 72 38 KKKKKKKKKKKKKKKKKKKVKKVNKKKHQKQKKKQKKKKKKKKKKKKKQKKKKKKVKKKKQKQRQKQQQK
29 29 A G H > S+ 0 0 17 72 73 GGGGGGGGGGGGGGGGNGSRKKRYKTNKEGEKKKEGKGGAGGGGGGGCAGGGGGGRIKKKSKANAAAEEV
30 30 A E H > S+ 0 0 92 72 35 EEEEEEEEEEEEEEEEEELDDDDEEEEEDEDDDDDDDDDADDDDDDDEDDDDDDDDEDQQEKDKDEDEEC
31 31 A I H X S+ 0 0 4 72 21 IIIIIIIIIIIIIIIIIVILIILVVVIVIVIVVVIVVVVIVVVVVVVIIVVVVVVLLVIILVIIIIVIII
32 32 A A H >X S+ 0 0 0 72 7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAAA
33 33 A R H 3< S+ 0 0 163 72 65 RRRRRRRRRRRRRRRRKKKRSSRNAKKSSKQAAASKAKKEKKKKKKKKRKKKKKKKRLDDKERKLAHQQK
34 34 A R H 3< S- 0 0 185 72 65 RRRRRRRRRRRRRRRRQKEREERARKEERKHRRRREKEEDEEEEEEEEREEEEEERMREERDEEREVRRE
35 35 A F H << S+ 0 0 76 72 5 FFFFFFFFFFFFFFFFFYFFFFFFFFYYYYFFFFYFFFFFFFFFFFFFMFFFFFFFFFFFFFFYFYFFFL
36 36 A N S < S- 0 0 12 72 45 NNNNNNNNNNNNNNNNNGGNGGNGGNGGQVNNNNQGNGGGGGGGGGGNGGGGGGGNGGGGGGGGGGNGGG
37 37 A I - 0 0 2 72 10 IIIIIIIIIIIIIIIIIIIIIIIIVIIIIIVIIIIIIIIIIIIIIIIILIIIIIIILIIIVIVIVIVVVL
38 38 A P >> - 0 0 47 72 67 PPPPPPPPPPPPPPPPPSPGPPGPRPSAESEPPPETPTTPTTTTTTTPSTTTTTTGPPSSSAESEKEEET
39 39 A P T 34 S+ 0 0 67 72 60 PPPPPPPPPPPPPPPPPPPKAAKSPKQRRPRAAARPAPPAPPPPPPPPKPPPPPPKRAPPQLRHRKRRRP
40 40 A S T 3> S+ 0 0 76 72 26 SSSSSSSSSSSSSSSSSSNTSSTSSSSTSSSSSSSSSSSSSSSSSSSNQSSSSSSTGSSSPSSSSNSSSS
41 41 A T H <> S+ 0 0 29 72 24 TTTTTTTTTTTTTTTTTTTQTTQTTTTTTTTSSSTTTTTSTTTTTTTTTTTTTTTQTTTTQTTTTSTTTT
42 42 A L H X S+ 0 0 0 72 29 LLLLLLLLLLLLLLLLLLLALLALLLLVVFVLLLVLVLLLLLLLLLLLVLLLLLLALLLPILVLVLVVVL
43 43 A S H > S+ 0 0 32 72 19 SSSSSSSSSSSSSSSSSSSASSASSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSASSNSCSSSSSSSSN
44 44 A T H >X S+ 0 0 95 72 42 TTTTTTTTTTTTTTTTTTTGTTGTTRTTKTKTTTKTTTTTTTTTTTTPTTTTTTTDETTTRTKTKSKKKS
45 45 A I H 3< S+ 0 0 5 72 27 IIIIIIIIIIIIIIIIIIYIIIIIIIILIIIIIIIFIFFIFFFFFFFIIFFFFFFIIIIIIIVIVIVIII
46 46 A L H 3< S+ 0 0 32 72 11 LLLLLLLLLLLLLLLLLLLLLLLLLLYLLLLLLLLLLLLLLLLLLLLILLLLLLLLLLLLILLYLMLLLV
47 47 A K H << S+ 0 0 173 72 24 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSSSKKKKKGKKKKKKKKKKKKKKKKKKKKKLRKRKRKKA
48 48 A N S >X S+ 0 0 65 72 54 NNNNNNNNNNNNNNNNNDNNDDNNHNNRQDEAAAQDKDDNDDDDDDDQNDDDDDDHSKSSNNNNHNNEEK
49 49 A K H 3> S+ 0 0 56 72 22 KKKKKKKKKKKKKKKKKRKKKKKKKKKKKRKKKKKRKRRKRRRRRRRKKRRRRRRKRKKKKKKKKKKKKR
50 50 A R H 34 S+ 0 0 200 72 79 RRRRRRRRRRRRRRRRDEEGDNGTDEDEDEVDDDDAAAADTATTTTAEDATVATTQHDDDEEDDDKEKKI
51 51 A A H X4 S+ 0 0 68 71 78 AAAAAAAAAAAAAAAADSTQKKQKRTKLKSRSSSKKEKKSKKKKKKKK KKKRKKSMHKKRAERQKMTTE
52 52 A I H 3< S+ 0 0 37 69 38 IIIIIIIIIIIIIIIIIIIIIIIIIIII IWIII FIFFVFFFFFFFI FFFFFFIILIIIVYIYIYWWI
53 53 A L T 3< S+ 0 0 44 41 17 LLLLLLLLLLLLLLLLLLL LL LF M LL I M I LFL LLLLLLL
54 54 A A S < S+ 0 0 73 35 73 AAAAAAAAAAAAAAAA KK TT N S D EEA GERDKNN
55 55 A S 0 0 112 32 76 SSSSSSSSSSSSSSSS AA NA T T AA R RAGII
56 56 A E 0 0 212 22 6 EEEEEEEEEEEEEEEE E D EEE
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A M 0 0 210 23 33 M
2 2 A G + 0 0 65 27 54 S
3 3 A P + 0 0 23 34 64 R
4 4 A K S S+ 0 0 124 56 19 K
5 5 A R S S- 0 0 213 64 19 R
6 6 A R S S- 0 0 154 67 44 H
7 7 A Q - 0 0 95 67 77 S
8 8 A L - 0 0 27 70 31 F
9 9 A T > - 0 0 81 71 52 T
10 10 A F H > S+ 0 0 103 72 43 L
11 11 A R H >> S+ 0 0 215 72 67 D
12 12 A E H 3> S+ 0 0 59 72 36 E
13 13 A K H 3X S+ 0 0 41 72 15 K
14 14 A S H - 0 0 170 72 51 K
28 28 A K H > S+ 0 0 77 72 38 R
29 29 A G H > S+ 0 0 17 72 73 V
30 30 A E H > S+ 0 0 92 72 35 T
31 31 A I H X S+ 0 0 4 72 21 L
32 32 A A H >X S+ 0 0 0 72 7 A
33 33 A R H 3< S+ 0 0 163 72 65 K
34 34 A R H 3< S- 0 0 185 72 65 Q
35 35 A F H << S+ 0 0 76 72 5 L
36 36 A N S < S- 0 0 12 72 45 D
37 37 A I - 0 0 2 72 10 I
38 38 A P >> - 0 0 47 72 67 P
39 39 A P T 34 S+ 0 0 67 72 60 V
40 40 A S T 3> S+ 0 0 76 72 26 T
41 41 A T H <> S+ 0 0 29 72 24 T
42 42 A L H X S+ 0 0 0 72 29 L
43 43 A S H > S+ 0 0 32 72 19 Q
44 44 A T H >X S+ 0 0 95 72 42 T
45 45 A I H 3< S+ 0 0 5 72 27 F
46 46 A L H 3< S+ 0 0 32 72 11 I
47 47 A K H << S+ 0 0 173 72 24 T
48 48 A N S >X S+ 0 0 65 72 54 K
49 49 A K H 3> S+ 0 0 56 72 22 R
50 50 A R H 34 S+ 0 0 200 72 79 Q
51 51 A A H X4 S+ 0 0 68 71 78 S
52 52 A I H 3< S+ 0 0 37 69 38 I
53 53 A L T 3< S+ 0 0 44 41 17 E
54 54 A A S < S+ 0 0 73 35 73 A
55 55 A S 0 0 112 32 76 S
56 56 A E 0 0 212 22 6
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 13 4 13 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0.920 30 0.66
2 2 A 0 0 0 0 0 0 0 59 11 15 11 0 0 0 0 4 0 0 0 0 27 0 0 1.203 40 0.45
3 3 A 0 0 0 0 0 0 0 0 3 53 6 0 0 0 26 3 6 0 3 0 34 0 0 1.333 44 0.35
4 4 A 0 0 0 0 0 0 0 0 0 0 0 2 0 4 9 86 0 0 0 0 56 0 0 0.539 17 0.81
5 5 A 0 3 0 0 0 0 0 0 0 0 0 0 2 2 89 5 0 0 0 0 64 0 0 0.485 16 0.81
6 6 A 1 0 0 0 0 0 0 0 4 0 0 1 0 1 52 36 1 0 0 1 67 0 0 1.160 38 0.55
7 7 A 4 4 1 0 0 0 0 0 7 0 10 15 0 0 1 3 51 1 0 0 67 0 0 1.629 54 0.22
8 8 A 1 60 4 0 27 0 1 0 0 1 0 0 0 0 0 3 0 0 1 0 70 0 0 1.140 38 0.69
9 9 A 0 3 1 0 0 0 0 0 1 0 46 48 0 0 0 0 0 0 0 0 71 0 0 0.929 31 0.47
10 10 A 4 43 11 1 31 0 3 0 0 0 0 3 0 0 0 0 0 1 3 0 72 0 0 1.519 50 0.57
11 11 A 0 0 0 0 0 1 0 3 7 0 4 0 0 0 22 1 4 47 6 4 72 0 0 1.650 55 0.32
12 12 A 0 3 1 0 0 0 0 0 0 0 0 6 0 0 1 1 7 75 0 6 72 0 0 1.000 33 0.63
13 13 A 0 0 0 0 0 0 0 0 0 0 1 3 0 0 4 90 1 0 0 0 72 0 0 0.443 14 0.85
14 14 A 7 6 4 24 4 0 6 0 4 0 29 0 1 0 7 7 0 0 0 1 72 0 0 2.093 69 0.08
15 15 A 0 0 1 0 0 0 0 0 10 0 0 0 0 1 29 31 4 10 7 7 72 0 0 1.797 59 0.30
16 16 A 33 3 53 6 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 72 0 0 1.182 39 0.68
17 17 A 32 8 51 0 0 0 0 0 0 0 0 0 7 0 1 0 0 0 0 0 72 41 3 1.158 38 0.64
18 18 A 6 10 3 0 0 0 0 0 0 0 3 0 0 0 6 3 68 0 0 0 31 0 0 1.176 39 0.30
19 19 A 2 0 0 2 9 0 11 0 0 0 2 4 0 0 7 4 7 47 4 0 45 1 0 1.845 61 0.06
20 20 A 31 1 0 3 1 0 1 4 10 0 4 0 0 4 0 3 3 26 6 1 70 0 0 2.059 68 0.12
21 21 A 14 3 0 0 0 0 0 0 31 0 1 1 0 0 0 3 8 35 0 4 72 0 0 1.661 55 0.26
22 22 A 35 1 0 0 0 0 0 0 4 0 0 1 0 3 0 8 0 42 0 6 72 0 0 1.450 48 0.24
23 23 A 1 0 0 0 0 0 0 1 3 0 8 0 0 6 1 7 3 6 38 26 72 0 0 1.810 60 0.38
24 24 A 0 0 0 0 0 0 0 8 4 42 29 1 0 0 3 3 0 4 6 0 72 0 0 1.615 53 0.36
25 25 A 4 0 0 0 1 0 0 40 1 0 3 3 0 4 0 15 0 1 3 24 72 1 0 1.736 57 0.30
26 26 A 3 35 0 4 0 0 0 3 3 0 0 4 0 0 8 28 6 4 0 1 71 0 0 1.858 62 0.13
27 27 A 0 0 0 0 0 0 1 1 0 0 8 1 1 0 57 24 4 1 0 0 72 0 0 1.298 43 0.49
28 28 A 4 0 0 0 0 0 0 0 0 0 0 0 0 1 3 76 14 0 1 0 72 0 0 0.831 27 0.62
29 29 A 3 0 1 0 0 0 1 49 8 0 3 1 1 0 4 17 0 7 4 0 72 0 0 1.743 58 0.27
30 30 A 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 3 3 43 0 46 72 0 0 1.157 38 0.64
31 31 A 40 8 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.915 30 0.79
32 32 A 0 0 0 0 0 0 0 4 94 1 0 0 0 0 0 0 0 0 0 0 72 0 0 0.246 8 0.93
33 33 A 0 3 0 0 0 0 0 0 8 0 7 0 0 1 31 39 4 3 1 3 72 0 0 1.672 55 0.34
34 34 A 1 0 0 1 0 0 0 0 1 0 0 0 0 1 44 6 3 39 0 3 72 0 0 1.325 44 0.35
35 35 A 0 3 0 1 85 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.544 18 0.95
36 36 A 1 0 0 0 0 0 0 54 0 0 0 0 0 0 0 0 3 0 40 1 72 0 0 0.917 30 0.54
37 37 A 11 4 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.517 17 0.89
38 38 A 0 0 0 0 0 0 0 4 3 44 11 24 0 0 1 1 0 11 0 0 72 0 0 1.540 51 0.33
39 39 A 1 1 0 0 0 0 0 0 11 58 1 0 0 1 14 8 3 0 0 0 72 0 0 1.377 45 0.40
40 40 A 0 0 0 0 0 0 0 1 0 1 85 7 0 0 0 0 1 0 4 0 72 0 0 0.636 21 0.74
41 41 A 0 0 0 0 0 0 0 0 0 0 7 88 0 0 0 0 6 0 0 0 72 0 0 0.463 15 0.76
42 42 A 15 76 1 0 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 72 0 0 0.803 26 0.71
43 43 A 0 0 0 0 0 0 0 0 4 0 89 0 1 0 0 0 1 0 4 0 72 0 0 0.488 16 0.81
44 44 A 0 0 0 0 0 0 0 3 0 1 3 76 0 0 3 11 0 1 0 1 72 0 0 0.927 30 0.58
45 45 A 4 1 69 0 24 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.845 28 0.73
46 46 A 1 90 4 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.443 14 0.89
47 47 A 0 1 0 0 0 0 0 1 1 0 4 1 0 0 4 86 0 0 0 0 72 0 0 0.631 21 0.76
48 48 A 0 0 0 0 0 0 0 0 4 0 4 0 0 4 1 6 4 4 44 28 72 0 0 1.598 53 0.45
49 49 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 71 0 0 0 0 72 0 0 0.604 20 0.78
50 50 A 3 0 1 0 0 0 0 3 11 0 0 13 0 1 24 4 3 13 1 24 72 0 0 2.055 68 0.20
51 51 A 0 1 0 3 0 0 0 0 25 0 11 6 0 1 7 35 4 4 0 1 71 0 0 1.858 62 0.22
52 52 A 3 1 64 0 23 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 69 0 0 1.062 35 0.61
53 53 A 0 83 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 41 0 0 0.688 22 0.83
54 54 A 0 0 0 0 0 0 0 3 54 0 3 6 0 0 3 9 0 9 9 6 35 0 0 1.595 53 0.26
55 55 A 0 0 6 0 0 0 0 3 19 0 56 6 0 0 6 0 0 0 3 0 32 0 0 1.374 45 0.24
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 5 22 0 0 0.185 6 0.93
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
29 18 194 1 iCv
35 18 194 1 iCv
48 18 18 1 rLi
//