Complet list of 1bm4 hssp file
Complete list of 1bm4.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BM4
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-28
HEADER VIRAL PROTEIN 28-JUL-98 1BM4
COMPND MOL_ID: 1; MOLECULE: PROTEIN (MOLONEY MURINE LEUKEMIA VIRUS CAPSID); C
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY S
AUTHOR C.B.CLISH,D.H.PEYTON,E.BARKLIS
DBREF 1BM4 A 1 32 UNP Q9WJP4 Q9WJP4_MLVMO 352 383
SEQLENGTH 32
NCHAIN 1 chain(s) in 1BM4 data set
NALIGN 286
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A7LM24_9GAMR 1.00 1.00 2 32 351 381 31 0 0 1618 A7LM24 Putative gag-pro-pol polyprotein (Fragment) OS=Xenotropic murine leukemia virus PE=4 SV=1
2 : A7UJ19_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1736 A7UJ19 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
3 : A7UJ20_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1736 A7UJ20 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
4 : A7UJ21_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1736 A7UJ21 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
5 : D0UFA3_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 D0UFA3 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
6 : D0UFA4_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 D0UFA4 Gag protein OS=XMRV GN=gag PE=4 SV=1
7 : D0UFA6_9GAMR3P1G 1.00 1.00 2 32 350 380 31 0 0 1733 D0UFA6 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
8 : D5H3E2_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 D5H3E2 Gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus 22Rv1/CWR-R1 GN=gag-pro-pol PE=4 SV=1
9 : E7DW15_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW15 Gag protein OS=XMRV PE=4 SV=1
10 : E7DW17_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW17 Gag protein OS=XMRV PE=4 SV=1
11 : E7DW18_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW18 Gag protein OS=XMRV PE=4 SV=1
12 : E7DW21_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW21 Gag protein OS=XMRV PE=4 SV=1
13 : E7DW23_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW23 Gag protein OS=XMRV PE=4 SV=1
14 : E7DW25_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E7DW25 Gag protein OS=XMRV PE=4 SV=1
15 : E9LY60_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 E9LY60 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
16 : E9LY61_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E9LY61 Putative gag protein OS=XMRV PE=4 SV=1
17 : E9LY63_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 E9LY63 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
18 : E9LY64_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 E9LY64 Putative gag protein OS=XMRV PE=4 SV=1
19 : F2QL73_9GAMR 1.00 1.00 2 32 341 371 31 0 0 1724 F2QL73 Gag-pro-pol polyprotein (Fragment) OS=XMRV GN=gag-pro-pol PE=4 SV=1
20 : F2QL74_9GAMR 1.00 1.00 2 32 341 371 31 0 0 527 F2QL74 Gag polyprotein (Fragment) OS=XMRV GN=gag PE=4 SV=1
21 : F6IZV5_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1737 F6IZV5 Putative gag-pro-pol polyprotein OS=PreXMRV-2 GN=gag-pro-pol PE=4 SV=1
22 : F6IZV6_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 F6IZV6 Putative gag polyprotein OS=PreXMRV-2 GN=gag PE=4 SV=1
23 : F8LFQ8_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 F8LFQ8 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
24 : F8LFQ9_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 F8LFQ9 Putative gag polyprotein OS=XMRV GN=gag PE=4 SV=1
25 : F8TLS7_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 F8TLS7 Putative gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag-pro-pol PE=4 SV=1
26 : F8TLS8_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 F8TLS8 Putative gag polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag PE=4 SV=1
27 : F8UU41_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1733 F8UU41 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
28 : F8UU42_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 F8UU42 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
29 : G4V4Z1_MOUSE 1.00 1.00 2 32 350 380 31 0 0 1737 G4V4Z1 Gag-pro-pol polyprotein OS=Mus musculus GN=gag-pro-pol PE=4 SV=1
30 : G4V4Z2_MOUSE 1.00 1.00 2 32 350 380 31 0 0 536 G4V4Z2 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
31 : GAG80_MLVMN 1.00 1.00 2 32 440 470 31 0 0 626 Q8UN02 Glycosylated Gag polyprotein OS=Moloney murine leukemia virus (strain neuropathogenic variant ts1-92b) GN=gag PE=3 SV=1
32 : GAG_MLVAV 2Y4Z 1.00 1.00 2 32 351 381 31 0 0 537 P03336 Gag polyprotein OS=AKV murine leukemia virus GN=gag PE=1 SV=3
33 : GAG_MLVBM 1.00 1.00 2 32 351 381 31 0 0 537 P29167 Gag polyprotein OS=Murine leukemia virus (strain BM5 eco) GN=gag PE=3 SV=3
34 : GAG_MLVCB 1.00 1.00 2 32 350 380 31 0 0 536 P27460 Gag polyprotein OS=Cas-Br-E murine leukemia virus GN=gag PE=3 SV=3
35 : GAG_MLVF5 1.00 1.00 2 32 353 383 31 0 0 539 P26807 Gag polyprotein OS=Friend murine leukemia virus (isolate 57) GN=gag PE=3 SV=3
36 : GAG_MLVFF 1.00 1.00 2 32 352 382 31 0 0 538 P26806 Gag polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=gag PE=1 SV=3
37 : GAG_MLVFP 1.00 1.00 2 32 352 382 31 0 0 538 P26805 Gag polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=gag PE=3 SV=3
38 : GAG_MLVHO 1.00 1.00 2 32 354 384 31 0 0 540 P21435 Gag polyprotein OS=Hortulanus murine leukemia virus GN=gag PE=3 SV=3
39 : GAG_MLVMS 1WWD 1.00 1.00 2 32 352 382 31 0 0 538 P03332 Gag polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag PE=1 SV=4
40 : GAG_MLVRD 1.00 1.00 2 32 351 381 31 0 0 537 P11269 Gag polyprotein OS=Radiation murine leukemia virus GN=gag PE=1 SV=3
41 : GAG_MSVMO 1.00 1.00 2 32 352 382 31 0 0 538 P03334 Gag polyprotein OS=Moloney murine sarcoma virus GN=gag PE=1 SV=3
42 : GAG_MSVMT 1.00 1.00 2 32 352 382 31 0 0 468 P32594 Gag polyprotein OS=Moloney murine sarcoma virus (strain ts110) GN=gag PE=3 SV=3
43 : GAG_XMRV3 1.00 1.00 2 32 350 380 31 0 0 536 Q2F7J2 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag PE=3 SV=1
44 : GAG_XMRV4 1.00 1.00 2 32 350 380 31 0 0 536 Q2F7I9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag PE=3 SV=1
45 : GAG_XMRV6 1.00 1.00 2 32 350 380 31 0 0 536 Q27ID9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag PE=3 SV=1
46 : O12373_9GAMR 1.00 1.00 2 32 352 382 31 0 0 538 O12373 Polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
47 : O39735_MLVFR 1.00 1.00 2 32 352 382 31 0 0 1738 O39735 Gag-pol polyprotein (Precursor protein) (Precursor) OS=Friend murine leukemia virus PE=4 SV=1
48 : O39736_MLVFR 1.00 1.00 2 32 352 382 31 0 0 538 O39736 Gag polyprotein (Precursor) OS=Friend murine leukemia virus GN=gag PE=4 SV=2
49 : O41249_MLVRA 1.00 1.00 2 32 352 382 31 0 0 538 O41249 Gag polyprotein OS=Rauscher murine leukemia virus PE=4 SV=1
50 : O56222_MSVMO 1.00 1.00 2 32 352 382 31 0 0 538 O56222 Pr65 OS=Moloney murine sarcoma virus GN=gag PE=4 SV=2
51 : P70355_MOUSE 1.00 1.00 2 32 351 381 31 0 0 1734 P70355 Gag-Pol polyprotein OS=Mus musculus GN=Mela PE=2 SV=1
52 : POL_MLVMS 1ZTT 1.00 1.00 2 32 352 382 31 0 0 1738 P03355 Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4
53 : POL_XMRV3 3V1O 1.00 1.00 2 32 350 380 31 0 0 1733 Q2F7J3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1
54 : POL_XMRV4 1.00 1.00 2 32 350 380 31 0 0 1733 Q2F7J0 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1
55 : POL_XMRV6 3P1G 1.00 1.00 2 32 350 380 31 0 0 1733 A1Z651 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1
56 : Q1KYL5_9GAMR 1.00 1.00 2 32 351 381 31 0 0 537 Q1KYL5 Gag polyprotein pr65 OS=Murine leukemia virus PE=4 SV=1
57 : Q1KYL6_9GAMR 1.00 1.00 2 32 351 381 31 0 0 1734 Q1KYL6 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
58 : Q1KYL8_MOUSE 1.00 1.00 2 32 351 381 31 0 0 537 Q1KYL8 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
59 : Q1KYL9_MOUSE 1.00 1.00 2 32 351 381 31 0 0 1734 Q1KYL9 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
60 : Q60FS7_9GAMR 1.00 1.00 2 32 348 378 31 0 0 534 Q60FS7 GAG polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
61 : Q67457_MLVFR 1.00 1.00 2 32 352 382 31 0 0 538 Q67457 Pr65 OS=Friend murine leukemia virus GN=gag PE=4 SV=2
62 : Q6YIY0_MOUSE 1.00 1.00 2 32 350 380 31 0 0 536 Q6YIY0 Gag protein OS=Mus musculus PE=2 SV=1
63 : Q7SVK7_9GAMR 1.00 1.00 2 32 351 381 31 0 0 1734 Q7SVK7 Gag-pol polyprotein OS=Murine leukemia virus GN=gag-pol PE=4 SV=1
64 : Q7ZJT6_9GAMR 1.00 1.00 2 32 350 380 31 0 0 1736 Q7ZJT6 Gag-pro-pol polyprotein (Precursor) OS=Amphotropic murine leukemia virus PE=4 SV=1
65 : Q7ZJT8_9GAMR 1.00 1.00 2 32 350 380 31 0 0 536 Q7ZJT8 Gag polyprotein OS=Amphotropic murine leukemia virus PE=4 SV=1
66 : Q83361_9GAMR 1.00 1.00 2 32 351 381 31 0 0 537 Q83361 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
67 : Q83362_9GAMR 1.00 1.00 2 32 351 381 31 0 0 1736 Q83362 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
68 : Q83371_MLVMO 1.00 1.00 2 32 42 72 31 0 0 560 Q83371 Reverse transcriptase (Fragment) OS=Moloney murine leukemia virus GN=pol PE=4 SV=1
69 : Q83397_9GAMR 1.00 1.00 2 32 351 381 31 0 0 537 Q83397 Putative gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
70 : Q85453_MSVMO 1.00 1.00 2 32 1 31 31 0 0 359 Q85453 3611 raf gene. (Fragment) OS=Moloney murine sarcoma virus PE=4 SV=1
71 : Q86963_9RETR 1.00 1.00 2 32 350 380 31 0 0 536 Q86963 Gag OS=Murine AIDS virus-related provirus GN=gag PE=4 SV=1
72 : Q8UN00_MLVMO 1.00 1.00 2 32 352 382 31 0 0 1738 Q8UN00 Pr180 Gag-Pro-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pro-pol PE=4 SV=1
73 : Q8UN01_MLVMO 1.00 1.00 2 32 352 382 31 0 0 538 Q8UN01 Pr65 Gag polyprotein OS=Moloney murine leukemia virus GN=gag PE=4 SV=1
74 : Q900B1_9GAMR 1.00 1.00 2 32 351 381 31 0 0 537 Q900B1 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
75 : Q9E7M1_9GAMR3SM1 1.00 1.00 2 32 350 380 31 0 0 1733 Q9E7M1 Putative gag-pro-pol polyprotein OS=DG-75 Murine leukemia virus PE=1 SV=1
76 : Q9J0U2_9GAMR 1.00 1.00 2 32 137 167 31 0 0 263 Q9J0U2 Capsid protein (Fragment) OS=Murine leukemia virus PE=4 SV=1
77 : Q9J8E2_9GAMR 1.00 1.00 2 32 351 381 31 0 0 1734 Q9J8E2 Putative gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
78 : Q9Q9A6_9GAMR 1.00 1.00 2 32 351 381 31 0 0 537 Q9Q9A6 Putative gag polyprotein OS=Murine leukemia virus PE=4 SV=1
79 : Q9WHV6_9GAMR3BP9 1.00 1.00 2 32 351 381 31 0 0 537 Q9WHV6 Gag protein OS=Murine leukemia virus PE=4 SV=1
80 : Q9YKA0_9GAMR 1.00 1.00 2 32 348 378 31 0 0 534 Q9YKA0 Gag polypeptide OS=Murine leukemia virus PE=4 SV=1
81 : T2ASM2_9GAMR 1.00 1.00 2 32 350 380 31 0 0 597 T2ASM2 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
82 : T2AUD0_9GAMR 1.00 1.00 2 32 350 380 31 0 0 597 T2AUD0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
83 : T2AUG5_9GAMR 1.00 1.00 2 32 350 380 31 0 0 597 T2AUG5 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
84 : T2AUH0_9GAMR 1.00 1.00 2 32 350 380 31 0 0 597 T2AUH0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
85 : E5RDS6_9GAMR 0.97 1.00 2 32 351 381 31 0 0 1734 E5RDS6 Putative gag-pro-pol polyprotein OS=Murine leukemia virus N417 GN=gag-pro-pol PE=4 SV=1
86 : E5RDS7_9GAMR 0.97 1.00 2 32 351 381 31 0 0 537 E5RDS7 Putative gag protein OS=Murine leukemia virus N417 GN=gag PE=4 SV=1
87 : F2YZK2_9GAMR 0.97 1.00 2 32 350 380 31 0 0 1737 F2YZK2 Putative gag-pol polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
88 : F2YZK3_9GAMR 0.97 1.00 2 32 350 380 31 0 0 536 F2YZK3 Putative gag polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
89 : F8UU35_9GAMR 0.97 1.00 2 32 351 381 31 0 0 1734 F8UU35 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
90 : F8UU38_9GAMR 0.97 1.00 2 32 351 381 31 0 0 1734 F8UU38 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
91 : F8UU39_9GAMR 0.97 1.00 2 32 351 381 31 0 0 537 F8UU39 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
92 : GAG_MLVDE 0.97 1.00 2 32 350 380 31 0 0 536 P29168 Gag polyprotein OS=Murine leukemia virus (strain DEF27) GN=gag PE=3 SV=3
93 : GAG_MLVDU 0.97 0.97 2 32 343 373 31 0 0 529 P23090 Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
94 : Q1KYM1_MOUSE 0.97 1.00 2 32 351 381 31 0 0 537 Q1KYM1 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
95 : Q1KYM2_MOUSE 0.97 1.00 2 32 351 381 31 0 0 1734 Q1KYM2 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
96 : Q4W673_9GAMR 0.97 1.00 2 32 351 381 31 0 0 537 Q4W673 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
97 : Q4W675_9GAMR 0.97 1.00 2 32 351 381 31 0 0 537 Q4W675 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
98 : Q60588_MOUSE 0.97 1.00 2 32 351 381 31 0 0 537 Q60588 Gag protein OS=Mus musculus GN=gag PE=4 SV=2
99 : Q6JWR0_9GAMR 0.97 1.00 2 32 137 167 31 0 0 263 Q6JWR0 Capsid protein (Fragment) OS=Murine leukemia virus PE=2 SV=1
100 : Q83383_9GAMR 0.97 1.00 2 32 351 381 31 0 0 537 Q83383 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=2
101 : Q85654_9GAMR 0.97 0.97 2 32 137 167 31 0 0 263 Q85654 Gag p30 protein (Fragment) OS=Murine leukemia virus PE=4 SV=1
102 : Q85701_9GAMR 0.97 1.00 2 32 105 135 31 0 0 160 Q85701 N-tropic gag region p30 protein (Fv-1 tropism determinant). (Fragment) OS=Murine leukemia virus PE=4 SV=1
103 : Q85734_9GAMR 0.97 1.00 2 32 352 382 31 0 0 538 Q85734 Gag protein OS=Murine type C retrovirus GN=gag PE=4 SV=1
104 : Q8BFR9_MOUSE 0.97 1.00 2 32 351 381 31 0 0 537 Q8BFR9 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
105 : Q8C1W7_MOUSE 0.97 1.00 2 32 351 381 31 0 0 537 Q8C1W7 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
106 : Q85700_9GAMR 0.94 0.97 2 32 105 135 31 0 0 160 Q85700 B-tropic gag region p30 protein (Fv-1 tropism determinant). (Fragment) OS=Murine leukemia virus PE=4 SV=1
107 : Q5PYI2_9GAMR 0.90 1.00 2 32 347 377 31 0 0 533 Q5PYI2 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
108 : Q5PYI3_9GAMR 0.90 1.00 2 32 347 377 31 0 0 1736 Q5PYI3 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
109 : H6WSQ2_9GAMR 0.73 0.87 2 31 383 412 30 0 0 575 H6WSQ2 Gag protein OS=Gammaretrovirus RfRV/China/2011 PE=4 SV=1
110 : G5CA87_HETGA 0.72 0.92 2 26 151 175 25 0 0 234 G5CA87 Gag polyprotein (Fragment) OS=Heterocephalus glaber GN=GW7_08812 PE=4 SV=1
111 : A1YTJ1_9GAMR 0.71 0.87 2 32 338 368 31 0 0 524 A1YTJ1 Gag protein OS=Porcine endogenous retrovirus C GN=gag PE=4 SV=1
112 : A8NBY5_PIG 0.71 0.87 2 32 338 368 31 0 0 524 A8NBY5 Gag protein OS=Sus scrofa PE=4 SV=1
113 : D0E0H1_ORCOR 0.71 0.90 2 32 347 377 31 0 0 527 D0E0H1 Gag protein OS=Orcinus orca GN=gag PE=4 SV=1
114 : F6KPT5_9GAMR 0.71 0.87 2 32 338 368 31 0 0 517 F6KPT5 Gag protein OS=Porcine endogenous retrovirus A PE=4 SV=1
115 : G3XDD7_FLV 0.71 0.87 2 32 412 442 31 0 0 1790 G3XDD7 Gag-pol polyprotein OS=Feline leukemia virus PE=4 SV=1
116 : GAG_FLV 0.71 0.87 2 32 408 438 31 0 0 580 P10262 Gag polyprotein OS=Feline leukemia virus GN=gag PE=3 SV=1
117 : GAG_GALV 0.71 0.84 2 32 339 369 31 0 0 520 P21416 Gag polyprotein OS=Gibbon ape leukemia virus GN=gag PE=3 SV=3
118 : GAG_KORV 0.71 0.84 2 32 340 370 31 0 0 521 Q9TTC2 Gag polyprotein OS=Koala retrovirus GN=gag PE=3 SV=3
119 : GAG_WMSV 0.71 0.84 2 32 340 370 31 0 0 512 P03330 Gag polyprotein OS=Woolly monkey sarcoma virus GN=gag PE=3 SV=3
120 : K0H6P0_FLV 0.71 0.87 2 32 408 438 31 0 0 1786 K0H6P0 Pr80 gag-pol protein (Fragment) OS=Feline leukemia virus PE=4 SV=1
121 : K0IZA4_FLV 0.71 0.87 2 32 412 442 31 0 0 584 K0IZA4 Gag polyprotein OS=Feline leukemia virus GN=gag PE=4 SV=1
122 : K7ZK66_KORV 0.71 0.84 2 32 340 370 31 0 0 1687 K7ZK66 Gag-pol polyprotein OS=Koala retrovirus GN=gag-pol PE=4 SV=1
123 : M3WSK2_FELCA 0.71 0.88 8 31 330 353 24 0 0 400 M3WSK2 Uncharacterized protein OS=Felis catus PE=4 SV=1
124 : M3XFF7_FELCA 0.71 0.87 2 32 335 365 31 0 0 516 M3XFF7 Uncharacterized protein OS=Felis catus PE=4 SV=1
125 : O62704_PIG 0.71 0.87 2 32 338 368 31 0 0 524 O62704 Gag protein OS=Sus scrofa PE=2 SV=1
126 : O62706_PIG 0.71 0.87 2 32 338 368 31 0 0 524 O62706 Gag protein OS=Sus scrofa PE=2 SV=1
127 : O70651_GALV 0.71 0.84 2 32 341 371 31 0 0 522 O70651 Gag polyprotein OS=Gibbon ape leukemia virus GN=gag PE=4 SV=1
128 : O89811_FLV 0.71 0.87 2 32 408 438 31 0 0 1786 O89811 Gag-pol polyprotein gPr80 OS=Feline leukemia virus PE=4 SV=1
129 : Q08GP8_PIG 0.71 0.87 2 32 105 135 31 0 0 1254 Q08GP8 Polyprotein (Fragment) OS=Sus scrofa PE=4 SV=1
130 : Q08GQ0_PIG 0.71 0.87 2 32 338 368 31 0 0 1719 Q08GQ0 Polyprotein (Precursor) OS=Sus scrofa PE=4 SV=1
131 : Q5QGQ9_9GAMR 0.71 0.87 2 32 338 368 31 0 0 524 Q5QGQ9 Gag protein OS=Porcine endogenous retrovirus C/A PE=4 SV=1
132 : Q62700_RAT 0.71 0.84 2 32 348 378 31 0 0 427 Q62700 P58 OS=Rattus norvegicus GN=LOC207121 PE=2 SV=1
133 : Q83378_9GAMR 0.71 0.84 2 32 348 378 31 0 0 517 Q83378 Gag protein OS=Rat leukemia virus GN=gag PE=4 SV=1
134 : R4JJB0_PIG 0.71 0.87 2 32 338 368 31 0 0 521 R4JJB0 Gag protein OS=Sus scrofa PE=4 SV=1
135 : R4JTP7_PIG 0.71 0.87 2 32 338 368 31 0 0 521 R4JTP7 Gag protein OS=Sus scrofa PE=4 SV=1
136 : S0AU94_KORV 0.71 0.84 2 32 340 370 31 0 0 1687 S0AU94 Gag-pol polyprotein OS=Koala retrovirus PE=4 SV=1
137 : S4X6K5_MUSCR 0.71 0.84 2 32 418 448 31 0 0 599 S4X6K5 Gag protein OS=Mus caroli PE=4 SV=1
138 : U3KIH2_FICAL 0.71 0.83 7 30 42 65 24 0 0 108 U3KIH2 Uncharacterized protein (Fragment) OS=Ficedula albicollis PE=4 SV=1
139 : U5Y0R9_FLV 0.71 0.87 2 32 137 167 31 0 0 248 U5Y0R9 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
140 : U5Y1I6_FLV 0.71 0.87 2 32 137 167 31 0 0 248 U5Y1I6 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
141 : U5Y3K1_FLV 0.71 0.87 2 32 137 167 31 0 0 248 U5Y3K1 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
142 : U5Y3S4_FLV 0.71 0.87 2 32 137 167 31 0 0 248 U5Y3S4 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
143 : U5Y3T3_FLV 0.71 0.87 2 32 137 167 31 0 0 248 U5Y3T3 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
144 : Q6TXG6_RAT 0.69 0.83 4 32 129 157 29 0 0 2042 Q6TXG6 LRRGT00033 OS=Rattus norvegicus PE=2 SV=1
145 : B3VQ65_PIG 0.68 0.87 2 32 338 368 31 0 0 1313 B3VQ65 Putative gag-pol polyprotein OS=Sus scrofa PE=4 SV=1
146 : C0IV21_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 C0IV21 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
147 : E2FK50_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 E2FK50 Gag protein OS=Porcine endogenous retrovirus C GN=gag PE=2 SV=1
148 : F6KPU1_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 F6KPU1 Gag protein OS=Porcine endogenous retrovirus B PE=4 SV=1
149 : F8S319_PIG 0.68 0.87 2 32 338 368 31 0 0 524 F8S319 Gag protein OS=Sus scrofa PE=4 SV=1
150 : F8S323_PIG 0.68 0.87 2 32 338 368 31 0 0 524 F8S323 Gag protein OS=Sus scrofa PE=4 SV=1
151 : F8S326_PIG 0.68 0.87 2 32 338 368 31 0 0 524 F8S326 Gag protein OS=Sus scrofa PE=4 SV=1
152 : F8S333_PIG 0.68 0.87 2 32 338 368 31 0 0 524 F8S333 Gag protein OS=Sus scrofa PE=4 SV=1
153 : F8S339_PIG 0.68 0.87 2 32 338 368 31 0 0 524 F8S339 Gag protein OS=Sus scrofa PE=4 SV=1
154 : F9W9X8_TRYCI 0.68 0.81 2 32 65 95 31 0 0 245 F9W9X8 WGS project CAEQ00000000 data, annotated contig 1910 OS=Trypanosoma congolense (strain IL3000) GN=TCIL3000_0_47130 PE=4 SV=1
155 : F9WE52_TRYCI 0.68 0.81 2 32 328 358 31 0 0 508 F9WE52 WGS project CAEQ00000000 data, annotated contig 2441 OS=Trypanosoma congolense (strain IL3000) GN=TCIL3000_0_60500 PE=4 SV=1
156 : GAG_FSVMD 0.68 0.87 2 32 411 441 31 0 0 536 P03340 Gag polyprotein OS=Feline sarcoma virus (strain McDonough) GN=gag PE=3 SV=1
157 : I3L9T4_PIG 0.68 0.87 2 32 338 368 31 0 0 524 I3L9T4 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
158 : I3LAE0_PIG 0.68 0.87 2 32 338 368 31 0 0 524 I3LAE0 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
159 : I3LB18_PIG 0.68 0.87 2 32 338 368 31 0 0 524 I3LB18 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
160 : I3LFM9_PIG 0.68 0.87 2 32 338 368 31 0 0 524 I3LFM9 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
161 : I3LKL5_PIG 0.68 0.87 2 32 333 363 31 0 0 519 I3LKL5 Uncharacterized protein (Fragment) OS=Sus scrofa PE=4 SV=1
162 : I7HEG0_FLV 0.68 0.87 2 32 423 453 31 0 0 595 I7HEG0 Gag protein OS=Feline leukemia virus GN=gag PE=4 SV=1
163 : K0H563_FLV 0.68 0.84 2 32 408 438 31 0 0 1786 K0H563 Pr80 gag polyprotein (Fragment) OS=Feline leukemia virus PE=4 SV=1
164 : O62708_PIG 0.68 0.87 2 32 338 368 31 0 0 524 O62708 Gag protein OS=Sus scrofa PE=2 SV=1
165 : O73504_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 O73504 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
166 : O89814_9GAMR 0.68 0.81 2 32 442 472 31 0 0 622 O89814 Glycosylated gag protein OS=Mus dunni endogenous virus GN=gag PE=4 SV=1
167 : Q4VFZ3_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q4VFZ3 Gag protein OS=Porcine endogenous retrovirus C/A GN=gag PE=4 SV=1
168 : Q6T3V4_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q6T3V4 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
169 : Q6T3V5_9GAMR 0.68 0.87 2 32 338 368 31 0 0 525 Q6T3V5 Gag protein (Fragment) OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
170 : Q6UJZ2_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q6UJZ2 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
171 : Q6UJZ3_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q6UJZ3 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
172 : Q6UJZ5_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q6UJZ5 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
173 : Q7ZL05_9GAMR 0.68 0.81 2 32 348 378 31 0 0 521 Q7ZL05 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
174 : Q7ZL07_9GAMR 0.68 0.81 2 32 348 378 31 0 0 521 Q7ZL07 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
175 : Q85521_FLV 0.68 0.87 2 32 408 438 31 0 0 1784 Q85521 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
176 : Q8J4V6_9GAMR 0.68 0.87 2 32 338 368 31 0 0 1720 Q8J4V6 Gag-pol polyprotein OS=Porcine endogenous retrovirus B PE=4 SV=1
177 : Q8J4V8_9GAMR 0.68 0.87 2 32 338 368 31 0 0 1718 Q8J4V8 Gag-pol polyprotein OS=Porcine endogenous retrovirus A PE=4 SV=1
178 : Q8UMA0_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q8UMA0 Group specific antigen OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
179 : Q8UMP6_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q8UMP6 Gag OS=Porcine endogenous retrovirus PE=4 SV=1
180 : Q90RL7_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q90RL7 Group specific antigen OS=Porcine endogenous retrovirus C GN=gag PE=4 SV=1
181 : Q90RM0_9GAMR 0.68 0.87 2 32 338 368 31 0 0 524 Q90RM0 Group specific antigen OS=Porcine endogenous retrovirus C GN=gag PE=4 SV=1
182 : Q9N1T7_PIG 0.68 0.87 2 32 338 368 31 0 0 664 Q9N1T7 Gag-pol (Fragment) OS=Sus scrofa domesticus PE=4 SV=1
183 : Q9Q1X3_9GAMR 0.68 0.87 2 32 338 368 31 0 0 2376 Q9Q1X3 Type C proviral gag, pol and env genes and LTR (class B, clone 43) OS=Porcine endogenous retrovirus PE=4 SV=1
184 : Q9Q1X4_9GAMR 0.68 0.87 2 32 338 368 31 0 0 2378 Q9Q1X4 Type C proviral gag, pol and env genesand LTR (class A, clone 42) OS=Porcine endogenous retrovirus PE=4 SV=1
185 : Q9Q1X5_9GAMR 0.68 0.87 2 32 338 368 31 0 0 2376 Q9Q1X5 Type C proviral gag, pol and env genes and LTR (class B, clone 33) OS=Porcine endogenous retrovirus PE=4 SV=1
186 : Q9WLL1_9GAMR 0.68 0.81 2 32 342 372 31 0 0 522 Q9WLL1 Gag protein OS=Mus dunni endogenous virus GN=gag PE=4 SV=1
187 : U5Y0J2_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y0J2 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
188 : U5Y0S6_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y0S6 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
189 : U5Y1I2_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y1I2 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
190 : U5Y1J0_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y1J0 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
191 : U5Y3J5_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y3J5 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
192 : U5Y3S9_FLV 0.68 0.87 2 32 137 167 31 0 0 248 U5Y3S9 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
193 : G9I7G8_ODOHE 0.67 0.83 2 31 346 375 30 0 0 548 G9I7G8 Gag polyprotein OS=Odocoileus hemionus GN=gag PE=4 SV=1
194 : M3X3F3_FELCA 0.67 0.83 2 31 324 353 30 0 0 416 M3X3F3 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
195 : M3X4Y9_FELCA 0.67 0.80 2 31 316 345 30 0 0 460 M3X4Y9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
196 : M3X5T5_FELCA 0.67 0.80 2 31 238 267 30 0 0 416 M3X5T5 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
197 : M3X929_FELCA 0.67 0.80 2 31 292 321 30 0 0 384 M3X929 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
198 : G3I355_CRIGR 0.66 0.76 2 30 25 53 29 0 0 179 G3I355 Gag polyprotein OS=Cricetulus griseus GN=I79_017856 PE=4 SV=1
199 : D6PV10_9GAMR 0.65 0.84 2 32 338 368 31 0 0 524 D6PV10 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
200 : F6KPT8_9GAMR 0.65 0.87 2 32 338 368 31 0 0 524 F6KPT8 Gag protein OS=Porcine endogenous retrovirus A PE=4 SV=1
201 : F6KPU6_9GAMR 0.65 0.84 2 32 338 368 31 0 0 524 F6KPU6 Gag protein OS=Porcine endogenous retrovirus B PE=4 SV=1
202 : F8S328_PIG 0.65 0.84 2 32 338 368 31 0 0 524 F8S328 Gag protein OS=Sus scrofa PE=4 SV=1
203 : F9W4M9_TRYCI 0.65 0.81 2 32 337 367 31 0 0 473 F9W4M9 WGS project CAEQ00000000 data, annotated contig 1205 OS=Trypanosoma congolense (strain IL3000) GN=TCIL3000_0_30370 PE=4 SV=1
204 : GAG_BAEVM 0.65 0.87 2 32 362 392 31 0 0 537 P03341 Gag polyprotein OS=Baboon endogenous virus (strain M7) GN=gag PE=3 SV=4
205 : I6R7B0_9GAMR 0.65 0.84 2 32 362 392 31 0 0 543 I6R7B0 Gag (Fragment) OS=Rousettus leschenaultii retrovirus PE=2 SV=1
206 : Q05CR0_MOUSE 0.65 0.84 2 32 268 298 31 0 0 365 Q05CR0 LOC72520 protein (Fragment) OS=Mus musculus GN=LOC72520 PE=2 SV=1
207 : Q7ZBT7_9GAMR 0.65 0.87 2 32 338 368 31 0 0 524 Q7ZBT7 Gag protein OS=Porcine endogenous retrovirus GN=gag PE=2 SV=1
208 : Q811J2_MOUSE 0.65 0.84 2 32 400 430 31 0 0 496 Q811J2 LOC72520 protein (Fragment) OS=Mus musculus GN=LOC72520 PE=2 SV=2
209 : Q8Q6U8_9GAMR 0.65 0.87 2 32 338 368 31 0 0 524 Q8Q6U8 Group specific antigen OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
210 : Q8UM97_9GAMR 0.65 0.84 2 32 338 368 31 0 0 524 Q8UM97 Group specific antigen OS=Porcine endogenous retrovirus GN=gag PE=4 SV=1
211 : M3WUS2_FELCA 0.63 0.80 2 31 23 52 30 0 0 119 M3WUS2 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
212 : M3WVK4_FELCA 0.63 0.80 2 31 339 368 30 0 0 522 M3WVK4 Uncharacterized protein OS=Felis catus PE=4 SV=1
213 : M3WZM6_FELCA 0.63 0.83 2 31 357 386 30 0 0 522 M3WZM6 Uncharacterized protein OS=Felis catus PE=4 SV=1
214 : M3X3B8_FELCA 0.63 0.80 2 31 329 358 30 0 0 515 M3X3B8 Uncharacterized protein OS=Felis catus PE=4 SV=1
215 : M3X6V3_FELCA 0.63 0.80 2 31 331 360 30 0 0 512 M3X6V3 Uncharacterized protein OS=Felis catus PE=4 SV=1
216 : M3XCR3_FELCA 0.63 0.77 2 31 281 310 30 0 0 429 M3XCR3 Uncharacterized protein OS=Felis catus PE=4 SV=1
217 : M3XDP9_FELCA 0.63 0.77 2 31 23 52 30 0 0 115 M3XDP9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
218 : A7KMF4_9GAMR 0.61 0.84 2 32 375 405 31 0 0 1740 A7KMF4 Gag-Pol polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
219 : A7KMF5_9GAMR 0.61 0.84 2 32 375 405 31 0 0 550 A7KMF5 Gag polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
220 : A7LKA6_9GAMR 0.61 0.84 2 32 375 405 31 0 0 1739 A7LKA6 Gag-pol polyprotein OS=RD114 retrovirus GN=gag PE=4 SV=1
221 : E0D6V1_9GAMR 0.61 0.84 2 32 375 405 31 0 0 1740 E0D6V1 Gag-Pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
222 : G3GSE2_CRIGR 0.61 0.87 2 32 362 392 31 0 0 538 G3GSE2 Gag polyprotein OS=Cricetulus griseus GN=I79_000465 PE=4 SV=1
223 : I3LMY6_PIG 0.61 0.77 2 32 337 367 31 0 0 495 I3LMY6 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
224 : I3LS57_PIG 0.61 0.74 2 32 296 326 31 0 0 443 I3LS57 Uncharacterized protein (Fragment) OS=Sus scrofa PE=4 SV=1
225 : I4DHB5_9GAMR 0.61 0.84 2 32 375 405 31 0 0 1740 I4DHB5 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
226 : I4DHB7_9GAMR 0.61 0.84 2 32 375 405 31 0 0 1740 I4DHB7 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
227 : I6RYC7_9GAMR 0.61 0.77 2 32 5 35 31 0 0 194 I6RYC7 Gag (Fragment) OS=Megaderma lyra retrovirus PE=2 SV=1
228 : I7GU46_FELCA 0.61 0.84 2 32 383 413 31 0 0 1749 I7GU46 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
229 : I7GU47_FELCA 0.61 0.84 2 32 383 413 31 0 0 558 I7GU47 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
230 : I7GZT4_FELCA 0.61 0.84 2 32 372 402 31 0 0 1737 I7GZT4 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
231 : I7HGJ5_FELCA 0.61 0.84 2 32 383 413 31 0 0 1748 I7HGJ5 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
232 : M3WVQ0_FELCA 0.61 0.84 2 32 349 379 31 0 0 408 M3WVQ0 Uncharacterized protein OS=Felis catus PE=4 SV=1
233 : M3X1J6_FELCA 0.61 0.84 2 32 338 368 31 0 0 453 M3X1J6 Uncharacterized protein OS=Felis catus PE=4 SV=1
234 : M3X1Y6_FELCA 0.61 0.84 2 32 360 390 31 0 0 508 M3X1Y6 Uncharacterized protein OS=Felis catus PE=4 SV=1
235 : G1KNX4_ANOCA 0.60 0.83 3 32 331 360 30 0 0 498 G1KNX4 Uncharacterized protein (Fragment) OS=Anolis carolinensis PE=4 SV=1
236 : G1KPH9_ANOCA 0.60 0.83 3 32 332 361 30 0 0 499 G1KPH9 Uncharacterized protein (Fragment) OS=Anolis carolinensis PE=4 SV=1
237 : L7MZL0_ANOCA 0.60 0.83 3 32 365 394 30 0 0 537 L7MZL0 Uncharacterized protein (Fragment) OS=Anolis carolinensis PE=4 SV=1
238 : M3WQ20_FELCA 0.60 0.83 2 31 339 368 30 0 0 464 M3WQ20 Uncharacterized protein OS=Felis catus PE=4 SV=1
239 : M3WS43_FELCA 0.60 0.77 2 31 23 52 30 0 0 124 M3WS43 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
240 : M3WV02_FELCA 0.60 0.83 2 31 358 387 30 0 0 512 M3WV02 Uncharacterized protein OS=Felis catus PE=4 SV=1
241 : M3WYE3_FELCA 0.60 0.77 2 31 340 369 30 0 0 1326 M3WYE3 Uncharacterized protein OS=Felis catus PE=4 SV=1
242 : M3X0L9_FELCA 0.60 0.84 2 26 340 364 25 0 0 514 M3X0L9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
243 : M3X1L4_FELCA 0.60 0.80 7 31 333 357 25 0 0 1247 M3X1L4 Uncharacterized protein OS=Felis catus PE=4 SV=1
244 : M3X372_FELCA 0.60 0.83 2 31 351 380 30 0 0 508 M3X372 Uncharacterized protein OS=Felis catus PE=4 SV=1
245 : M3X6N5_FELCA 0.60 0.77 2 31 321 350 30 0 0 486 M3X6N5 Uncharacterized protein OS=Felis catus PE=4 SV=1
246 : M3X778_FELCA 0.60 0.80 2 31 240 269 30 0 0 393 M3X778 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
247 : M3XCG6_FELCA 0.60 0.83 2 31 260 289 30 0 0 343 M3XCG6 Uncharacterized protein OS=Felis catus PE=4 SV=1
248 : M3XE88_FELCA 0.60 0.83 2 31 356 385 30 0 0 515 M3XE88 Uncharacterized protein OS=Felis catus PE=4 SV=1
249 : R4G9H4_ANOCA 0.60 0.83 3 32 269 298 30 0 0 478 R4G9H4 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
250 : R4GA64_ANOCA 0.60 0.83 3 32 392 421 30 0 0 601 R4GA64 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
251 : R4GAE6_ANOCA 0.60 0.83 3 32 392 421 30 0 0 601 R4GAE6 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
252 : R4GBG9_ANOCA 0.60 0.83 3 32 173 202 30 0 0 382 R4GBG9 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
253 : R4GBJ9_ANOCA 0.60 0.83 3 32 374 403 30 0 0 583 R4GBJ9 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
254 : R4GBK8_ANOCA 0.60 0.83 3 32 392 421 30 0 0 601 R4GBK8 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
255 : R4GBP9_ANOCA 0.60 0.83 3 32 392 421 30 0 0 601 R4GBP9 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
256 : R4GCT4_ANOCA 0.60 0.83 3 32 393 422 30 0 0 602 R4GCT4 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
257 : R4GCV7_ANOCA 0.60 0.83 3 32 177 206 30 0 0 335 R4GCV7 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
258 : R4GCZ3_ANOCA 0.60 0.83 3 32 374 403 30 0 0 583 R4GCZ3 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
259 : R4GD33_ANOCA 0.60 0.83 3 32 177 206 30 0 0 386 R4GD33 Uncharacterized protein OS=Anolis carolinensis PE=4 SV=1
260 : T2FGY7_9GAMR 0.60 0.80 2 31 342 371 30 0 0 507 T2FGY7 Gag protein OS=Galidia ERV GN=gag PE=4 SV=1
261 : I3LGU1_PIG 0.58 0.68 2 32 326 356 31 0 0 391 I3LGU1 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
262 : M3WS48_FELCA 0.57 0.73 2 31 333 362 30 0 0 515 M3WS48 Uncharacterized protein OS=Felis catus PE=4 SV=1
263 : M3X273_FELCA 0.57 0.80 2 31 329 358 30 0 0 515 M3X273 Uncharacterized protein OS=Felis catus PE=4 SV=1
264 : M3X4F0_FELCA 0.57 0.77 2 31 321 350 30 0 0 505 M3X4F0 Uncharacterized protein OS=Felis catus PE=4 SV=1
265 : M3XDP1_FELCA 0.57 0.73 2 31 237 266 30 0 0 417 M3XDP1 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
266 : M3XF72_FELCA 0.57 0.77 2 31 331 360 30 0 0 516 M3XF72 Uncharacterized protein OS=Felis catus PE=4 SV=1
267 : M3XFY4_FELCA 0.57 0.83 2 31 346 375 30 0 0 1324 M3XFY4 Uncharacterized protein OS=Felis catus PE=4 SV=1
268 : T2FFA1_9GAMR 0.57 0.77 2 31 339 368 30 0 0 497 T2FFA1 Gag protein OS=Echidna ERV GN=gag PE=4 SV=1
269 : M3WTI6_FELCA 0.55 0.69 3 31 260 288 29 0 0 443 M3WTI6 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
270 : M3X7Z3_FELCA 0.55 0.69 3 31 256 284 29 0 0 435 M3X7Z3 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
271 : L8HZY2_9CETA 0.54 0.79 3 30 248 275 28 0 0 422 L8HZY2 Uncharacterized protein (Fragment) OS=Bos mutus GN=M91_13164 PE=4 SV=1
272 : M3WSG9_FELCA 0.52 0.74 2 32 320 350 31 0 0 399 M3WSG9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
273 : M3XC86_FELCA 0.52 0.74 2 32 268 298 31 0 0 303 M3XC86 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
274 : B7U6K7_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 B7U6K7 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
275 : C7FGW7_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 C7FGW7 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
276 : K7S4S2_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 K7S4S2 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
277 : O36448_FOWPV 0.50 0.80 2 31 342 371 30 0 0 499 O36448 Gag OS=Fowlpox virus GN=gag PE=4 SV=1
278 : Q1A1A9_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 Q1A1A9 Gag protein OS=Avian reticuloendotheliosis virus PE=4 SV=1
279 : Q462R0_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 Q462R0 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
280 : Q5G5J9_AVIRE 0.50 0.80 2 31 343 372 30 0 0 500 Q5G5J9 Gag protein OS=Avian reticuloendotheliosis virus PE=4 SV=1
281 : Q7ZGS4_9RETR 0.50 0.73 3 32 342 371 30 0 0 523 Q7ZGS4 Retroviral gag protein OS=Human endogenous retrovirus HCML-ARV PE=4 SV=1
282 : Q80JG8_FOWPV 0.50 0.80 2 31 342 371 30 0 0 499 Q80JG8 Gag protein (Precursor) OS=Fowlpox virus PE=4 SV=1
283 : Q86UH9_HUMAN 0.50 0.73 3 32 342 371 30 0 0 523 Q86UH9 Gag protein OS=Homo sapiens PE=4 SV=1
284 : S5VPZ4_AVIRE 0.50 0.80 2 31 342 371 30 0 0 499 S5VPZ4 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
285 : T2FFW2_9GAMR 0.50 0.80 2 31 342 371 30 0 0 499 T2FFW2 Gag protein OS=Duck infectious anemia virus GN=gag PE=4 SV=1
286 : V9SHF1_AVIRE 0.50 0.80 2 31 334 363 30 0 0 491 V9SHF1 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A C 0 0 124 1 0
2 2 A A + 0 0 95 264 18 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 3 A K S S+ 0 0 186 283 14 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
4 4 A V + 0 0 108 284 11 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
5 5 A K > + 0 0 126 284 67 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
6 6 A G T 3 S- 0 0 70 284 61 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7 7 A I T 3 >S+ 0 0 102 286 17 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
8 8 A T T < 5 + 0 0 96 287 81 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9 9 A Q T 5S+ 0 0 169 287 3 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
10 10 A G T > 5S- 0 0 6 287 17 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
11 11 A P G > 5S- 0 0 89 287 61 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
12 12 A N G 3 S+ 0 0 123 287 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
14 14 A S H <> S+ 0 0 80 287 43 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
15 15 A P H >> S+ 0 0 69 287 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
16 16 A S H 3> S+ 0 0 34 287 52 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
17 17 A A H 3X S+ 0 0 24 287 50 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 18 A F H X S+ 0 0 35 287 12 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26 26 A Y H 3< S+ 0 0 110 287 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
27 27 A R H >< S+ 0 0 108 285 6 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
28 28 A R H << S+ 0 0 200 285 67 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
29 29 A Y T 3< S+ 0 0 156 285 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
30 30 A T S < S- 0 0 71 285 20 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
31 31 A P 0 0 124 282 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
32 32 A Y 0 0 240 237 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A C 0 0 124 1 0
2 2 A A + 0 0 95 264 18 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAA AA
3 3 A K S S+ 0 0 186 283 14 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQKKKQQK QKKKQKKKQQKKKK QQ
4 4 A V + 0 0 108 284 11 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV VVVVVVVVVVVVVV VV
5 5 A K > + 0 0 126 284 67 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRKGRRRRKKRRRKKR KRRRKRRRKKRRRR KK
6 6 A G T 3 S- 0 0 70 284 61 GGGGGGGGGGGGGGGGGGGGGGRGGGGGGGRGGGGGGGADEEEEQQEEEQQE QEEEQEEEQQEEEE QQ
7 7 A I T 3 >S+ 0 0 102 286 17 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVVIIVVVVVVVVVVVV VVVVVVVVVVVVVVVVV
8 8 A T T < 5 + 0 0 96 287 81 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTMQMMTMVVLLLVVLVVMMLVMMMVVMMLLRVV
9 9 A Q T 5S+ 0 0 169 287 3 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
10 10 A G T > 5S- 0 0 6 287 17 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEGGGGEGG
11 11 A P G > 5S- 0 0 89 287 61 PPPPPPPPPPPPPPSSSSSSSPPPPPPPPSPPSPPPPPDPPPPPKKPPPKKPPKPPPKPPPAAPPPPKKK
12 12 A N G 3 S+ 0 0 123 287 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
14 14 A S H <> S+ 0 0 80 287 43 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPPSPTTPPPTTPSTPPPTPPPTTPPPPSTT
15 15 A P H >> S+ 0 0 69 287 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
16 16 A S H 3> S+ 0 0 34 287 52 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAASSTSAASSSAASAASSSASSSSSSSSSSAA
17 17 A A H 3X S+ 0 0 24 287 50 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAVVVVAAVVVAAVAAVVVAVVVAAVVVVTAA
18 18 A F H X S+ 0 0 35 287 12 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAA
26 26 A Y H 3< S+ 0 0 110 287 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFFFFYYYYYYYYYYFFYYFFFYYFFYYAYY
27 27 A R H >< S+ 0 0 108 285 6 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RRRRRRRRRRRRHRRRRRRRRRRRRRRRRR
28 28 A R H << S+ 0 0 200 285 67 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQ RRRRMMRRRMMRLMRRRMRRRMMRRRRRMM
29 29 A Y T 3< S+ 0 0 156 285 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYFYYYYYYYYYYYYYYYYYYYYYYYYYYY
30 30 A T S < S- 0 0 71 285 20 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTSTTTTTTTTTTTTTTTTT
31 31 A P 0 0 124 282 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPPPPPPPPPP PP
32 32 A Y 0 0 240 237 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY FFYFYYFFFYYF YFFFYFFFYYFFFF YY
## ALIGNMENTS 141 - 210
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A C 0 0 124 1 0
2 2 A A + 0 0 95 264 18 AAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASSASSAAAAAAAAAAAA
3 3 A K S S+ 0 0 186 283 14 QQQ KKKKKKKKKKKQKKKKKQQKKKKKKKKKQQQKKKKKKKKKKKQQQQQQKKKKKKKKKKKKKKKKKK
4 4 A V + 0 0 108 284 11 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
5 5 A K > + 0 0 126 284 67 KKKKRRRRRRRRRRRKRRRRRKKRRRRRRRRRKKKRRRRRRRRRRRKKKKKKNTTGTSRRRRRRRRRRRR
6 6 A G T 3 S- 0 0 70 284 61 QQQQEEEEEEEEEEEQEEEEEQQEEEEEEEEEQQQEEEEEEEEEEEQQQQQQLEKNENEEEEETEEEEEE
7 7 A I T 3 >S+ 0 0 102 286 17 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVTVVVVVIVVVVMV
8 8 A T T < 5 + 0 0 96 287 81 VVVLMMMMMMMMMLLVMMMMMVVMMLMMMMMMVVVMMMMMMMMMMLVVVVVVRIVQVRMMMMLTIMMMMM
9 9 A Q T 5S+ 0 0 169 287 3 QQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQ
10 10 A G T > 5S- 0 0 6 287 17 GGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEGGGGGGGGGGGGGGGGGGEGGGGSGGGGGGGGGGGG
11 11 A P G > 5S- 0 0 89 287 61 KKKAPPPPPPPPPQQKPPPPPKKPPQPPPPPPAAKPPPPPPPPPPQKKKKKKPAIKTRPPPPQKAAPAPP
12 12 A N G 3 S+ 0 0 123 287 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKEEEEEEDK
14 14 A S H <> S+ 0 0 80 287 43 TTTTPPPPPPPPPPPTPPPPPTTPPPPPPPPPTTTPPPPPPPPPPPTTTTTTSSSSSSPPPPPSPPPPPP
15 15 A P H >> S+ 0 0 69 287 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
16 16 A S H 3> S+ 0 0 34 287 52 AAASSSSSSSSSSSSASSSSSAASSSSSSSSSSSASSSSSSSSSSSAAAAAAASSASTLSSSSASSPSSS
17 17 A A H 3X S+ 0 0 24 287 50 AAATVVVVVVVVVVVSVVVVVSAVVVVVVVVVAASVVVVVVVVVVVSSSSSSAAAAAAVVVVVAVVVVVV
18 18 A F H X S+ 0 0 35 287 12 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA
26 26 A Y H 3< S+ 0 0 110 287 4 YYYYFFFFFFFFFYYYFFFFFYYFFYFFFFFFYYYFFFFFFFFFFYYYYYYYFYYFYYFFFFYFFYFYFF
27 27 A R H >< S+ 0 0 108 285 6 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRKRR
28 28 A R H << S+ 0 0 200 285 67 MMMMRRRRRRRRRRRMRRRRRMMRRRRRRRRRMMMRRRRRRRRRRRMMMMMMQTTTTERRRRRMRRRRRR
29 29 A Y T 3< S+ 0 0 156 285 6 YYYYFFFFFFFFFYYYFFFFFYYFFYYFFFFFYYYFFFFFFFFFFYYYYYYYYFFYFYFFFFYYYYFYFF
30 30 A T S < S- 0 0 71 285 20 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
31 31 A P 0 0 124 282 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPP
32 32 A Y 0 0 240 237 4 YYYYFFFFFFFFFFFYFFFFFYYFFFFFFFFFYYYFFFFFFFFFFFYYYYYY FFFFFFFFFFFF
## ALIGNMENTS 211 - 280
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....2....:....3....:....4....:....5....:....6....:....7....:....8
1 1 A C 0 0 124 1 0
2 2 A A + 0 0 95 264 18 AAAAASSAAAAAAAAAAAAAAAAA ASAAA AASTA SAAAAAAAS TSSSSSSSS
3 3 A K S S+ 0 0 186 283 14 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK KKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKK
4 4 A V + 0 0 108 284 11 VVVVVVVVVVVVIIVVVVVVVVVVIIIVVVVV VVVIVIIIIIIIIIIIVTVVVVVVITTVITIIIIIII
5 5 A K > + 0 0 126 284 67 YGYGGTTRRRRRRSRRRRRRRRRRQQQYTYGR YGGHYQQQQQQQQQQQTSGGGGGYTSSQSSTTTTTTT
6 6 A G T 3 S- 0 0 70 284 61 SNSNNEETTTTAEETTETTTTTTTGGGSESNT SNNDSGGGGGGGGGGGEENNNNNSEEENEEEEEEEEE
7 7 A I T 3 >S+ 0 0 102 286 17 VVIVVVVIIIIVIIIIVIIIIIIIVVVVVVVIVVVVTVVVVVVVVVVVVVIVVVVVVVVVVVVVVVVVVV
8 8 A T T < 5 + 0 0 96 287 81 IQVQQVVIIIIVLLIILIIIIIIIVVVIVIQIIIQQVVVVVVVVVVVVVRPQQQQQIRLLRPHRRRRRRR
9 9 A Q T 5S+ 0 0 169 287 3 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQQQQQQQQQQQQ
10 10 A G T > 5S- 0 0 6 287 17 GGGGGGGGGGGGEEGGRGGGGGGGEEEGGGEGGGEGGGEEEEEEEEEEEGEGGGGGGGGGGKGGGGGGGG
11 11 A P G > 5S- 0 0 89 287 61 KKKKKTIKKKKLPPKKPKKKKKKKKKKKTKKKKKKKPKKKKKKKKKKKKPPKKKKKKPPPQPPAAAAAAA
12 12 A N G 3 S+ 0 0 123 287 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKEEEEEEEEEE
14 14 A S H <> S+ 0 0 80 287 43 SSSSSSSSSSSTSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSCSSSSSSSSS
15 15 A P H >> S+ 0 0 69 287 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLPPPLPPPPPPPPPPPPPP
16 16 A S H 3> S+ 0 0 34 287 52 AAAAPSSAAAAAAAAASAAAAAAATTTASAAAAAGAAATTTTTTTTTTTTVAAAAAATSSYAGTTTTTTT
17 17 A A H 3X S+ 0 0 24 287 50 NAAAAAAAAAAGKKAAMAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAKAAAAAAAQQTDQAAAAAAA
18 18 A F H X S+ 0 0 35 287 12 AAAAAVAGGGGAAAGGTGGGGGGGAAATATAGATAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAA
26 26 A Y H 3< S+ 0 0 110 287 4 FFFFFYYFFFFYFFFFYFFFFFFFYYYFYFFFFFFFFFYYYYYYYYYYYYFFFFFFFYFFFFFYYYYYYY
27 27 A R H >< S+ 0 0 108 285 6 RRRRRRHRRRRRRRRRRRRRRRRRRRRRLRR RRRRRRRRRRRRRRRRRRRCRRYRRRHHRRRRRRRRRR
28 28 A R H << S+ 0 0 200 285 67 QTQTTTTMMMMMTTMMRMMMMMMMKKKQIQT QQTTLQKKKKKKKKKKKTITTTTTQTLLKVLTTTTTTT
29 29 A Y T 3< S+ 0 0 156 285 6 YYFYYFSYYYYYYYYYYYYYYYYYYYYYFYY FYYYYFYYYYYYYYYYYWYYYYYYFWYYYYYWWWWWWW
30 30 A T S < S- 0 0 71 285 20 TTTTTTTTTTTTTTTTTTTTTTTTSSSTTTT TTTTSTSSSSSSSSSSSTTTTTTTTTTTTTTSSSSSSS
31 31 A P 0 0 124 282 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPAPPPPPPPPP PPPPPPPPP
32 32 A Y 0 0 240 237 4 FFFFFFFFFFFFFFFFFYYY YYYYYYYYYYY F FF
## ALIGNMENTS 281 - 286
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....9....:....0....:....1....:....2....:....3....:....4....:....5
1 1 A C 0 0 124 1 0
2 2 A A + 0 0 95 264 18 S SSS
3 3 A K S S+ 0 0 186 283 14 KKKKKK
4 4 A V + 0 0 108 284 11 VIVIII
5 5 A K > + 0 0 126 284 67 STSTTT
6 6 A G T 3 S- 0 0 70 284 61 EEEEEE
7 7 A I T 3 >S+ 0 0 102 286 17 VVVVVV
8 8 A T T < 5 + 0 0 96 287 81 IRIRRR
9 9 A Q T 5S+ 0 0 169 287 3 RQRQQQ
10 10 A G T > 5S- 0 0 6 287 17 GGGGGG
11 11 A P G > 5S- 0 0 89 287 61 KAKAAA
12 12 A N G 3 S+ 0 0 123 287 3 EEEEEE
14 14 A S H <> S+ 0 0 80 287 43 SSSSSS
15 15 A P H >> S+ 0 0 69 287 2 PPPPPP
16 16 A S H 3> S+ 0 0 34 287 52 ATATTT
17 17 A A H 3X S+ 0 0 24 287 50 QAQAAA
18 18 A F H X S+ 0 0 35 287 12 GAGAAA
26 26 A Y H 3< S+ 0 0 110 287 4 YYYYYY
27 27 A R H >< S+ 0 0 108 285 6 RRRRRR
28 28 A R H << S+ 0 0 200 285 67 MTMTTT
29 29 A Y T 3< S+ 0 0 156 285 6 YWYWWW
30 30 A T S < S- 0 0 71 285 20 TSTSSS
31 31 A P 0 0 124 282 0 PPPPPP
32 32 A Y 0 0 240 237 4 F F
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 91 0 8 1 0 0 0 0 0 0 0 0 264 0 0 0.331 11 0.81
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 9 0 0 0 283 0 0 0.322 10 0.85
4 4 A 88 0 11 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 284 0 0 0.410 13 0.89
5 5 A 0 0 0 0 0 0 2 5 0 0 3 7 0 0 30 47 5 0 0 0 284 0 0 1.433 47 0.33
6 6 A 0 0 0 0 0 0 0 43 1 0 2 5 0 0 1 0 9 33 5 1 284 0 0 1.487 49 0.39
7 7 A 54 0 45 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 286 0 0 0.747 24 0.83
8 8 A 17 6 8 18 0 0 0 0 0 1 0 39 0 0 6 0 5 0 0 0 287 0 0 1.722 57 0.18
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 98 0 0 0 287 0 0 0.111 3 0.96
10 10 A 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 0 9 0 0 287 0 0 0.372 12 0.83
11 11 A 0 0 1 0 0 0 0 0 7 60 3 1 0 0 0 25 2 0 0 0 287 0 0 1.173 39 0.38
12 12 A 1 0 0 0 0 0 0 0 3 0 6 7 0 1 0 0 0 17 54 11 287 0 0 1.479 49 0.43
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 98 0 0 287 0 0 0.111 3 0.96
14 14 A 0 0 0 0 0 0 0 0 0 23 68 9 0 0 0 0 0 0 0 0 287 0 0 0.843 28 0.56
15 15 A 0 1 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 287 0 0 0.042 1 0.98
16 16 A 0 0 0 0 0 0 0 1 23 1 65 10 0 0 0 0 0 0 0 0 287 0 0 0.977 32 0.48
17 17 A 23 0 0 0 0 0 0 0 69 0 3 1 0 0 0 1 2 0 0 0 287 0 0 0.950 31 0.49
18 18 A 0 0 0 0 93 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 287 0 0 0.290 9 0.98
19 19 A 0 92 0 5 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 287 0 0 0.354 11 0.91
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 99 0 0 287 0 0 0.042 1 0.99
21 21 A 0 0 0 0 0 2 0 0 0 0 0 0 0 0 98 0 0 0 0 0 287 0 0 0.134 4 0.98
22 22 A 0 94 5 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 287 0 0 0.249 8 0.93
23 23 A 0 9 0 29 0 0 6 0 0 0 1 0 2 0 0 47 0 5 0 0 287 0 0 1.423 47 0.16
24 24 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 5 89 0 0 287 0 0 0.443 14 0.81
25 25 A 0 0 0 0 0 0 0 7 91 0 0 2 0 0 0 0 0 0 0 0 287 0 0 0.353 11 0.88
26 26 A 0 0 0 0 34 0 66 0 0 0 0 0 0 0 0 0 0 0 0 0 287 0 0 0.661 22 0.95
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 97 1 0 0 0 0 285 0 0 0.185 6 0.93
28 28 A 0 2 1 15 0 0 0 0 0 0 0 11 0 0 62 5 4 0 0 0 285 0 0 1.246 41 0.32
29 29 A 0 0 0 0 17 5 78 0 0 0 0 0 0 0 0 0 0 0 0 0 285 0 0 0.653 21 0.94
30 30 A 0 0 0 0 0 0 0 0 0 0 9 91 0 0 0 0 0 0 0 0 285 0 0 0.313 10 0.79
31 31 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 282 0 0 0.024 0 0.99
32 32 A 0 0 0 0 37 0 63 0 0 0 0 0 0 0 0 0 0 0 0 0 237 0 0 0.657 21 0.96
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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