Complet list of 1bha hssp file
Complete list of 1bha.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BHA
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-26
HEADER PHOTORECEPTOR 11-OCT-93 1BHA
COMPND MOL_ID: 1; MOLECULE: BACTERIORHODOPSIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; ORGANISM_TAXI
AUTHOR K.V.PERVUSHIN,V.Y.OREKHOV,A.I.POPOV,L.Y.MUSINA,A.S.ARSENIEV
DBREF 1BHA A 1 71 UNP P02945 BACR_HALN1 14 84
SEQLENGTH 66
NCHAIN 1 chain(s) in 1BHA data set
NALIGN 52
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B0R5N9_HALS31S8J 0.93 0.96 1 67 15 82 68 1 2 262 B0R5N9 Bacteriorhodopsin OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=bop PE=1 SV=1
2 : BACR_HALSA 2ZZL 0.93 0.96 1 67 15 82 68 1 2 262 P02945 Bacteriorhodopsin OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=bop PE=1 SV=2
3 : M1Y5I7_NATM8 0.58 0.78 5 67 16 79 64 1 2 258 M1Y5I7 Bacteriorhodopsin OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) GN=bop PE=4 SV=1
4 : V4ZQH6_9ARCH 0.58 0.78 5 67 18 81 64 1 2 260 V4ZQH6 Bacteriorhodopsin OS=uncultured archaeon A07HR67 GN=A07HR67_00265 PE=4 SV=1
5 : I1X958_9ARCH 0.57 0.81 1 67 13 80 68 1 2 259 I1X958 Bacteriorhodopsin OS=uncultured archaeon PE=4 SV=1
6 : BACR3_HALSD 0.56 0.78 5 67 16 79 64 1 2 258 P96787 Archaerhodopsin-3 OS=Halorubrum sodomense GN=aop3 PE=3 SV=1
7 : U1P9B5_9EURY 0.56 0.69 10 67 11 69 59 1 2 76 U1P9B5 Bacteriorhodopsin OS=Haloquadratum walsbyi J07HQW1 GN=J07HQW1_00156 PE=4 SV=1
8 : A7U0Y6_9EURY 0.55 0.78 5 67 16 79 64 1 2 258 A7U0Y6 Bacteriorhodopsin OS=Halorubrum sp. TP009 GN=TP009.20 PE=4 SV=1
9 : BACR1_HALC1 1UAZ 0.55 0.78 5 67 18 81 64 1 2 260 P69051 Archaerhodopsin-1 OS=Halorubrum chaoviator (strain DSM 11365 / JCM 9573 / AUS-1) PE=1 SV=1
10 : BACR1_HALSS 0.55 0.78 5 67 18 81 64 1 2 260 P69052 Archaerhodopsin-1 OS=Halobacterium sp. (strain SG1) GN=bop PE=1 SV=1
11 : Q6R5N7_9EURY 0.55 0.78 5 67 16 79 64 1 2 258 Q6R5N7 Archaerhodopsin BD1 OS=Halorubrum xinjiangense GN=aopbd1 PE=4 SV=1
12 : V6DX96_9EURY 0.55 0.78 5 67 16 79 64 1 2 258 V6DX96 Archaerhodopsin BD1 OS=Halorubrum sp. AJ67 GN=aopbd1 PE=4 SV=1
13 : BACR_HALAR 0.54 0.68 10 67 9 67 59 1 2 250 Q57101 Cruxrhodopsin-1 OS=Haloarcula argentinensis GN=cop1 PE=1 SV=1
14 : BACR_HALHP 0.54 0.68 10 67 1 59 59 1 2 211 P33971 Bacteriorhodopsin (Fragment) OS=Halobacterium halobium (strain port) GN=bop PE=3 SV=1
15 : BACR_HALVA 4JR8 0.54 0.67 8 67 7 67 61 1 2 250 P94854 Cruxrhodopsin-3 OS=Haloarcula vallismortis GN=cop3 PE=3 SV=1
16 : Q9YGB7_HALJP 0.54 0.68 10 67 9 67 59 1 2 250 Q9YGB7 Cruxrhodopsin (Precursor) OS=Haloarcula japonica GN=cop PE=4 SV=1
17 : Q5UXY6_HALMA 0.53 0.64 10 67 9 67 59 1 2 250 Q5UXY6 Bacteriorhodopsin OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=bop PE=4 SV=1
18 : V4Y792_9ARCH 0.53 0.74 3 67 14 79 66 1 2 256 V4Y792 Bacteriorhodopsin OS=uncultured archaeon A07HB70 GN=A07HB70_00886 PE=4 SV=1
19 : V5TJJ0_HALHI 0.53 0.66 10 67 9 67 59 1 2 250 V5TJJ0 Rhodopsin OS=Haloarcula hispanica N601 GN=HISP_02215 PE=4 SV=1
20 : A7U0U1_9EURY 0.51 0.66 1 67 11 78 68 1 2 256 A7U0U1 Bacteriorhodopsin OS=uncultured haloarchaeon FLAS10H9 GN=FLAS10H9.13 PE=4 SV=1
21 : BACR_HALHS 0.51 0.63 12 67 1 57 57 1 2 209 P33972 Bacteriorhodopsin (Fragment) OS=Halobacterium halobium (strain shark) GN=bop PE=3 SV=1
22 : G0LFX8_HALWC 0.51 0.65 1 67 9 76 68 1 2 254 G0LFX8 Bacteriorhodopsin I OS=Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) GN=bop1 PE=4 SV=1
23 : Q18DH8_HALWD 0.51 0.65 1 67 9 76 68 1 2 254 Q18DH8 Bacteriorhodopsin I OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=bop1 PE=4 SV=1
24 : BACR2_HALS2 2Z55 0.50 0.77 5 67 16 79 64 1 2 259 P29563 Archaerhodopsin-2 OS=Halobacterium sp. (strain aus-2) PE=1 SV=1
25 : BACR_HALHM 0.50 0.73 13 67 1 56 56 1 2 204 P33969 Bacteriorhodopsin (Fragment) OS=Halobacterium halobium (strain mex) GN=bop PE=3 SV=1
26 : Q9HH34_HALSI 0.50 0.77 5 67 18 81 64 1 2 255 Q9HH34 Rhodopsin OS=Halobacterium salinarum PE=4 SV=1
27 : U1NGJ1_9EURY 0.50 0.65 1 67 55 122 68 1 2 300 U1NGJ1 Bacteriorhodopsin OS=Haloquadratum walsbyi J07HQW2 GN=J07HQW2_02399 PE=4 SV=1
28 : C7NQP3_HALUD 0.49 0.66 12 63 9 61 53 1 2 251 C7NQP3 Rhodopsin OS=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) GN=Huta_0315 PE=4 SV=1
29 : U2DQ06_9EURY 0.49 0.66 12 63 9 61 53 1 2 251 U2DQ06 Bacteriorhodopsin protein OS=Halorhabdus tiamatea SARL4B GN=bop PE=4 SV=1
30 : BACR_HALSR 0.48 0.67 8 67 14 74 61 1 2 255 Q53496 Cruxrhodopsin-2 OS=Haloarcula sp. (strain arg-2 / Andes heights) GN=cop2 PE=1 SV=1
31 : C7P2T2_HALMD 0.48 0.67 8 67 14 74 61 1 2 255 C7P2T2 Rhodopsin OS=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) GN=Hmuk_1283 PE=4 SV=1
32 : M0IDG5_9EURY 0.48 0.67 8 67 7 67 61 1 2 243 M0IDG5 Bacteriorhodopsin OS=Haloferax mucosum ATCC BAA-1512 GN=C440_10768 PE=4 SV=1
33 : Q66SB7_9EURY 0.48 0.69 7 67 6 67 62 1 2 240 Q66SB7 Bacteriorhodopsin OS=Halobiforma lacisalsi PE=4 SV=1
34 : U1Q843_9EURY 0.48 0.66 8 67 7 67 61 1 2 245 U1Q843 Bacteriorhodopsin OS=Halonotius sp. J07HN6 GN=J07HN6_00762 PE=4 SV=1
35 : I4DST7_9EURY4FBZ 0.47 0.68 7 67 7 68 62 1 2 241 I4DST7 Deltarhodopsin (Fragment) OS=Haloterrigena thermotolerans GN=dop PE=1 SV=1
36 : L0JG40_NATP1 0.47 0.68 7 67 7 68 62 1 2 241 L0JG40 Bacteriorhodopsin (Precursor) OS=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) GN=Natpe_0342 PE=4 SV=1
37 : M0JSR0_HALVA 0.47 0.66 1 67 7 74 68 1 2 250 M0JSR0 Bacteriorhodopsin OS=Haloarcula vallismortis ATCC 29715 GN=C437_00860 PE=4 SV=1
38 : M0K6W9_9EURY 0.47 0.66 1 67 7 74 68 1 2 250 M0K6W9 Bacteriorhodopsin OS=Haloarcula sinaiiensis ATCC 33800 GN=C436_03541 PE=4 SV=1
39 : Q5V0R5_HALMA 0.47 0.66 1 67 7 74 68 1 2 250 Q5V0R5 Bacteriorhodopsin OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=xop1 PE=4 SV=1
40 : U1NH01_9EURY 0.47 0.68 10 67 9 67 59 1 2 249 U1NH01 Bacteriorhodopsin OS=Halonotius sp. J07HN6 GN=J07HN6_00759 PE=4 SV=1
41 : U1R2U7_9EURY 0.47 0.66 8 65 10 68 59 1 2 246 U1R2U7 Bacteriorhodopsin OS=halophilic archaeon J07HB67 GN=J07HB67_01728 PE=4 SV=1
42 : G0LFY1_HALWC 0.46 0.64 8 67 7 67 61 1 2 246 G0LFY1 Bacteriorhodopsin II OS=Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) GN=bop2 PE=4 SV=1
43 : L9WGU1_9EURY 0.46 0.66 8 67 8 68 61 1 2 241 L9WGU1 Bacteriorhodopsin OS=Natronorubrum bangense JCM 10635 GN=C494_10520 PE=4 SV=1
44 : Q18DH5_HALWD 0.46 0.64 8 67 7 67 61 1 2 246 Q18DH5 Bacteriorhodopsin II OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=bop2 PE=4 SV=1
45 : U1P9B9_9EURY 0.46 0.66 8 67 7 67 61 1 2 246 U1P9B9 Bacteriorhodopsin OS=Haloquadratum walsbyi J07HQW1 GN=J07HQW1_00161 PE=4 SV=1
46 : U1Q194_9EURY 0.46 0.66 1 67 35 102 68 1 2 278 U1Q194 Bacteriorhodopsin OS=Haloquadratum sp. J07HQX50 GN=J07HQX50_01232 PE=4 SV=1
47 : U1QNI9_9EURY 0.46 0.69 8 67 9 69 61 1 2 247 U1QNI9 Bacteriorhodopsin OS=Halonotius sp. J07HN4 GN=J07HN4v3_02804 PE=4 SV=1
48 : BACR_HALS4 0.45 0.66 7 67 16 77 62 1 2 250 O93740 Bacteriorhodopsin OS=Haloterrigena sp. (strain arg-4) GN=bop PE=3 SV=1
49 : H6X118_9EURY 0.45 0.66 7 67 16 77 62 1 2 250 H6X118 Bacteriorhodopsin OS=Natrinema altunense GN=bop PE=4 SV=1
50 : M0CK77_9EURY 0.44 0.67 8 67 8 68 61 1 2 241 M0CK77 Bacteriorhodopsin OS=Haloterrigena limicola JCM 13563 GN=C476_05512 PE=4 SV=1
51 : U1PU98_9EURY 0.43 0.62 8 67 7 67 61 1 2 246 U1PU98 Bacteriorhodopsin OS=Haloquadratum walsbyi J07HQW2 GN=J07HQW2_02402 PE=4 SV=1
52 : U1Q537_9EURY 0.39 0.68 11 67 10 66 57 1 1 242 U1Q537 Bacteriorhodopsin OS=Haloquadratum sp. J07HQX50 GN=J07HQX50_01236 PE=4 SV=1
## ALIGNMENTS 1 - 52
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 A A 0 0 105 12 54 AA A A SS S SSS S
2 3 A Q + 0 0 164 12 68 QQ S S SS S SSS S
3 4 A I + 0 0 61 13 34 II I I L LL L LLL L
4 5 A T + 0 0 107 13 51 TT T G G GG G GGG G
5 6 A G S S+ 0 0 62 23 64 GGGGSG GGGGG E V VVG GV VVV V
6 7 A R > - 0 0 157 23 65 RRRRER RRRRR R E EER RE EEE E
7 8 A P H > S+ 0 0 104 28 40 PPPPPP PPPPP P G GGP PG P PPGGG G PP
8 9 A E H > S+ 0 0 158 41 3 EEEEEE EEEEE E E E EEE EE EEEEEEEEEE QEEEEEEEEEE
9 10 A W H > S+ 0 0 61 41 77 WWTTWT TTTTT A A G GGT TG SSSSQSSGGG SASAAGGSSSA
10 11 A I H X S+ 0 0 55 48 36 IIIMILILLLLLIIIIIVII IIL LI IIILIIIIIIILTLTTILIILT
11 12 A W H X S+ 0 0 185 49 5 WWWWWWWWWWWWWWWWWWWW WWW WW FFWWWWWWWWWSWWWWWFWWWWW
12 13 A L H X S+ 0 0 32 52 0 LLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLL
13 14 A A H X S+ 0 0 28 53 100 AAGGAGAGGGGGWWWWWAWAWAAGGGAWWWWWWWWWAAAWWWWWWAWWWWWW
14 15 A L H X S+ 0 0 89 53 34 LLIIIILIIIIILLLLLLLLLLLIIILAAVVVVIIILLLIIIIIILIIIIVF
15 16 A G H X S+ 0 0 24 53 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
16 17 A T H X S+ 0 0 2 53 11 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTFF
17 18 A A H X S+ 0 0 59 53 61 AALLALILLLLIAAAAAIAIAIILLLIAAAALIIIIVVVIAIIIIIAIIIII
18 19 A L H X S+ 0 0 117 53 69 LLLLILGLLLLLGGGGGIGLGGGLLLGGGGGGGGGGGGGGGGGGGGGGGGGG
19 20 A M H X S+ 0 0 64 53 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
20 21 A G H X S+ 0 0 20 53 71 GGLLGLLLLLLLFFFFFLFLFLLLLILFFFFTTATTLLLAGVTVILATTTLT
21 22 A L H X S+ 0 0 92 53 17 LLLILILIIIIILLLLLLLLLLLIIILLLLLVLLLLLLLLLLLLLLLLLLLL
22 23 A G H X S+ 0 0 33 53 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA
23 24 A T H X S+ 0 0 4 53 60 TTTTATMTTTTTMMMMMTMMMMMTTTMMMMMTTLTTMMMLATTTTMLTTTTT
24 25 A L H X S+ 0 0 95 53 33 LLFFLFLFFFFFLLLLLVLGLLLFFFLLLLLLLLLLVVVLLVLVVFLLLLVG
25 26 A Y H X S+ 0 0 123 53 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
26 27 A F H X S+ 0 0 49 53 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
27 28 A L H X S+ 0 0 61 53 44 LLILWLIIIIILIIIIIIIMIIIIIIMIIIIVLLVIMMMLLAIAGILVIIAL
28 29 A V H X S+ 0 0 80 53 64 VVVVTVAVVVVVAAAGAGAQAAAAAAAAAAAGGGGGAAAGWVGVVAGGGGVI
29 30 A K H X S+ 0 0 136 53 50 KKRKQRDKKKKKRRRRRKRQRDDRRQDTTRRRRRRRKKKRHRRRRDRRRRQQ
30 31 A G H < S+ 0 0 17 53 3 gggggggggggggggggggggggggggggggggggggggggggggggggggs
31 32 A M H < S+ 0 0 147 53 50 vvvvvvvvvvvveeeeevevevvvvvvvvvvvvvvvvvvvasvssvvvvvsk
32 33 A G H < 0 0 56 53 74 SSTTETQTTTTTTTTTTSTTTQQTTTQRRSSRRKRRQQQKRTRTATKRRRTA
33 34 A V < 0 0 151 53 10 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDR
34 ! ! 0 0 0 0 0
35 37 A P > 0 0 138 53 68 PPRKEKPKKKKKSSSSGPSPGPPKKKPSSQQPPKRRPPPKPPPPPPTRRPPT
36 38 A D H > + 0 0 96 53 62 DDEEEDREEEEERRRRRDRRRRREKERRRRREKKKKEEEKDEKEEQKKKKEN
37 39 A A H > S+ 0 0 69 53 84 AAAATAQAAAAARRRRRQRQRQQAAAQRRRRMMLMMQQQLEQMQQMLMMMQQ
38 40 A K H > S+ 0 0 154 53 52 KKRRRRKRRRRRQQQQQQQKQKKRRRKKKQQQQKQQEEEKQQQQQNKQQQQQ
39 41 A K H X S+ 0 0 122 53 56 KKEEMEEEEEEEKKKKKEKEKEEEEEEKKKKKQQEEEEEQETETSEQEEETK
40 42 A F H X S+ 0 0 142 53 5 FFYYFYFYYYYYFFFFFFFFFFFYYYFFFFFFFFFFFFFFYYFYYFFFFFYL
41 43 A Y H X S+ 0 0 116 53 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYF
42 44 A A H X S+ 0 0 47 53 58 AAAAVAVSSSSSIIIIIIIIIVVAAAVVVIIIIAIIVVVAVIIIIVAIIIIV
43 45 A I H < S+ 0 0 96 53 37 IIIIVVIIIIIIAAAAAIAIAIIIIIIVVAAAIIIIIIIIIIIIIIIIIIIV
44 46 A T H < S+ 0 0 58 53 10 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTNTTTTT
45 47 A T H < S+ 0 0 5 53 36 TTIITIIIIIIIIIIIIIIIIIIIIIITTIIIIITTIIIIITITTIIIIITT
46 48 A L S X S+ 0 0 70 53 13 LLLLLLLLLLLLLLLLLMLLLLLLLLLFFMMFFFFFLLLFFLFLLMFFFFIL
47 49 A V H > S+ 0 0 80 53 13 VVVVIVIVVVVIIIIIIIIIIIIVVVIIIIIIVVIIIIIVVIIIIIVIIIII
48 50 A P H > S+ 0 0 9 53 50 PPPPPPPPPPPPTTTTTTTPTPPPPPPAAAATTTTTAAATPPTPPPTTTTPP
49 51 A A H > S+ 0 0 23 53 45 AAGGSGGGGGGGAAAAAGAGAAAGGGGAAAATTATTGGGSAAAAAGTTTTAA
50 52 A I H X S+ 0 0 73 53 3 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIITIIIIIIIIIIIIIIIIII
51 53 A A H X S+ 0 0 14 53 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
52 54 A F H X S+ 0 0 77 53 83 FFTTFSASSSSSFFFFFTFAFAASSSAFFFFAAFAAAAAFAAAAAAFAAAAA
53 55 A T H X S+ 0 0 69 53 56 TTAAAAAAAAAAVVVVVSVAVAAAAAAVVVVAASAASSSSAAVAAASAAAAV
54 56 A M H X S+ 0 0 123 53 81 MMAASASAAAAANNNNNANSNSSAAASNNNNMMMMMSSSMSAMAASMMMMAS
55 57 A Y H X S+ 0 0 23 53 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
56 58 A L H X>S+ 0 0 45 53 8 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFFFLLLFFLFLLLFFFFLF
57 59 A S H <5S+ 0 0 13 53 50 SSSSSSSSSSSSAAAAASASASSASASAASSLAMAASSSLSAAAASAAAAAS
58 60 A M H <5S+ 0 0 92 53 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMML
59 61 A L H <5S+ 0 0 25 53 79 LLFFLFFFFFFFAAAAAFAFAFFFFFFAAAAAAAAAFFFAAAAAAFAAAAAV
60 62 A L T <5S- 0 0 111 53 66 LLFFLFFFFFFFLLLLLFLFLFFFFFFTTLLTTTTTFFFTTTTTTFTTTTTT
61 63 A G < + 0 0 11 53 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
62 64 A Y S S+ 0 0 111 53 30 YYTVFIFIIIIIFFFFFFFFFFFIIIFFFFFFFFFFFFFFFLFLWFFFFFLY
63 65 A G S S+ 0 0 24 53 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
64 66 A L S S+ 0 0 95 51 27 LLLLALLLLLLLLLLLLLLLLLLVLVL VVLVLVVLLLLVVVVVLVVVVVV
65 67 A T S S+ 0 0 116 51 33 TTTTSTTTTTTTTTTTTTTTTTTTTTT TTTTATTTTTAVITIITATTTII
66 68 A M 0 0 143 50 72 MMEEVEEEEEEEIIIIFEFQFEEETEE TTEEEEEEEEE SESSENEEESS
67 69 A V 0 0 137 50 19 VVVVVVVVVVVVVVVVIVIVIVVVVVV IIVVIVVVVVI MVMMVVVVVMM
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 2 A 0 0 0 0 0 0 0 0 42 0 58 0 0 0 0 0 0 0 0 0 12 0 0 0.679 22 0.46
2 3 A 0 0 0 0 0 0 0 0 0 0 75 0 0 0 0 0 25 0 0 0 12 0 0 0.562 18 0.32
3 4 A 0 62 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0.666 22 0.66
4 5 A 0 0 0 0 0 0 0 69 0 0 0 31 0 0 0 0 0 0 0 0 13 0 0 0.617 20 0.49
5 6 A 35 0 0 0 0 0 0 57 0 0 4 0 0 0 0 0 0 4 0 0 23 0 0 0.962 32 0.35
6 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 39 0 0 23 0 0 0.669 22 0.34
7 8 A 0 0 0 0 0 0 0 29 0 71 0 0 0 0 0 0 0 0 0 0 28 0 0 0.598 19 0.59
8 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 41 0 0 0.115 3 0.97
9 10 A 0 0 0 0 0 10 0 22 15 0 27 24 0 0 0 0 2 0 0 0 41 0 0 1.629 54 0.22
10 11 A 2 27 60 2 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 48 0 0 1.027 34 0.63
11 12 A 0 0 0 0 6 92 0 0 0 0 2 0 0 0 0 0 0 0 0 0 49 0 0 0.329 10 0.94
12 13 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0.000 0 1.00
13 14 A 0 0 0 0 0 53 0 21 26 0 0 0 0 0 0 0 0 0 0 0 53 0 0 1.015 33 -0.01
14 15 A 9 38 47 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 53 0 0 1.143 38 0.65
15 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
16 17 A 0 0 0 0 4 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 53 0 0 0.161 5 0.88
17 18 A 6 21 42 0 0 0 0 0 32 0 0 0 0 0 0 0 0 0 0 0 53 0 0 1.219 40 0.38
18 19 A 0 28 4 0 0 0 0 68 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.744 24 0.31
19 20 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
20 21 A 4 40 4 0 21 0 0 9 6 0 0 17 0 0 0 0 0 0 0 0 53 0 0 1.627 54 0.28
21 22 A 2 79 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.574 19 0.82
22 23 A 0 0 0 0 0 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.094 3 0.97
23 24 A 0 6 0 38 0 0 0 0 4 0 0 53 0 0 0 0 0 0 0 0 53 0 0 0.991 33 0.39
24 25 A 15 58 0 0 23 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 1.059 35 0.67
25 26 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
26 27 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
27 28 A 6 23 53 9 0 2 0 2 6 0 0 0 0 0 0 0 0 0 0 0 53 0 0 1.371 45 0.56
28 29 A 28 0 2 0 0 2 0 25 40 0 0 2 0 0 0 0 2 0 0 0 53 0 0 1.368 45 0.36
29 30 A 0 0 0 0 0 0 0 0 0 0 0 4 0 2 51 25 9 0 0 9 53 0 0 1.332 44 0.50
30 31 A 0 0 0 0 0 0 0 98 0 0 2 0 0 0 0 0 0 0 0 0 53 0 52 0.094 3 0.97
31 32 A 74 0 0 2 0 0 0 0 2 0 8 0 0 0 0 2 0 13 0 0 53 0 0 0.913 30 0.49
32 33 A 0 0 0 0 0 0 0 2 4 0 9 43 0 0 21 6 13 2 0 0 53 0 0 1.615 53 0.25
33 34 A 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 96 53 0 0 0.187 6 0.90
34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.000 0 1.00
35 37 A 0 0 0 0 0 0 0 4 0 42 13 4 0 0 9 23 4 2 0 0 53 0 0 1.637 54 0.32
36 38 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30 21 2 34 2 11 53 0 0 1.451 48 0.37
37 39 A 0 6 0 17 0 0 0 0 26 0 0 2 0 0 21 0 26 2 0 0 53 0 0 1.643 54 0.16
38 40 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 25 45 6 2 0 53 0 0 1.277 42 0.48
39 41 A 0 0 0 2 0 0 0 0 0 0 2 6 0 0 0 30 8 53 0 0 53 0 0 1.206 40 0.43
40 42 A 0 2 0 0 68 0 30 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.699 23 0.95
41 43 A 0 0 0 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.094 3 1.00
42 44 A 25 0 43 0 0 0 0 0 23 0 9 0 0 0 0 0 0 0 0 0 53 0 0 1.266 42 0.41
43 45 A 9 0 72 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.776 25 0.63
44 46 A 0 0 0 0 0 0 0 0 0 0 0 94 0 0 0 0 0 0 6 0 53 0 0 0.218 7 0.89
45 47 A 0 0 75 0 0 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 53 0 0 0.557 18 0.64
46 48 A 0 64 2 8 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.906 30 0.86
47 49 A 34 0 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.641 21 0.86
48 50 A 0 0 0 0 0 0 0 0 13 51 0 36 0 0 0 0 0 0 0 0 53 0 0 0.979 32 0.49
49 51 A 0 0 0 0 0 0 0 36 45 0 4 15 0 0 0 0 0 0 0 0 53 0 0 1.136 37 0.55
50 52 A 0 0 98 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 53 0 0 0.094 3 0.96
51 53 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
52 54 A 0 0 0 0 34 0 0 0 43 0 17 6 0 0 0 0 0 0 0 0 53 0 0 1.193 39 0.16
53 55 A 25 0 0 0 0 0 0 0 57 0 13 6 0 0 0 0 0 0 0 0 53 0 0 1.097 36 0.43
54 56 A 0 0 0 26 0 0 0 0 30 0 23 0 0 0 0 0 0 0 21 0 53 0 0 1.376 45 0.18
55 57 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
56 58 A 0 77 0 0 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.535 17 0.92
57 59 A 0 4 0 2 0 0 0 0 43 0 51 0 0 0 0 0 0 0 0 0 53 0 0 0.904 30 0.50
58 60 A 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.094 3 0.99
59 61 A 2 8 0 0 40 0 0 0 51 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.980 32 0.21
60 62 A 0 25 0 0 40 0 0 0 0 0 0 36 0 0 0 0 0 0 0 0 53 0 0 1.079 36 0.34
61 63 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
62 64 A 2 6 17 0 64 2 8 0 0 0 0 2 0 0 0 0 0 0 0 0 53 0 0 1.168 38 0.70
63 65 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.000 0 1.00
64 66 A 35 63 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 51 0 0 0.737 24 0.72
65 67 A 2 0 10 0 0 0 0 0 6 0 2 80 0 0 0 0 0 0 0 0 51 0 0 0.724 24 0.66
66 68 A 2 0 8 6 6 0 0 0 0 0 10 6 0 0 0 0 2 58 2 0 50 0 0 1.489 49 0.28
67 69 A 76 0 14 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.714 23 0.80
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
1 31 45 2 gMGv
2 31 45 2 gMGv
3 27 42 2 gWGv
4 27 44 2 gWGv
5 31 43 2 gFGv
6 27 42 2 gWGv
7 22 32 2 gWDv
8 27 42 2 gWGv
9 27 44 2 gWGv
10 27 44 2 gWGv
11 27 42 2 gWGv
12 27 42 2 gWGv
13 22 30 2 gWGe
14 22 22 2 gWGe
15 24 30 2 gWGe
16 22 30 2 gWGe
17 22 30 2 gWGe
18 29 42 2 gWGv
19 22 30 2 gWGe
20 31 41 2 gWGv
21 20 20 2 gWGe
22 31 39 2 gLDv
23 31 39 2 gLDv
24 27 42 2 gWGv
25 19 19 2 gWGv
26 27 44 2 gWGv
27 31 85 2 gWDv
28 20 28 2 gWNv
29 20 28 2 gWNv
30 24 37 2 gWSv
31 24 37 2 gWSv
32 24 30 2 gRGv
33 25 30 2 gRGv
34 24 30 2 gWGv
35 25 31 2 gRGv
36 25 31 2 gRGv
37 31 37 2 gWDv
38 31 37 2 gWDv
39 31 37 2 gWDv
40 22 30 2 gWGv
41 24 33 2 gWSa
42 24 30 2 gRGs
43 24 31 2 gRGv
44 24 30 2 gRGs
45 24 30 2 gRGs
46 31 65 2 gLDv
47 24 32 2 gWGv
48 25 40 2 gRGv
49 25 40 2 gRGv
50 24 31 2 gRGv
51 24 30 2 gRGs
52 21 30 1 sRk
//