Complet list of 1bh1 hssp file
Complete list of 1bh1.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BH1
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER TOXIN 11-JUN-98 1BH1
COMPND MOL_ID: 1; MOLECULE: MELITTIN; CHAIN: A; ENGINEERED: YES; MUTATION: YE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: APIS MELLIFERA; ORGANISM_COMMON: HONEY
AUTHOR K.J.BARNHAM,D.HEWISH,J.WERKMEISTER,C.CURTAIN,A.KIRKPATRICK, N.BARTONE,
DBREF 1BH1 A 1 26 UNP P01501 MEL_APIME 44 69
SEQLENGTH 26
NCHAIN 1 chain(s) in 1BH1 data set
NALIGN 12
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : I1VC84_APIME 1.00 1.00 1 26 44 69 26 0 0 70 I1VC84 Melittin OS=Apis mellifera PE=4 SV=1
2 : I3RJI9_APICA 1.00 1.00 1 26 44 69 26 0 0 70 I3RJI9 Melittin OS=Apis mellifera carnica PE=4 SV=1
3 : MEL_APICE 1.00 1.00 1 26 51 76 26 0 0 77 Q8LW54 Melittin OS=Apis cerana GN=MELT PE=1 SV=1
4 : MEL_APIME 3QRX 1.00 1.00 1 26 44 69 26 0 0 70 P01501 Melittin OS=Apis mellifera GN=MELT PE=1 SV=1
5 : MEL_VESMC 1.00 1.00 1 26 44 69 26 0 0 70 P59262 Melittin OS=Vespula maculifrons GN=MELT PE=2 SV=1
6 : MEL_VESMG 1.00 1.00 1 26 44 69 26 0 0 70 P68408 Melittin OS=Vespa magnifica GN=MELT PE=2 SV=1
7 : MEL_VESVN 1.00 1.00 1 26 44 69 26 0 0 70 P68409 Melittin OS=Vespa velutina nigrithorax GN=MELT PE=2 SV=1
8 : Q95Z19_POLSY 1.00 1.00 1 26 41 66 26 0 0 67 Q95Z19 Melittin OS=Polistes sp. GN=melt PE=4 SV=1
9 : MEL_APICC 0.96 1.00 1 26 44 69 26 0 0 70 P68407 Melittin OS=Apis cerana cerana GN=MELT PE=2 SV=2
10 : MEL_POLHE 0.96 1.00 1 26 44 69 26 0 0 70 P59261 Melittin OS=Polistes hebraeus GN=MELT PE=2 SV=1
11 : MEL_APIDO 0.88 1.00 1 26 1 26 26 0 0 26 P01502 Melittin OS=Apis dorsata GN=MELT PE=1 SV=1
12 : MEL_APIFL 0.81 0.96 1 26 1 26 26 0 0 26 P01504 Melittin OS=Apis florea GN=MELT PE=1 SV=1
## ALIGNMENTS 1 - 12
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 119 13 0 GGGGGGGGGGGG
2 2 A I > + 0 0 105 13 0 IIIIIIIIIIII
3 3 A G T 4 S+ 0 0 66 13 0 GGGGGGGGGGGG
4 4 A A T >> S+ 0 0 58 13 0 AAAAAAAAAAAA
5 5 A V H 3> S+ 0 0 78 13 20 VVVVVVVVVVII
6 6 A L H 3< S+ 0 0 97 13 0 LLLLLLLLLLLL
7 7 A K H <4 S+ 0 0 132 13 0 KKKKKKKKKKKK
8 8 A V H < S+ 0 0 40 13 0 VVVVVVVVVVVV
9 9 A L S < S+ 0 0 133 13 0 LLLLLLLLLLLL
10 10 A T S S+ 0 0 103 13 66 TTTTTTTTTASA
11 11 A T S S- 0 0 107 13 0 TTTTTTTTTTTT
12 12 A G S S- 0 0 32 13 0 GGGGGGGGGGGG
13 13 A L > - 0 0 94 13 0 LLLLLLLLLLLL
14 14 A P T 3 S+ 0 0 66 13 0 PPPPPPPPPPPP
15 15 A A T >> S+ 0 0 66 13 38 AAAAAAAAAAAT
16 16 A L H X>>S+ 0 0 62 13 0 LLLLLLLLLLLL
17 17 A I H 345S+ 0 0 82 13 0 IIIIIIIIIIII
18 18 A S H <45S+ 0 0 67 13 11 SSSSSSSSGSSS
19 19 A W H