Complet list of 1bgk hssp file
Complete list of 1bgk.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BGK
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER POTASSIUM CHANNEL INHIBITOR 08-MAY-96 1BGK
COMPND MOL_ID: 1; MOLECULE: BGK; CHAIN: A; SYNONYM: POTASSIUM CHANNEL TOXIN B
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: BUNODOSOMA GRANULIFERA; ORGANISM_TAXID
AUTHOR M.DAUPLAIS,A.LECOQ,J.SONG,J.COTTON,N.JAMIN,B.GILQUIN, C.ROUMESTAND,C.V
DBREF 1BGK A 1 37 UNP P29186 TXBGK_BUNGR 1 37
SEQLENGTH 37
NCHAIN 1 chain(s) in 1BGK data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXT1B_BUNGR 1BGK 1.00 1.00 1 37 1 37 37 0 0 37 P29186 Kappa-actitoxin-Bg1a OS=Bunodosoma granulifera PE=1 SV=2
2 : TXT1D_BUNCI 0.64 0.81 2 37 2 37 36 0 0 37 C0HJC3 Potassium channel toxin BcsTx2 OS=Bunodosoma caissarum PE=1 SV=1
3 : TXT1C_BUNCI 0.58 0.72 2 37 2 37 36 0 0 38 C0HJC2 Potassium channel toxin BcsTx1 OS=Bunodosoma caissarum PE=1 SV=1
4 : TXT1B_ACTEQ 0.53 0.67 2 37 2 36 36 1 1 36 P81897 Potassium channel toxin kappa-actitoxin-Aeq1a OS=Actinia equina PE=1 SV=1
5 : TXT1B_ANESU 0.47 0.64 2 37 2 36 36 1 1 36 Q9TWG1 Potassium channel toxin kappa-actitoxin-As1a OS=Anemonia sulcata PE=1 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A V 0 0 178 2 0 V
2 2 A a + 0 0 59 6 0 CCCCC
3 3 A R - 0 0 114 6 62 RKIKK
4 4 A D - 0 0 12 6 0 DDDDD
5 5 A W + 0 0 149 6 94 WGRNN
6 6 A F S S- 0 0 79 6 0 FFFFF
7 7 A K >> - 0 0 145 6 81 KPPSA
8 8 A E H 3> S+ 0 0 102 6 73 ETTAA
9 9 A T H 3> S+ 0 0 66 6 68 TAGNA
10 10 A A H <> S+ 0 0 29 6 46 ATTTT
11 11 A b H X S+ 0 0 0 6 0 CCCCC
12 12 A R H X S+ 0 0 155 6 46 RQKKK
13 13 A H H X S+ 0 0 114 6 0 HHHHH
14 14 A A H X S+ 0 0 0 6 60 AAVVV
15 15 A K H < S+ 0 0 112 6 0 KKKKK
16 16 A S H < S+ 0 0 101 6 95 SLKAE
17 17 A L H < S- 0 0 64 6 102 LVGNN
18 18 A G S >< S+ 0 0 40 6 60 GGGNK
19 19 A N T 3> + 0 0 31 6 27 NNSNN
20 20 A c T 34 S- 0 0 18 6 0 CCCCC
21 21 A R T <4 S+ 0 0 157 5 77 RKK.G
22 22 A T T 4 S+ 0 0 109 6 75 TNNGS
23 23 A S S X S- 0 0 37 6 39 SSSSQ
24 24 A Q H >>>S+ 0 0 159 5 0 QQQQ.
25 25 A K I 34>S+ 0 0 115 6 0 KKKKK
26 26 A Y I 345S+ 0 0 73 6 0 YYYYY
27 27 A R I <<5S+ 0 0 90 6 76 RRRAA
28 28 A A I ><5S+ 0 0 55 6 68 AAITT
29 29 A N I 3 >> + 0 0 2 6 0 AAAAA
32 32 A K H 345S+ 0 0 76 6 0 KKKKK
33 33 A T H <45S+ 0 0 10 6 0 TTTTT
34 34 A c H <5S- 0 0 33 6 0 CCCCC
35 35 A E T <5S+ 0 0 166 6 42 EGGGG
36 36 A L < 0 0 44 6 94 LPLKK
37 37 A a 0 0 100 6 0 CCCCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 17 0 0 0 0 0 0 0 0 0 0 0 33 50 0 0 0 0 6 0 0 1.011 33 0.37
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 33 0 17 0 0 0 0 0 0 17 0 0 0 33 0 6 0 0 1.330 44 0.05
6 6 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 17 33 17 0 0 0 0 33 0 0 0 0 6 0 0 1.330 44 0.19
8 8 A 0 0 0 0 0 0 0 0 33 0 0 33 0 0 0 0 0 33 0 0 6 0 0 1.099 36 0.27
9 9 A 0 0 0 0 0 0 0 17 33 0 0 33 0 0 0 0 0 0 17 0 6 0 0 1.330 44 0.31
10 10 A 0 0 0 0 0 0 0 0 33 0 0 67 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.54
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 50 17 0 0 0 6 0 0 1.011 33 0.53
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 6 0 0 0.000 0 1.00
14 14 A 50 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.693 23 0.40
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
16 16 A 0 17 0 0 0 0 0 0 17 0 33 0 0 0 0 17 0 17 0 0 6 0 0 1.561 52 0.05
17 17 A 17 33 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 33 0 6 0 0 1.330 44 -0.03
18 18 A 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 17 0 0 17 0 6 0 0 0.868 28 0.40
19 19 A 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 83 0 6 0 0 0.451 15 0.72
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 1 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 20 0 0 0 0 0 0 40 40 0 0 0 0 5 0 0 1.055 35 0.23
22 22 A 0 0 0 0 0 0 0 17 0 0 17 33 0 0 0 0 0 0 33 0 6 0 0 1.330 44 0.25
23 23 A 0 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 17 0 0 0 6 1 0 0.451 15 0.61
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 5 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 33 0 0 0 0 0 67 0 0 0 0 0 6 0 0 0.637 21 0.24
28 28 A 0 0 17 0 0 0 0 0 50 0 0 33 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.31
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 33 0 0 6 0 0 0.637 21 0.58
36 36 A 0 50 0 0 0 0 0 0 0 17 0 0 0 0 0 33 0 0 0 0 6 0 0 1.011 33 0.06
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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