Complet list of 1bah hssp file
Complete list of 1bah.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1BAH
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-24
HEADER TOXIN 06-JUN-96 1BAH
COMPND MOL_ID: 1; MOLECULE: CHARYBDOTOXIN; CHAIN: A; SYNONYM: CHABII; ENGINEE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: LEIURUS QUINQUESTRIATUS; ORGANISM_COMM
AUTHOR J.SONG,B.GILQUIN,N.JAMIN,M.GUENNEUGUES,M.DAUPLAIS,C.VITA, A.MENEZ
DBREF 1BAH A 2 37 UNP P13487 SCKA_LEIQH 2 37
SEQLENGTH 37
NCHAIN 1 chain(s) in 1BAH data set
NALIGN 19
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : KAX11_LEIQH 4JTA 0.94 0.94 2 37 24 59 36 0 0 59 P13487 Potassium channel toxin alpha-KTx 1.1 OS=Leiurus quinquestriatus hebraeus PE=1 SV=4
2 : KAX1C_LEIQH 0.89 0.92 2 37 24 59 36 0 0 59 P59943 Potassium channel toxin alpha-KTx 1.12 OS=Leiurus quinquestriatus hebraeus PE=3 SV=1
3 : KAX1D_LEIQH 0.86 0.92 2 37 2 37 36 0 0 37 P59944 Potassium channel toxin alpha-KTx 1.13 OS=Leiurus quinquestriatus hebraeus PE=1 SV=1
4 : KAX12_LEIQH 1LIR 0.72 0.92 2 37 24 59 36 0 0 59 P45628 Potassium channel toxin alpha-KTx 1.2 OS=Leiurus quinquestriatus hebraeus PE=1 SV=2
5 : KAX16_MESMA 2BMT 0.64 0.81 2 37 23 58 36 0 0 58 Q9NII5 Potassium channel toxin alpha-KTx 1.6 OS=Mesobuthus martensii PE=1 SV=1
6 : KAX1X_MESMA 0.64 0.81 2 37 23 58 36 0 0 58 H2ER22 Potassium channel toxin alpha-KTx Kcug1a OS=Mesobuthus martensii PE=2 SV=1
7 : Q1EFP8_MESMA 0.64 0.81 2 37 23 58 36 0 0 58 Q1EFP8 Potassium channel toxin BmKTX2' OS=Mesobuthus martensii PE=3 SV=1
8 : KAX13_MESTA 0.63 0.71 2 36 2 36 35 0 0 37 P24663 Potassium channel toxin alpha-KTx 1.3 OS=Mesobuthus tamulus PE=1 SV=2
9 : KAX14_CENLM 0.57 0.69 2 36 2 36 35 0 0 37 P0C167 Potassium channel toxin alpha-KTx 1.4 OS=Centruroides limbatus PE=1 SV=1
10 : A0RZD1_MESMA 0.56 0.75 2 37 22 57 36 0 0 57 A0RZD1 Potassium-channel toxin protein OS=Mesobuthus martensii GN=TX1 PE=3 SV=1
11 : KAX15_MESMA 1BIG 0.56 0.75 2 37 22 57 36 0 0 57 Q9NII6 Potassium channel toxin alpha-KTx 1.5 OS=Mesobuthus martensii PE=1 SV=1
12 : KAX1F_MESMA 0.56 0.78 2 37 22 57 36 0 0 57 H2ER23 Potassium channel toxin alpha-KTx 1.15 OS=Mesobuthus martensii PE=2 SV=1
13 : V9LLY8_MESMA 0.56 0.78 2 37 22 57 36 0 0 57 V9LLY8 Toxin BmTX4 OS=Mesobuthus martensii PE=4 SV=1
14 : KAX19_CENLM 0.53 0.68 2 35 2 35 34 0 0 36 P59848 Potassium channel toxin alpha-KTx 1.9 (Fragment) OS=Centruroides limbatus PE=1 SV=1
15 : KAX1E_MESMA 0.53 0.72 2 37 24 59 36 0 0 59 H2ETQ6 Potassium channel toxin alpha-KTx 1.14 OS=Mesobuthus martensii PE=2 SV=1
16 : KAX1B_CENNO 0.51 0.63 2 36 2 36 35 0 0 37 P0C182 Potassium channel toxin alpha-KTx 1.11 OS=Centruroides noxius PE=1 SV=1
17 : KAX43_TITDI 0.44 0.61 2 37 2 37 36 0 0 37 P59925 Potassium channel toxin alpha-KTx 4.3 OS=Tityus discrepans PE=1 SV=1
18 : KAX44_TITOB 0.44 0.58 2 37 2 37 36 0 0 37 P60210 Potassium channel toxin alpha-KTx 4.4 OS=Tityus obscurus PE=1 SV=1
19 : KAX21_CENNO 1SXM 0.43 0.65 2 37 2 38 37 1 1 39 P08815 Potassium channel toxin alpha-KTx 2.1 OS=Centruroides noxius PE=1 SV=3
## ALIGNMENTS 1 - 19
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A X 0 0 147 0 0
2 2 A F - 0 0 121 20 7 FFFFFFFFFFFFFFFFFFI
3 3 A T - 0 0 15 20 47 TTTTTTTTITTTTITIIII
4 4 A N + 0 0 151 20 33 NDNQNNNDDDDDDDDDNNN
5 5 A V - 0 0 76 20 12 VVVEVVVVVVVVVVVVVVV
6 6 A S + 0 0 95 20 62 SSSSSSSDSKKKKKRDKKK
7 7 A a + 0 0 2 20 0 CCCCCCCCCCCCCCCCCCC
8 8 A T S S+ 0 0 113 20 46 TTTTSSSSSTTTTTSTTRT
9 9 A T S >> S- 0 0 86 20 64 TTTAAAAVVGGAATAVGGS
10 10 A S T 34 S+ 0 0 69 20 9 SSSSSSSSSSSSSSSSSSP
11 11 A K T >4 S+ 0 0 174 20 37 KKKNSSSKKKKKKKSKKKK
12 12 A E T <4 S+ 0 0 107 20 35 EEEQQQQEEQQQQEKEQEQ
13 13 A X T 3X S+ 0 0 6 19 0 CCCCCCCCCCCCCCCCCCC
14 14 A W T <4 S+ 0 0 100 20 25 WWWWWWWWWWWWWWWWLLS
15 15 A S T > S+ 0 0 82 20 54 SSSSPPPSAPPPPPPAPPK
16 16 A V H > S+ 0 0 42 20 54 VVVIVVVVPVVVVPVPAAP
17 17 A b H X>S+ 0 0 0 20 0 CCCCCCCCCCCCCCCCCCC
18 18 A Q H 45S+ 0 0 98 20 37 QQEKKEKKKKKNKKKKKKK
19 19 A R H <5S+ 0 0 202 20 78 RRKRKKKDAQQQQAKAAAE
20 20 A L H <5S- 0 0 110 20 52 LLLLLLLLAMMMMALAAAL
21 21 A H T <5S- 0 0 63 20 69 HHYHFFFFVFFFFTFFVVY
22 22 A N S