Complet list of 1b4g hssp file
Complete list of 1b4g.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1B4G
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER POTASSIUM CHANNEL 22-DEC-98 1B4G
COMPND MOL_ID: 1; MOLECULE: POTASSIUM CHANNEL; CHAIN: A; FRAGMENT: INACTIVATI
SOURCE MOL_ID: 1; SYNTHETIC: YES; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM
AUTHOR C.ANTZ,T.BAUER,H.KALBACHER,R.FRANK,M.COVARRUBIAS,H.R.KALBITZER, J.P.RU
DBREF 1B4G A 1 30 UNP Q03721 KCNC4_HUMAN 1 30
SEQLENGTH 30
NCHAIN 1 chain(s) in 1B4G data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : D2HBI7_AILME 0.97 0.97 1 30 1 30 30 0 0 605 D2HBI7 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_007891 PE=4 SV=1
2 : E1B7T7_BOVIN 0.97 0.97 1 30 1 30 30 0 0 623 E1B7T7 Uncharacterized protein OS=Bos taurus GN=KCNC4 PE=4 SV=2
3 : F6Q125_MACMU 0.97 0.97 1 30 1 30 30 0 0 578 F6Q125 Uncharacterized protein OS=Macaca mulatta GN=KCNC4 PE=4 SV=1
4 : F6Q134_MACMU 0.97 0.97 1 30 1 30 30 0 0 632 F6Q134 Uncharacterized protein OS=Macaca mulatta GN=KCNC4 PE=4 SV=1
5 : F6WMM4_HORSE 0.97 0.97 1 30 1 30 30 0 0 612 F6WMM4 Uncharacterized protein OS=Equus caballus GN=KCNC4 PE=4 SV=1
6 : F6XGB3_MONDO 0.97 0.97 1 30 1 30 30 0 0 625 F6XGB3 Uncharacterized protein OS=Monodelphis domestica GN=KCNC4 PE=4 SV=2
7 : F7D0Z3_CALJA 0.97 0.97 1 30 1 30 30 0 0 624 F7D0Z3 Uncharacterized protein OS=Callithrix jacchus GN=KCNC4 PE=4 SV=1
8 : F7DJP3_CALJA 0.97 0.97 1 30 1 30 30 0 0 578 F7DJP3 Uncharacterized protein OS=Callithrix jacchus GN=KCNC4 PE=4 SV=1
9 : G1QTR9_NOMLE 0.97 0.97 1 30 1 30 30 0 0 626 G1QTR9 Uncharacterized protein OS=Nomascus leucogenys GN=KCNC4 PE=4 SV=1
10 : G1QTS2_NOMLE 0.97 0.97 1 30 1 30 30 0 0 632 G1QTS2 Uncharacterized protein OS=Nomascus leucogenys GN=KCNC4 PE=4 SV=1
11 : G3IJ04_CRIGR 0.97 0.97 1 30 1 30 30 0 0 623 G3IJ04 Potassium voltage-gated channel subfamily C member 4 OS=Cricetulus griseus GN=I79_023834 PE=4 SV=1
12 : G3SH62_GORGO 0.97 0.97 1 30 1 30 30 0 0 635 G3SH62 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101137630 PE=4 SV=1
13 : G3TZ52_LOXAF 0.97 0.97 1 30 1 30 30 0 0 624 G3TZ52 Uncharacterized protein OS=Loxodonta africana GN=KCNC4 PE=4 SV=1
14 : G3U1L4_LOXAF 0.97 0.97 1 30 1 30 30 0 0 593 G3U1L4 Uncharacterized protein OS=Loxodonta africana GN=KCNC4 PE=4 SV=1
15 : G5BD75_HETGA 0.97 0.97 1 30 1 30 30 0 0 624 G5BD75 Potassium voltage-gated channel subfamily C member 4 OS=Heterocephalus glaber GN=GW7_07810 PE=4 SV=1
16 : G7MIF6_MACMU 0.97 0.97 1 30 1 30 30 0 0 524 G7MIF6 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_01067 PE=4 SV=1
17 : H0XKD6_OTOGA 0.97 0.97 1 30 1 30 30 0 0 626 H0XKD6 Uncharacterized protein OS=Otolemur garnettii GN=KCNC4 PE=4 SV=1
18 : H2N6G1_PONAB 0.97 0.97 1 30 1 30 30 0 0 626 H2N6G1 Uncharacterized protein OS=Pongo abelii GN=KCNC4 PE=4 SV=2
19 : H2R8Q5_PANTR 0.97 0.97 1 30 1 30 30 0 0 635 H2R8Q5 Potassium voltage-gated channel, Shaw-related subfamily, member 4 OS=Pan troglodytes GN=KCNC4 PE=2 SV=1
20 : H7BZ66_HUMAN 0.97 0.97 1 30 1 30 30 0 0 624 H7BZ66 Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=2 SV=1
21 : I2CWZ2_MACMU 0.97 0.97 1 30 1 30 30 0 0 623 I2CWZ2 Potassium voltage-gated channel subfamily C member 4 isoform c OS=Macaca mulatta GN=KCNC4 PE=2 SV=1
22 : K7BJ26_PANTR 0.97 0.97 1 30 1 30 30 0 0 626 K7BJ26 Potassium voltage-gated channel, Shaw-related subfamily, member 4 OS=Pan troglodytes GN=KCNC4 PE=2 SV=1
23 : K7D7P3_PANTR 0.97 0.97 1 30 1 30 30 0 0 626 K7D7P3 Potassium voltage-gated channel, Shaw-related subfamily, member 4 OS=Pan troglodytes GN=KCNC4 PE=2 SV=1
24 : K7FGH7_PELSI 0.97 0.97 1 30 1 30 30 0 0 597 K7FGH7 Uncharacterized protein OS=Pelodiscus sinensis GN=KCNC4 PE=4 SV=1
25 : KCNC4_HUMAN 0.97 0.97 1 30 1 30 30 0 0 635 Q03721 Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2
26 : KCNC4_MOUSE 0.97 0.97 1 30 1 30 30 0 0 628 Q8R1C0 Potassium voltage-gated channel subfamily C member 4 OS=Mus musculus GN=Kcnc4 PE=2 SV=1
27 : KCNC4_RAT 0.97 0.97 1 30 1 30 30 0 0 625 Q63734 Potassium voltage-gated channel subfamily C member 4 OS=Rattus norvegicus GN=Kcnc4 PE=1 SV=1
28 : L5K5Z7_PTEAL 0.97 0.97 1 30 1 30 30 0 0 654 L5K5Z7 Potassium voltage-gated channel subfamily C member 4 OS=Pteropus alecto GN=PAL_GLEAN10017372 PE=4 SV=1
29 : L5LXD8_MYODS 0.97 0.97 1 30 1 30 30 0 0 472 L5LXD8 Potassium voltage-gated channel subfamily C member 4 OS=Myotis davidii GN=MDA_GLEAN10024738 PE=4 SV=1
30 : M3XXI4_MUSPF 0.97 0.97 1 30 1 30 30 0 0 626 M3XXI4 Uncharacterized protein OS=Mustela putorius furo GN=KCNC4 PE=4 SV=1
31 : M7B337_CHEMY 0.97 0.97 1 30 1 30 30 0 0 786 M7B337 Potassium voltage-gated channel subfamily C member 4 OS=Chelonia mydas GN=UY3_10508 PE=4 SV=1
32 : U3CRS9_CALJA 0.97 0.97 1 30 1 30 30 0 0 629 U3CRS9 Potassium voltage-gated channel subfamily C member 4 isoform c OS=Callithrix jacchus GN=KCNC4 PE=2 SV=1
33 : U3EAY6_CALJA 0.97 0.97 1 30 1 30 30 0 0 626 U3EAY6 Potassium voltage-gated channel subfamily C member 4 isoform c OS=Callithrix jacchus GN=KCNC4 PE=2 SV=1
34 : U3EG98_CALJA 0.97 0.97 1 30 1 30 30 0 0 626 U3EG98 Potassium voltage-gated channel subfamily C member 4 isoform c OS=Callithrix jacchus GN=KCNC4 PE=2 SV=1
35 : W5K4R0_ASTMX 0.97 0.97 1 30 1 30 30 0 0 625 W5K4R0 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
36 : W5QDS2_SHEEP 0.97 0.97 1 30 1 30 30 0 0 629 W5QDS2 Uncharacterized protein OS=Ovis aries GN=KCNC4 PE=4 SV=1
37 : A5WUQ2_DANRE 0.93 0.97 1 30 1 30 30 0 0 581 A5WUQ2 Uncharacterized protein OS=Danio rerio GN=kcnc4 PE=4 SV=1
38 : B0R045_DANRE 0.93 0.97 1 30 1 30 30 0 0 206 B0R045 Novel protein similar to vertebrate potassium voltage-gated channel, Shaw-related subfamily, member 4 (KCNC4) (Fragment) OS=Danio rerio GN=CH211-199O1.1-001 PE=4 SV=1
39 : E0R7P9_DANRE 0.93 0.97 1 30 1 30 30 0 0 603 E0R7P9 Uncharacterized protein OS=Danio rerio GN=kcnc4 PE=2 SV=1
40 : E1C3U8_CHICK 0.93 0.97 1 30 1 30 30 0 0 611 E1C3U8 Uncharacterized protein OS=Gallus gallus GN=KCNC4 PE=4 SV=2
41 : F1PBM4_CANFA 0.93 0.93 1 30 1 30 30 0 0 598 F1PBM4 Uncharacterized protein OS=Canis familiaris GN=KCNC4 PE=4 SV=2
42 : G1MSJ0_MELGA 0.93 0.97 1 30 1 30 30 0 0 607 G1MSJ0 Uncharacterized protein OS=Meleagris gallopavo GN=KCNC4 PE=4 SV=2
43 : G3NYQ7_GASAC 0.93 0.93 1 29 1 29 29 0 0 573 G3NYQ7 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
44 : H3BFQ1_LATCH 0.93 0.93 1 30 1 30 30 0 0 599 H3BFQ1 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
45 : H3DCE4_TETNG 0.93 0.97 1 30 1 30 30 0 0 569 H3DCE4 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
46 : J9NTS6_CANFA 0.93 0.93 1 30 1 30 30 0 0 630 J9NTS6 Uncharacterized protein OS=Canis familiaris GN=KCNC4 PE=4 SV=1
47 : Q4RVT7_TETNG 0.93 0.97 1 30 1 30 30 0 0 582 Q4RVT7 Chromosome 9 SCAF14991, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00028178001 PE=4 SV=1
48 : U3JK72_FICAL 0.93 0.97 1 30 1 30 30 0 0 606 U3JK72 Uncharacterized protein OS=Ficedula albicollis GN=KCNC4 PE=4 SV=1
49 : V8NVQ5_OPHHA 0.93 0.97 1 30 1 30 30 0 0 488 V8NVQ5 Potassium voltage-gated channel subfamily C member 4 (Fragment) OS=Ophiophagus hannah GN=KCNC4 PE=4 SV=1
50 : W5N167_LEPOC 0.93 0.97 1 30 1 30 30 0 0 603 W5N167 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
51 : G1KMP2_ANOCA 0.90 0.97 1 30 1 30 30 0 0 628 G1KMP2 Uncharacterized protein OS=Anolis carolinensis GN=KCNC4 PE=4 SV=2
52 : H2LNW4_ORYLA 0.90 0.97 1 30 1 30 30 0 0 558 H2LNW4 Uncharacterized protein OS=Oryzias latipes GN=LOC101165306 PE=4 SV=1
53 : I3J2R8_ORENI 0.90 0.97 1 30 1 30 30 0 0 598 I3J2R8 Uncharacterized protein OS=Oreochromis niloticus GN=kcnc4 PE=4 SV=1
54 : M4A6K6_XIPMA 0.90 0.97 1 30 1 30 30 0 0 595 M4A6K6 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
55 : H3B663_LATCH 0.80 0.93 1 30 1 30 30 0 0 609 H3B663 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
56 : V8P3V8_OPHHA 0.80 0.93 1 30 1 30 30 0 0 210 V8P3V8 Potassium voltage-gated channel subfamily C member 4 (Fragment) OS=Ophiophagus hannah GN=KCNC4 PE=4 SV=1
57 : G3RVG8_GORGO 0.67 0.70 1 30 44 70 30 1 3 551 G3RVG8 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101137630 PE=4 SV=1
58 : E1AZA4_DANRE 0.53 0.87 1 30 1 30 30 0 0 642 E1AZA4 Uncharacterized protein OS=Danio rerio GN=kcnc3a PE=2 SV=1
59 : E1AZA5_DANRE 0.53 0.87 1 30 1 30 30 0 0 659 E1AZA5 Uncharacterized protein OS=Danio rerio GN=kcnc3a PE=2 SV=1
60 : E1AZA6_DANRE 0.53 0.87 1 30 1 30 30 0 0 647 E1AZA6 Uncharacterized protein OS=Danio rerio GN=kcnc3b PE=2 SV=1
61 : E6ZH08_DICLA 0.53 0.87 1 30 1 30 30 0 0 650 E6ZH08 Potassium voltage-gated channel subfamily C member 1 OS=Dicentrarchus labrax GN=KCNC1 PE=4 SV=1
62 : F1Q4T8_DANRE 0.53 0.87 1 30 1 30 30 0 0 666 F1Q4T8 Uncharacterized protein OS=Danio rerio GN=kcnc3a PE=4 SV=1
63 : G3NZB2_GASAC 0.53 0.87 1 30 1 30 30 0 0 651 G3NZB2 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
64 : G3NZB7_GASAC 0.53 0.87 1 30 1 30 30 0 0 596 G3NZB7 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
65 : H2LRJ2_ORYLA 0.53 0.87 1 30 1 30 30 0 0 654 H2LRJ2 Uncharacterized protein OS=Oryzias latipes PE=4 SV=1
66 : H2U9U7_TAKRU 0.53 0.87 1 30 1 30 30 0 0 650 H2U9U7 Uncharacterized protein OS=Takifugu rubripes GN=LOC101072757 PE=4 SV=1
67 : H2U9U8_TAKRU 0.53 0.87 1 30 1 30 30 0 0 605 H2U9U8 Uncharacterized protein OS=Takifugu rubripes GN=LOC101072757 PE=4 SV=1
68 : H2U9U9_TAKRU 0.53 0.87 1 30 1 30 30 0 0 598 H2U9U9 Uncharacterized protein OS=Takifugu rubripes GN=LOC101072757 PE=4 SV=1
69 : I3KVV9_ORENI 0.53 0.87 1 30 39 68 30 0 0 677 I3KVV9 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100703675 PE=4 SV=1
70 : M7BX54_CHEMY 0.53 0.90 1 30 1 30 30 0 0 191 M7BX54 Potassium voltage-gated channel subfamily C member 4 OS=Chelonia mydas GN=UY3_00968 PE=4 SV=1
71 : S4RKN9_PETMA 0.50 0.83 1 30 1 30 30 0 0 632 S4RKN9 Uncharacterized protein OS=Petromyzon marinus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 125 72 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
2 2 A I B >> -A 6 0A 122 72 38 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILIIIILILLLLLLLLLLLLL
3 3 A S T 34 S- 0 0 104 72 6 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
4 4 A S T 34 S+ 0 0 129 72 3 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSWSSSSWSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A V T <4 S+ 0 0 109 72 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
6 6 A C B < -A 2 0A 70 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
7 7 A V - 0 0 121 72 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
8 8 A X - 0 0 134 71 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A S - 0 0 94 72 9 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSTSSSSSSSSSSSSSSSS
10 10 A Y S S- 0 0 117 72 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYCYYYYYYYYYYFFYFFFFFFFFFFFFF
11 11 A R - 0 0 215 72 42 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKKKKKKKKKKKKR
12 12 A G S S+ 0 0 36 72 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
13 13 A R + 0 0 199 72 11 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRLRRRRRRRRRRRRR
14 14 A K S S- 0 0 118 72 5 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGKKKKKKKKKKKKK
15 15 A S S S+ 0 0 130 72 50 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSEGGGGGGGGGGGGP
16 16 A G S S+ 0 0 55 71 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGG
17 17 A N - 0 0 67 71 5 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN.NNNNNNNNNNNNS
18 18 A K - 0 0 111 71 5 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK.KKKKKKKKKKKKQ
19 19 A P - 0 0 42 72 63 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQSSSSSSSSSSSSA
20 20 A P S S+ 0 0 123 72 55 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPASSSSSSSSSSSSP
21 21 A S S S+ 0 0 91 72 65 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNNNNNNNNTTTNA
22 22 A K + 0 0 125 72 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKKKKKKKKK
23 23 A T + 0 0 69 72 68 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSSSTTTTTSTSTTTSSSSSSTAAAAAAAAAAAAS
24 24 A C + 0 0 122 72 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCFCCCCCCCCCCCCCCCCCCCCCCCCCCC
25 25 A L S S- 0 0 104 72 64 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLYYYYYYYYYYYYA
26 26 A K + 0 0 120 72 70 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSSSSSSSSSSSSR
27 27 A E + 0 0 68 72 66 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGGEAAAAAAAAAAAAG
28 28 A E S S- 0 0 115 72 27 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDDDDDDDDDDDDD
29 29 A M 0 0 187 72 1 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
30 30 A A 0 0 103 71 62 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAG AAAAGGGAAAAGGATTTTTTTTTTTTG
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A M 0 0 125 72 0 M
2 2 A I B >> -A 6 0A 122 72 38 F
3 3 A S T 34 S- 0 0 104 72 6 T
4 4 A S T 34 S+ 0 0 129 72 3 S
5 5 A V T <4 S+ 0 0 109 72 0 V
6 6 A C B < -A 2 0A 70 72 0 C
7 7 A V - 0 0 121 72 2 I
8 8 A X - 0 0 134 71 0 S
9 9 A S - 0 0 94 72 9 P
10 10 A Y S S- 0 0 117 72 6 Y
11 11 A R - 0 0 215 72 42 C
12 12 A G S S+ 0 0 36 72 0 G
13 13 A R + 0 0 199 72 11 H
14 14 A K S S- 0 0 118 72 5 K
15 15 A S S S+ 0 0 130 72 50 S
16 16 A G S S+ 0 0 55 71 0 G
17 17 A N - 0 0 67 71 5 N
18 18 A K - 0 0 111 71 5 K
19 19 A P - 0 0 42 72 63 S
20 20 A P S S+ 0 0 123 72 55 P
21 21 A S S S+ 0 0 91 72 65 C
22 22 A K + 0 0 125 72 4 K
23 23 A T + 0 0 69 72 68 S
24 24 A C + 0 0 122 72 2 C
25 25 A L S S- 0 0 104 72 64 L
26 26 A K + 0 0 120 72 70 D
27 27 A E + 0 0 68 72 66 G
28 28 A E S S- 0 0 115 72 27 D
29 29 A M 0 0 187 72 1 L
30 30 A A 0 0 103 71 62 G
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
2 2 A 0 21 78 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.582 19 0.61
3 3 A 0 0 0 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.94
4 4 A 0 0 0 0 0 3 0 0 0 0 97 0 0 0 0 0 0 0 0 0 72 0 0 0.127 4 0.96
5 5 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
7 7 A 99 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.98
8 8 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 71 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 1 96 3 0 0 0 0 0 0 0 0 72 0 0 0.200 6 0.91
10 10 A 0 0 0 0 21 0 78 0 0 0 0 0 1 0 0 0 0 0 0 0 72 0 0 0.582 19 0.93
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 1 0 82 17 0 0 0 0 72 0 0 0.521 17 0.58
12 12 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
13 13 A 0 1 0 0 0 0 0 0 0 0 0 0 0 1 97 0 0 0 0 0 72 0 0 0.146 4 0.89
14 14 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 99 0 0 0 0 72 0 0 0.073 2 0.95
15 15 A 0 0 0 0 0 0 0 17 0 1 81 0 0 0 0 0 0 1 0 0 72 1 0 0.592 19 0.49
16 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 99 0 71 0 0 0.074 2 0.94
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 1 0 0 0 71 0 0 0.074 2 0.95
19 19 A 0 0 0 0 0 0 0 0 1 79 18 0 0 0 0 0 1 0 0 0 72 0 0 0.613 20 0.37
20 20 A 0 0 0 0 0 0 0 0 1 82 17 0 0 0 0 0 0 0 0 0 72 0 0 0.521 17 0.45
21 21 A 0 0 0 0 0 0 0 0 1 0 81 4 1 0 0 0 0 0 13 0 72 0 0 0.685 22 0.34
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 1 0 0 72 0 0 0.073 2 0.96
23 23 A 0 0 0 0 0 0 0 0 17 0 18 65 0 0 0 0 0 0 0 0 72 0 0 0.886 29 0.32
24 24 A 0 0 0 0 1 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 72 0 0 0.073 2 0.98
25 25 A 0 82 0 0 0 0 17 0 1 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.521 17 0.36
26 26 A 0 0 0 0 0 0 0 0 0 0 17 0 0 0 1 81 0 0 0 1 72 0 0 0.592 19 0.30
27 27 A 0 0 0 0 0 0 0 6 17 0 0 0 0 0 0 0 0 78 0 0 72 0 0 0.655 21 0.33
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 22 72 0 0 0.530 17 0.73
29 29 A 0 1 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.99
30 30 A 0 0 0 0 0 0 0 13 70 0 0 17 0 0 0 0 0 0 0 0 71 0 0 0.809 27 0.38
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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