Complet list of 1axh hssp file
Complete list of 1axh.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1AXH
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-19
HEADER NEUROTOXIN 04-NOV-96 1AXH
COMPND MOL_ID: 1; MOLECULE: ATRACOTOXIN-HVI; CHAIN: A; SYNONYM: ACTX-HVI; ENG
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HADRONYCHE VERSUTA; ORGANISM_TAXID: 69
AUTHOR J.I.FLETCHER,S.I.O'DONOGHUE,M.NILGES,G.F.KING
DBREF 1AXH A 1 37 UNP P56207 TOT1A_HADVE 1 37
SEQLENGTH 37
NCHAIN 1 chain(s) in 1AXH data set
NALIGN 36
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TOT1A_HADVE 1HVW 1.00 1.00 1 37 1 37 37 0 0 37 P56207 Omega-hexatoxin-Hv1a OS=Hadronyche versuta PE=1 SV=1
2 : TOT1D_ATRRO 1.00 1.00 1 37 42 78 37 0 0 78 A5A3H3 Omega-hexatoxin-Ar1d OS=Atrax robustus PE=2 SV=1
3 : TOT1C_HADVE 0.97 1.00 1 37 1 37 37 0 0 37 P81596 Omega-hexatoxin-Hv1c OS=Hadronyche versuta PE=1 SV=1
4 : TOT1E_HADVE 0.97 1.00 1 37 1 37 37 0 0 37 P81598 Omega-hexatoxin-Hv1e OS=Hadronyche versuta PE=1 SV=1
5 : TOT1F_ATRRO 0.97 0.97 1 37 42 78 37 0 0 78 A5A3H5 Omega-hexatoxin-Ar1f OS=Atrax robustus PE=2 SV=1
6 : TOT1B_HADFO 0.95 0.95 1 37 1 37 37 0 0 37 P0C2L4 Omega-hexatoxin-Hf1a OS=Hadronyche formidabilis PE=1 SV=1
7 : TOT1B_HADVE 0.95 1.00 1 37 1 37 37 0 0 37 P81595 Omega-hexatoxin-Hv1b OS=Hadronyche versuta PE=1 SV=1
8 : TOT1C_ATRRO 0.95 0.97 1 37 42 78 37 0 0 78 A5A3H2 Omega-hexatoxin-Ar1c OS=Atrax robustus PE=2 SV=1
9 : S0F1N1_9ARAC 0.92 1.00 1 37 48 84 37 0 0 84 S0F1N1 Omega-hexatoxin-Hvn1b_3 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
10 : S0F1N7_9ARAC 0.92 1.00 1 37 48 84 37 0 0 84 S0F1N7 Omega-hexatoxin-Hvn1b_4 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
11 : S0F205_9ARAC 0.92 1.00 1 37 48 84 37 0 0 84 S0F205 Omega-hexatoxin-Hvn1b_2 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
12 : S0F211_9ARAC 0.92 1.00 1 37 48 84 37 0 0 84 S0F211 Omega-hexatoxin-Hvn1b_1 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
13 : S0F212_9ARAC 0.92 1.00 1 37 48 84 37 0 0 84 S0F212 Omega-hexatoxin-Hvn1b_6 insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
14 : TOT1D_HADVE 0.92 1.00 1 37 1 37 37 0 0 37 P81597 Omega-hexatoxin-Hv1d OS=Hadronyche versuta PE=1 SV=1
15 : TOT1E_ATRRO 0.92 1.00 1 37 42 78 37 0 0 78 A5A3H4 Omega-hexatoxin-Ar1e OS=Atrax robustus PE=2 SV=1
16 : TOT1B_HADIN 0.89 0.95 1 37 1 37 37 0 0 37 P0C2L6 Omega-hexatoxin-Hi1b OS=Hadronyche infensa PE=1 SV=1
17 : S0F1N0_HADIN 0.86 0.92 1 37 43 79 37 0 0 79 S0F1N0 Omega-hexatoxin-Hi1e insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
18 : S0F1N6_HADIN 0.86 0.95 1 37 43 79 37 0 0 79 S0F1N6 Omega-hexatoxin-Hi1d insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
19 : S0F204_HADIN 0.86 0.92 1 37 43 79 37 0 0 79 S0F204 Omega-hexatoxin-Hi1f insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
20 : TOT1A_ATRRO 0.84 0.95 1 37 49 85 37 0 0 85 P83580 Omega-hexatoxin-Ar1a OS=Atrax robustus PE=1 SV=2
21 : S0F1M4_9ARAC 0.76 0.86 1 37 47 83 37 0 0 83 S0F1M4 Omega-hexatoxin-Hvn1a insecticidal toxin OS=Hadronyche venenata PE=4 SV=1
22 : TOT1C_HADIN 0.76 0.89 1 37 1 37 37 0 0 37 P0C2L7 Omega-hexatoxin-Hi1c OS=Hadronyche infensa PE=1 SV=1
23 : TOT1F_HADVE 0.73 0.86 1 37 1 37 37 0 0 37 P81599 Omega-hexatoxin-Hv1f OS=Hadronyche versuta PE=1 SV=1
24 : S0F1M8_HADIN 0.72 0.89 2 37 43 78 36 0 0 78 S0F1M8 Omega-hexatoxin-Hi1g_2 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
25 : S0F1N4_HADIN 0.72 0.89 2 37 43 78 36 0 0 78 S0F1N4 Omega-hexatoxin-Hi1g_1 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
26 : S0F215_HADIN 0.72 0.89 2 37 43 78 36 0 0 78 S0F215 Omega-hexatoxin-Hi1g_3 insecticidal toxin OS=Hadronyche infensa PE=4 SV=1
27 : TOT1A_HADIN 0.72 0.89 2 37 1 36 36 0 0 36 P0C2L5 Omega-hexatoxin-Hi1a OS=Hadronyche infensa PE=1 SV=1
28 : TOT1B_ATRRO 0.69 0.83 2 36 38 72 35 0 0 73 A5A3H1 Omega-hexatoxin-Ar1b OS=Atrax robustus PE=2 SV=1
29 : TOM1A_MISBR 0.50 0.66 1 36 1 38 38 2 2 39 P83588 Omega-actinopoditoxin-Mb1a OS=Missulena bradleyi PE=1 SV=1
30 : U9TPR4_RHIID 0.50 0.59 2 30 187 218 32 2 3 221 U9TPR4 Uncharacterized protein OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) GN=GLOINDRAFT_84831 PE=4 SV=1
31 : S0F1M6_ATRRO 0.49 0.69 4 36 40 74 35 2 2 76 S0F1M6 Omega/Kappa-hexatoxin-Ar1g_1 insecticidal toxin OS=Atrax robustus PE=4 SV=1
32 : S0F1N2_ATRRO 0.49 0.69 4 36 40 74 35 2 2 76 S0F1N2 Omega/Kappa-hexatoxin-Ar1g_2 insecticidal toxin OS=Atrax robustus PE=4 SV=1
33 : S0F207_HADVE 0.49 0.69 4 36 40 74 35 2 2 76 S0F207 Omega-hexatoxin-Hv1g_3 insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
34 : S0F208_HADVE 0.49 0.69 4 36 40 74 35 2 2 76 S0F208 Omega/Kappa-hexatoxin-Hv1g_6 insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
35 : S0F209_HADVE 0.49 0.69 4 36 40 74 35 2 2 76 S0F209 Omega/Kappa-hexatoxin-Hv1h insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
36 : S0F214_HADVE 0.49 0.69 4 36 40 74 35 2 2 76 S0F214 Omega/Kappa-hexatoxin-Hv1g_5 insecticidal toxin OS=Hadronyche versuta PE=4 SV=1
## ALIGNMENTS 1 - 36
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 147 25 0 SSSSSSSSSSSSSSSSSSSSSSS S
2 2 A P + 0 0 139 31 42 PPSPPPSPPPPPPPPPPPPSPSASSSSGPP
3 3 A T - 0 0 107 31 30 TTTTTTTTTTTTTTTTTTTVTTVTTTTAVT
4 4 A a S S- 0 0 46 37 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
5 5 A I B -a 17 0A 18 37 44 IIIIIIIIIIIIIIIIIIIIIIITTTTTTMVVVVVV
6 6 A P > - 0 0 56 37 7 PPPPPRPPPPPPPPPPPPPPPRPPPPPPPPPPPPPP
7 7 A S T 3 S+ 0 0 75 37 76 SSSSSSSSSSSSSSSTTTTSSTSTTTTTSDVVVVVV
8 8 A G T 3 S+ 0 0 60 37 31 GGGGGGGGGGGGGGGGGGGGGDGDDDDGGGDDDDDD
9 9 A Q S < S- 0 0 96 37 10 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQSQQQQQQ
10 10 A P B -B 35 0B 84 37 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
11 11 A b - 0 0 5 37 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12 12 A P S S+ 0 0 59 37 48 PPPPPPPPPPPPPPPPPPPPPPPPPPPPQTSSSSSS
13 13 A Y S > S- 0 0 162 37 55 YYYYYYYYYYYYYYYYYYYYYYYYYYYYPLLLLLLL
14 14 A N G > S+ 0 0 80 37 21 NNNNNNNNNNNNNNNNNNNNNNSDDDHNndnnnnnn
15 15 A E G 3 S+ 0 0 165 37 42 EEEEEEEEEEEEEEEEEEEEEEKEEEEEqiqqqqqq
16 16 A N G < S+ 0 0 70 37 78 NNNNNNNNNNNNNNNNNNNHNSYSSSSSPTPPPPPP
17 17 A c B < -a 5 0A 0 37 1 CCCCCCCYCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A a S S+ 0 0 54 37 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
19 19 A S S S- 0 0 58 37 57 SSSSSSSSSSSSSSSSSNSSSSSSSSSSNHDDDDDD
20 20 A Q S S+ 0 0 112 37 64 QQQQQQQQKKKKKKKQQQQGKGGGGGGGNQdddddd
21 21 A S - 0 0 57 37 44 SSSSSSSSSSSSSSSSSSSSSSSSSSSSAStttttt
22 22 A b E -C 36 0B 17 37 13 CCCCCCCCCCCCCCCCCCCCCCCCCCCCECCCCCCC
23 23 A T E -C 35 0B 41 37 26 TTTTTTTTTTTTTTTTTTTTTTTTTTTQEFTTTTTT
24 24 A F E +C 34 0B 107 37 85 FFFYFFYFYYYYYYYYYYYYYYYYYYYEEFQQQQQQ
25 25 A K E -C 33 0B 104 37 54 KKKKKKKKKKKKKKKKKKKKKKKKKKKQQGEEEEEE
26 26 A E E -C 32 0B 142 37 88 EEEEETEEEEEEEEEAAATEEATAAAALTDLLLLRL
27 27 A N - 0 0 49 37 18 NNNNNNNNNNNNNNNNNNNNMNNNNNNNINNNNNNN
28 28 A E S S+ 0 0 194 37 25 EEEEEEEEEEEEEEEEEEEEKEEEEEEEnfEEEEEE
29 29 A N S S- 0 0 138 37 9 NNNNTNNNNNNNNNNNNNNNTNNNNNNNnnNNNNNN
30 30 A G S S+ 0 0 53 37 26 GGGGGGGAGGGGGGGGGGGGAGGGGGGGGGDDDDGD
31 31 A N - 0 0 96 36 15 NNNNNNNNNNNNNNNNNNNNTNNNNNNHN NNNNHN
32 32 A T E + C 0 26B 76 36 52 TTTTTTTTTTTTTTTQQQQTPQSQQQQTT TTTTTT
33 33 A V E - C 0 25B 69 36 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVV VVVVVV
34 34 A K E + C 0 24B 63 36 96 KKKKKKKKQQQQQQQKKKKQQKQKKKKKY YYYYYY
35 35 A R E -BC 10 23B 62 36 79 RRRRRRRRRRRRRRRRGRGRRRRRRRRRR YYYYYY
36 36 A c E C 0 22B 4 36 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCC
37 37 A D 0 0 110 28 0 DDDDDDDDDDDDDDDDDDDDDDDDDDD
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 25 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 3 3 68 26 0 0 0 0 0 0 0 0 0 31 0 0 0.835 27 0.57
3 3 A 10 0 0 0 0 0 0 0 3 0 0 87 0 0 0 0 0 0 0 0 31 0 0 0.457 15 0.69
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 37 0 0 0.000 0 1.00
5 5 A 16 0 65 3 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 37 0 0 0.968 32 0.55
6 6 A 0 0 0 0 0 0 0 0 0 95 0 0 0 0 5 0 0 0 0 0 37 0 0 0.210 7 0.92
7 7 A 16 0 0 0 0 0 0 0 0 0 54 27 0 0 0 0 0 0 0 3 37 0 0 1.079 36 0.24
8 8 A 0 0 0 0 0 0 0 70 0 0 0 0 0 0 0 0 0 0 0 30 37 0 0 0.609 20 0.68
9 9 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 97 0 0 0 37 0 0 0.124 4 0.89
10 10 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 37 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 37 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 78 16 3 0 0 0 0 3 0 0 0 37 0 0 0.681 22 0.52
13 13 A 0 19 0 0 0 0 78 0 0 3 0 0 0 0 0 0 0 0 0 0 37 0 0 0.604 20 0.44
14 14 A 0 0 0 0 0 0 0 0 0 0 3 0 0 3 0 0 0 0 84 11 37 0 8 0.584 19 0.79
15 15 A 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 3 19 76 0 0 37 0 0 0.721 24 0.57
16 16 A 0 0 0 0 0 0 3 0 0 19 16 3 0 3 0 0 0 0 57 0 37 0 0 1.224 40 0.21
17 17 A 0 0 0 0 0 0 3 0 0 0 0 0 97 0 0 0 0 0 0 0 37 0 0 0.124 4 0.98
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 37 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 76 0 0 3 0 0 0 0 5 16 37 0 0 0.761 25 0.43
20 20 A 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 22 38 0 3 16 37 0 6 1.423 47 0.36
21 21 A 0 0 0 0 0 0 0 0 3 0 81 16 0 0 0 0 0 0 0 0 37 0 0 0.563 18 0.56
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 3 0 0 37 0 0 0.124 4 0.87
23 23 A 0 0 0 0 3 0 0 0 0 0 0 92 0 0 0 0 3 3 0 0 37 0 0 0.370 12 0.73
24 24 A 0 0 0 0 22 0 57 0 0 0 0 0 0 0 0 0 16 5 0 0 37 0 0 1.105 36 0.15
25 25 A 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 76 5 16 0 0 37 0 0 0.761 25 0.45
26 26 A 0 16 0 0 0 0 0 0 22 0 0 11 0 0 3 0 0 46 0 3 37 0 0 1.419 47 0.12
27 27 A 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 37 0 0 0.248 8 0.82
28 28 A 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 3 0 92 3 0 37 0 2 0.370 12 0.75
29 29 A 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 95 0 37 0 0 0.210 7 0.91
30 30 A 0 0 0 0 0 0 0 81 5 0 0 0 0 0 0 0 0 0 0 14 37 0 0 0.598 19 0.73
31 31 A 0 0 0 0 0 0 0 0 0 0 0 3 0 6 0 0 0 0 92 0 36 0 0 0.340 11 0.84
32 32 A 0 0 0 0 0 0 0 0 0 3 3 69 0 0 0 0 25 0 0 0 36 0 0 0.799 26 0.48
33 33 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 19 0 0 0 0 0 0 0 0 53 28 0 0 0 36 0 0 1.012 33 0.03
35 35 A 0 0 0 0 0 0 17 6 0 0 0 0 0 0 78 0 0 0 0 0 36 0 0 0.655 21 0.21
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 36 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 28 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
29 15 15 1 nTq
29 29 30 1 nCn
30 14 200 2 dNFi
30 28 216 1 fPn
31 12 51 1 nTq
31 18 58 1 dAt
32 12 51 1 nTq
32 18 58 1 dAt
33 12 51 1 nTq
33 18 58 1 dAt
34 12 51 1 nTq
34 18 58 1 dAt
35 12 51 1 nTq
35 18 58 1 dAt
36 12 51 1 nTq
36 18 58 1 dAt
//