Complet list of 1aml hssp file
Complete list of 1aml.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1AML
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-14
HEADER SERINE PROTEASE INHIBITOR 13-FEB-95 1AML
COMPND MOL_ID: 1; MOLECULE: AMYLOID A4; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR P.ROESCH,H.STICHT
DBREF 1AML A 1 40 UNP P05067 A4_HUMAN 672 711
SEQLENGTH 40
NCHAIN 1 chain(s) in 1AML data set
NALIGN 182
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A4_BOVIN 1.00 1.00 1 40 7 46 40 0 0 59 Q28053 Amyloid beta A4 protein (Fragment) OS=Bos taurus GN=APP PE=3 SV=1
2 : A4_CANFA 1.00 1.00 1 40 7 46 40 0 0 58 Q28280 Amyloid beta A4 protein (Fragment) OS=Canis familiaris GN=APP PE=3 SV=1
3 : A4_CAVPO 1.00 1.00 1 40 672 711 40 0 0 770 Q60495 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=1 SV=2
4 : A4_HUMAN 1ZJD 1.00 1.00 1 40 672 711 40 0 0 770 P05067 Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3
5 : A4_MACFA 1.00 1.00 1 40 672 711 40 0 0 770 P53601 Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3
6 : A4_PANTR 1.00 1.00 1 40 672 711 40 0 0 770 Q5IS80 Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1
7 : A4_PIG 1.00 1.00 1 40 672 711 40 0 0 770 P79307 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2
8 : A4_RABIT 1.00 1.00 1 40 6 45 40 0 0 58 Q28748 Amyloid beta A4 protein (Fragment) OS=Oryctolagus cuniculus GN=APP PE=3 SV=1
9 : A4_SAISC 1.00 1.00 1 40 653 692 40 0 0 751 Q95241 Amyloid beta A4 protein OS=Saimiri sciureus GN=APP PE=2 SV=1
10 : A4_SHEEP 1.00 1.00 1 40 6 45 40 0 0 58 Q28757 Amyloid beta A4 protein (Fragment) OS=Ovis aries GN=APP PE=3 SV=1
11 : A4_URSMA 1.00 1.00 1 40 6 45 40 0 0 57 Q29149 Amyloid beta A4 protein (Fragment) OS=Ursus maritimus GN=APP PE=3 SV=1
12 : B4DGD0_HUMAN 1.00 1.00 1 40 616 655 40 0 0 714 B4DGD0 cDNA FLJ50491, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein) (Cerebral vascularamyloid peptide) (CVAP) (Protease nexin-II) (PN-II)(APPI) (PreA4) OS=Homo sapiens PE=2 SV=1
13 : B4DM00_HUMAN 1.00 1.00 1 40 430 469 40 0 0 528 B4DM00 cDNA FLJ54367, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
14 : B4DMD5_HUMAN 1.00 1.00 1 40 524 563 40 0 0 622 B4DMD5 cDNA FLJ54261, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
15 : B4DQM1_HUMAN 1.00 1.00 1 40 582 621 40 0 0 680 B4DQM1 cDNA FLJ51942, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
16 : B7Z313_HUMAN 1.00 1.00 1 40 180 219 40 0 0 278 B7Z313 cDNA FLJ50525, highly similar to Amyloid beta A4 protein (APP) (ABPP) (Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
17 : D2HDM3_AILME 1.00 1.00 1 40 652 691 40 0 0 750 D2HDM3 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_008804 PE=4 SV=1
18 : E1C440_CHICK 1.00 1.00 1 40 637 676 40 0 0 735 E1C440 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
19 : E9PEV0_HUMAN 1.00 1.00 1 40 562 601 40 0 0 660 E9PEV0 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=4 SV=1
20 : E9PG40_HUMAN 1.00 1.00 1 40 616 655 40 0 0 714 E9PG40 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=4 SV=1
21 : F1P0B2_CHICK 1.00 1.00 1 40 581 620 40 0 0 679 F1P0B2 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
22 : F1P603_CANFA 1.00 1.00 1 40 672 711 40 0 0 770 F1P603 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
23 : F1P606_CANFA 1.00 1.00 1 40 653 692 40 0 0 751 F1P606 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
24 : F1P615_CANFA 1.00 1.00 1 40 616 655 40 0 0 714 F1P615 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
25 : F1PC71_CANFA 1.00 1.00 1 40 597 636 40 0 0 695 F1PC71 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
26 : F6XKR3_HORSE 1.00 1.00 1 40 634 673 40 0 0 732 F6XKR3 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
27 : F6XL78_HORSE 1.00 1.00 1 40 653 692 40 0 0 751 F6XL78 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
28 : F7CLL9_MACMU 1.00 1.00 1 40 541 580 40 0 0 639 F7CLL9 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
29 : F7CLM6_MACMU 1.00 1.00 1 40 597 636 40 0 0 695 F7CLM6 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
30 : F7CLP0_MACMU 1.00 1.00 1 40 672 711 40 0 0 770 F7CLP0 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
31 : F7ELT1_MACMU 1.00 1.00 1 40 654 693 40 0 0 752 F7ELT1 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
32 : F7ELT5_MACMU 1.00 1.00 1 40 653 692 40 0 0 751 F7ELT5 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
33 : F7FJ79_MACMU 1.00 1.00 1 40 616 655 40 0 0 714 F7FJ79 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
34 : G1MFV5_AILME 1.00 1.00 1 40 672 711 40 0 0 770 G1MFV5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=APP PE=4 SV=1
35 : G1NNT9_MELGA 1.00 1.00 1 40 637 676 40 0 0 735 G1NNT9 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=2
36 : G1QQU0_NOMLE 1.00 1.00 1 40 606 645 40 0 0 704 G1QQU0 Uncharacterized protein OS=Nomascus leucogenys GN=APP PE=4 SV=2
37 : G1SZM2_RABIT 1.00 1.00 1 40 671 710 40 0 0 769 G1SZM2 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100009546 PE=4 SV=1
38 : G3QD87_GORGO 1.00 1.00 1 40 672 711 40 0 0 770 G3QD87 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
39 : G3S7J3_GORGO 1.00 1.00 1 40 672 711 40 0 0 770 G3S7J3 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
40 : G3SSG6_LOXAF 1.00 1.00 1 40 653 692 40 0 0 751 G3SSG6 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=LOC100677270 PE=4 SV=1
41 : G3UL78_LOXAF 1.00 1.00 1 40 182 221 40 0 0 280 G3UL78 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=LOC100677270 PE=4 SV=1
42 : G3URW3_MELGA 1.00 1.00 1 40 607 646 40 0 0 705 G3URW3 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
43 : G3USJ4_MELGA 1.00 1.00 1 40 581 620 40 0 0 679 G3USJ4 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
44 : G7MNB1_MACMU 1.00 1.00 1 40 672 711 40 0 0 770 G7MNB1 Alzheimer disease amyloid protein OS=Macaca mulatta GN=APP PE=2 SV=1
45 : G7P1M4_MACFA 1.00 1.00 1 40 431 470 40 0 0 529 G7P1M4 Alzheimer disease amyloid protein (Fragment) OS=Macaca fascicularis GN=EGM_12262 PE=4 SV=1
46 : H0UW66_CAVPO 1.00 1.00 1 40 672 711 40 0 0 770 H0UW66 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
47 : H0VZT1_CAVPO 1.00 1.00 1 40 2 41 40 0 0 43 H0VZT1 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
48 : H0WCQ9_CAVPO 1.00 1.00 1 40 653 692 40 0 0 751 H0WCQ9 Amyloid beta A4 protein (Fragment) OS=Cavia porcellus GN=APP PE=4 SV=1
49 : H0ZTL2_TAEGU 1.00 1.00 1 40 654 693 40 0 0 752 H0ZTL2 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=APP PE=4 SV=1
50 : H7C104_HUMAN 1.00 1.00 1 40 241 280 40 0 0 280 H7C104 Amyloid beta A4 protein (Fragment) OS=Homo sapiens GN=APP PE=4 SV=2
51 : I0FGN2_MACMU 1.00 1.00 1 40 597 636 40 0 0 695 I0FGN2 Amyloid beta A4 protein isoform c OS=Macaca mulatta GN=APP PE=2 SV=1
52 : I0FGN3_MACMU 1.00 1.00 1 40 653 692 40 0 0 751 I0FGN3 Amyloid beta A4 protein isoform b OS=Macaca mulatta GN=APP PE=2 SV=1
53 : I0FRG1_MACMU 1.00 1.00 1 40 671 710 40 0 0 769 I0FRG1 Amyloid beta A4 protein isoform a OS=Macaca mulatta GN=APP PE=2 SV=1
54 : K9IN53_DESRO 1.00 1.00 1 40 579 618 40 0 0 677 K9IN53 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
55 : K9IZI9_DESRO 1.00 1.00 1 40 654 693 40 0 0 752 K9IZI9 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
56 : K9IZK4_DESRO 1.00 1.00 1 40 672 711 40 0 0 770 K9IZK4 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
57 : K9J2F8_DESRO 1.00 1.00 1 40 597 636 40 0 0 695 K9J2F8 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
58 : K9KAU3_HORSE 1.00 1.00 1 40 154 193 40 0 0 252 K9KAU3 Amyloid beta A4 protein-like protein (Fragment) OS=Equus caballus PE=2 SV=1
59 : L5KXN3_PTEAL 1.00 1.00 1 40 650 689 40 0 0 748 L5KXN3 Amyloid beta A4 protein OS=Pteropus alecto GN=PAL_GLEAN10018500 PE=4 SV=1
60 : L5M5V8_MYODS 1.00 1.00 1 40 237 276 40 0 0 335 L5M5V8 Amyloid beta A4 protein OS=Myotis davidii GN=MDA_GLEAN10015941 PE=4 SV=1
61 : L8I4L3_9CETA 1.00 1.00 1 40 625 664 40 0 0 723 L8I4L3 Amyloid beta A4 protein (Fragment) OS=Bos mutus GN=M91_03351 PE=4 SV=1
62 : L9JEB8_TUPCH 1.00 1.00 1 40 627 666 40 0 0 725 L9JEB8 Amyloid beta A4 protein OS=Tupaia chinensis GN=TREES_T100005586 PE=4 SV=1
63 : M1EDY4_MUSPF 1.00 1.00 1 40 308 347 40 0 0 405 M1EDY4 Amyloid beta protein (Fragment) OS=Mustela putorius furo PE=2 SV=1
64 : M3XPJ8_MUSPF 1.00 1.00 1 40 532 571 40 0 0 630 M3XPJ8 Uncharacterized protein OS=Mustela putorius furo GN=APP PE=4 SV=1
65 : O93296_CHICK 1.00 1.00 1 40 436 475 40 0 0 534 O93296 Amyloid protein (Fragment) OS=Gallus gallus PE=2 SV=1
66 : Q08E54_BOVIN 1.00 1.00 1 40 597 636 40 0 0 695 Q08E54 Amyloid beta (A4) protein OS=Bos taurus GN=APP PE=2 SV=1
67 : Q2XQ99_PIG 1.00 1.00 1 40 653 692 40 0 0 751 Q2XQ99 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
68 : Q2XQA0_PIG 1.00 1.00 1 40 597 636 40 0 0 695 Q2XQA0 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
69 : Q4R4R8_MACFA 1.00 1.00 1 40 653 692 40 0 0 751 Q4R4R8 Brain cDNA, clone: QflA-13524, similar to human amyloid beta (A4) protein (protease nexin-II,Alzheimer disease) (APP), transcript variant 2, OS=Macaca fascicularis PE=2 SV=1
70 : Q56JJ6_GRAGR 1.00 1.00 1 40 1 40 40 0 0 42 Q56JJ6 Amyloid beta protein (Fragment) OS=Grampus griseus PE=2 SV=1
71 : Q56JJ7_TURTR 1.00 1.00 1 40 1 40 40 0 0 42 Q56JJ7 Amyloid beta protein (Fragment) OS=Tursiops truncatus PE=2 SV=1
72 : Q56JK2_STECO 1.00 1.00 1 40 651 690 40 0 0 749 Q56JK2 Beta-amyloid protein 749 OS=Stenella coeruleoalba PE=2 SV=1
73 : Q56JK3_CANFA 1.00 1.00 1 40 597 636 40 0 0 695 Q56JK3 Beta-amyloid protein 695 OS=Canis familiaris PE=2 SV=1
74 : Q56JK4_CANFA 1.00 1.00 1 40 616 655 40 0 0 714 Q56JK4 Beta-amyloid protein 714 OS=Canis familiaris PE=2 SV=1
75 : Q56JK5_CANFA 1.00 1.00 1 40 653 692 40 0 0 751 Q56JK5 Beta-amyloid protein 751 OS=Canis familiaris PE=2 SV=1
76 : Q56JK6_CANFA 1.00 1.00 1 40 672 711 40 0 0 770 Q56JK6 Beta-amyloid protein 770 OS=Canis familiaris PE=2 SV=1
77 : Q5R477_PONAB 1.00 1.00 1 40 597 636 40 0 0 695 Q5R477 Putative uncharacterized protein DKFZp459D212 OS=Pongo abelii GN=DKFZp459D212 PE=2 SV=1
78 : Q6RH28_CANFA 1.00 1.00 1 40 653 692 40 0 0 751 Q6RH28 Beta amyloid protein isoform APP751 OS=Canis familiaris GN=beta APP PE=2 SV=1
79 : Q6RH29_CANFA 1.00 1.00 1 40 597 636 40 0 0 695 Q6RH29 Beta amyloid protein isoform APP695 OS=Canis familiaris GN=beta APP PE=2 SV=1
80 : Q6RH30_CANFA 1.00 1.00 1 40 672 711 40 0 0 770 Q6RH30 Beta amyloid protein isoform APP770 OS=Canis familiaris GN=beta APP PE=2 SV=1
81 : Q7M088_CAVPO1Z0Q 1.00 1.00 1 40 1 40 40 0 0 42 Q7M088 Beta-amyloid protein (Fragment) OS=Cavia porcellus PE=1 SV=1
82 : Q8JH58_CHESE 1.00 1.00 1 40 15 54 40 0 0 113 Q8JH58 Amyloid beta protein (Fragment) OS=Chelydra serpentina PE=2 SV=1
83 : Q9DGJ7_CHICK 1.00 1.00 1 40 653 692 40 0 0 751 Q9DGJ7 Beta-amyloid protein 751 isoform OS=Gallus gallus PE=2 SV=1
84 : Q9DGJ8_CHICK 1.00 1.00 1 40 597 636 40 0 0 695 Q9DGJ8 Beta-amyloid protein 695 isoform OS=Gallus gallus PE=2 SV=1
85 : Q9PVL1_CHICK 1.00 1.00 1 40 472 511 40 0 0 569 Q9PVL1 Amyloid protein (Fragment) OS=Gallus gallus GN=APP PE=2 SV=1
86 : S5WHW2_TUPBE 1.00 1.00 1 40 597 636 40 0 0 695 S5WHW2 APP OS=Tupaia belangeri PE=2 SV=1
87 : S7PAA7_MYOBR 1.00 1.00 1 36 701 736 36 0 0 817 S7PAA7 Amyloid beta A4 protein OS=Myotis brandtii GN=D623_10008979 PE=4 SV=1
88 : S9XY19_9CETA 1.00 1.00 1 40 351 390 40 0 0 449 S9XY19 Amyloid beta A4 protein-like isoform 1 OS=Camelus ferus GN=CB1_000876006 PE=4 SV=1
89 : U3BFP5_CALJA 1.00 1.00 1 40 597 636 40 0 0 695 U3BFP5 Amyloid beta A4 protein isoform c OS=Callithrix jacchus GN=APP PE=2 SV=1
90 : U3BYM5_CALJA 1.00 1.00 1 40 653 692 40 0 0 751 U3BYM5 Amyloid beta A4 protein isoform b OS=Callithrix jacchus GN=APP PE=2 SV=1
91 : U3DDZ5_CALJA 1.00 1.00 1 40 654 693 40 0 0 752 U3DDZ5 Amyloid beta A4 protein isoform h OS=Callithrix jacchus GN=APP PE=2 SV=1
92 : U3EFG5_CALJA 1.00 1.00 1 40 672 711 40 0 0 770 U3EFG5 Amyloid beta A4 protein isoform a OS=Callithrix jacchus GN=APP PE=2 SV=1
93 : U3FGW5_CALJA 1.00 1.00 1 40 579 618 40 0 0 677 U3FGW5 Amyloid beta A4 protein isoform j OS=Callithrix jacchus GN=APP PE=2 SV=1
94 : U3FL54_CALJA 1.00 1.00 1 40 635 674 40 0 0 733 U3FL54 Amyloid beta A4 protein isoform i OS=Callithrix jacchus GN=APP PE=2 SV=1
95 : U3IMZ0_ANAPL 1.00 1.00 1 40 109 148 40 0 0 207 U3IMZ0 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
96 : U3IMZ9_ANAPL 1.00 1.00 1 40 255 294 40 0 0 353 U3IMZ9 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
97 : U3KBV2_FICAL 1.00 1.00 1 40 640 679 40 0 0 738 U3KBV2 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=APP PE=4 SV=1
98 : A4_FELCA 0.98 1.00 1 40 1 40 40 0 0 40 P86906 Amyloid beta A4 protein (Fragment) OS=Felis catus GN=APP PE=1 SV=1
99 : B4DJT9_HUMAN 0.98 1.00 1 40 562 601 40 0 0 660 B4DJT9 cDNA FLJ59550, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
100 : E0A3M4_HETGA 0.98 1.00 1 40 19 58 40 0 0 105 E0A3M4 Amyloid beta protein (Fragment) OS=Heterocephalus glaber GN=APP PE=2 SV=1
101 : F6VZ17_CALJA 0.98 1.00 1 40 430 469 40 0 0 528 F6VZ17 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
102 : F6ZWG7_CALJA 0.98 1.00 1 40 672 711 40 0 0 770 F6ZWG7 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
103 : F6ZXB5_CALJA 0.98 1.00 1 40 653 692 40 0 0 751 F6ZXB5 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
104 : F7BG93_CALJA 0.98 1.00 1 40 562 601 40 0 0 660 F7BG93 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
105 : F7BVA8_CALJA 0.98 1.00 1 40 524 563 40 0 0 622 F7BVA8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
106 : F7FDC4_CALJA 0.98 1.00 1 40 616 655 40 0 0 714 F7FDC4 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
107 : F7HVD8_CALJA 0.98 1.00 1 40 582 621 40 0 0 680 F7HVD8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
108 : F7HZ59_CALJA 0.98 1.00 1 40 597 636 40 0 0 695 F7HZ59 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
109 : G1KQA1_ANOCA 0.98 1.00 1 40 678 717 40 0 0 776 G1KQA1 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=APP PE=4 SV=1
110 : G1PHP7_MYOLU 0.98 1.00 1 40 673 712 40 0 0 771 G1PHP7 Uncharacterized protein (Fragment) OS=Myotis lucifugus GN=APP PE=4 SV=1
111 : G5BQQ4_HETGA 0.98 1.00 1 40 653 692 40 0 0 751 G5BQQ4 Amyloid beta A4 protein (Fragment) OS=Heterocephalus glaber GN=GW7_00368 PE=4 SV=1
112 : H2ZW72_LATCH 0.98 1.00 1 40 554 593 40 0 0 652 H2ZW72 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
113 : J3S3Z4_CROAD 0.98 1.00 1 40 652 691 40 0 0 750 J3S3Z4 Amyloid beta A4 protein-like OS=Crotalus adamanteus PE=2 SV=1
114 : T1E6J6_CROHD 0.98 1.00 1 40 652 691 40 0 0 750 T1E6J6 Amyloid beta A4 protein-like protein OS=Crotalus horridus PE=2 SV=1
115 : A4_MOUSE 2YT0 0.93 0.98 1 40 672 711 40 0 0 770 P12023 Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3
116 : A4_RAT 1OQN 0.93 0.98 1 40 672 711 40 0 0 770 P08592 Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2
117 : F6RJV8_MONDO 0.93 0.98 1 40 575 614 40 0 0 673 F6RJV8 Uncharacterized protein OS=Monodelphis domestica GN=APP PE=4 SV=2
118 : G3HMG4_CRIGR 0.93 0.98 1 40 335 374 40 0 0 433 G3HMG4 Amyloid beta A4 protein OS=Cricetulus griseus GN=I79_011926 PE=4 SV=1
119 : G3VGV4_SARHA 0.93 1.00 1 40 652 691 40 0 0 750 G3VGV4 Uncharacterized protein OS=Sarcophilus harrisii GN=APP PE=4 SV=1
120 : G3VGV5_SARHA 0.93 1.00 1 40 651 690 40 0 0 749 G3VGV5 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=APP PE=4 SV=1
121 : O35463_CRIGR 0.93 0.98 1 40 21 60 40 0 0 79 O35463 Alzheimer's amyloid beta protein (Fragment) OS=Cricetulus griseus GN=beta APP PE=2 SV=1
122 : Q3MQ25_ANTST 0.93 1.00 1 40 16 55 40 0 0 64 Q3MQ25 Amyloid beta A4 protein (Fragment) OS=Antechinus stuartii GN=app PE=2 SV=1
123 : Q3TWF3_MOUSE 0.93 0.98 1 40 654 693 40 0 0 752 Q3TWF3 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
124 : Q3TXI9_MOUSE 0.93 0.98 1 40 654 693 40 0 0 752 Q3TXI9 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
125 : Q53ZT3_MOUSE 0.93 0.98 1 40 672 711 40 0 0 770 Q53ZT3 Amyloid-beta protein-like protein long isoform OS=Mus musculus GN=App PE=2 SV=1
126 : Q6GR78_MOUSE 0.93 0.98 1 40 597 636 40 0 0 695 Q6GR78 Amyloid beta (A4) protein OS=Mus musculus GN=App PE=2 SV=1
127 : Q6P6Q5_RAT 0.93 0.98 1 40 635 674 40 0 0 733 Q6P6Q5 App protein OS=Rattus norvegicus GN=App PE=2 SV=1
128 : Q8BPC7_MOUSE 0.93 0.98 1 40 286 325 40 0 0 384 Q8BPC7 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
129 : Q8BPV5_MOUSE 0.93 0.98 1 40 120 159 40 0 0 218 Q8BPV5 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
130 : F7D9N7_XENTR 0.88 1.00 1 40 673 712 40 0 0 771 F7D9N7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=app PE=4 SV=1
131 : G5DY97_9PIPI 0.88 1.00 1 40 120 159 40 0 0 210 G5DY97 Putative beta-amyloid a4 (Fragment) OS=Pipa carvalhoi PE=2 SV=1
132 : Q6DJB6_XENTR 0.88 1.00 1 40 652 691 40 0 0 750 Q6DJB6 Amyloid beta (A4) protein OS=Xenopus tropicalis GN=app PE=2 SV=1
133 : Q6NRR1_XENLA 0.88 1.00 1 40 651 690 40 0 0 749 Q6NRR1 App protein OS=Xenopus laevis GN=app PE=2 SV=1
134 : Q91963_9PIPI 0.88 1.00 1 40 649 688 40 0 0 747 Q91963 APP747 OS=Xenopus GN=APP747 PE=2 SV=1
135 : Q98SG0_XENLA 0.88 1.00 1 40 595 634 40 0 0 693 Q98SG0 Beta-amyloid protein A (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
136 : V8PCH2_OPHHA 0.88 0.93 1 40 637 679 43 1 3 738 V8PCH2 Amyloid beta A4 protein (Fragment) OS=Ophiophagus hannah GN=APP PE=4 SV=1
137 : F1C7C1_PERFV 0.85 0.93 1 40 263 302 40 0 0 361 F1C7C1 Amyloid beta a4 protein (Fragment) OS=Perca flavescens GN=App PE=2 SV=1
138 : M4AC86_XIPMA 0.85 0.93 1 40 598 637 40 0 0 696 M4AC86 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
139 : O57394_NARJA 0.85 0.98 1 40 601 640 40 0 0 699 O57394 EL amyloid protein 699 OS=Narke japonica GN=el app699 PE=2 SV=1
140 : Q7ZXQ0_XENLA 0.85 1.00 1 40 597 636 40 0 0 695 Q7ZXQ0 MGC52816 protein OS=Xenopus laevis GN=MGC52816 PE=2 SV=1
141 : Q98SF9_XENLA 0.85 1.00 1 40 597 636 40 0 0 695 Q98SF9 Beta-amyloid protein B (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
142 : A4_TETFL 0.82 0.93 1 40 682 721 40 0 0 780 O73683 Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1
143 : G3NGM2_GASAC 0.82 0.93 1 40 651 690 40 0 0 749 G3NGM2 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
144 : G3PQL0_GASAC 0.82 0.93 1 40 689 728 40 0 0 787 G3PQL0 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
145 : H2TNW1_TAKRU 0.82 0.93 1 40 666 705 40 0 0 764 H2TNW1 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
146 : H2TNW2_TAKRU 0.82 0.93 1 40 644 683 40 0 0 742 H2TNW2 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
147 : H2TNW3_TAKRU 0.82 0.93 1 40 596 635 40 0 0 694 H2TNW3 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
148 : H3C1S2_TETNG 0.82 0.93 1 40 574 613 40 0 0 672 H3C1S2 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
149 : H3C327_TETNG 0.82 0.93 1 40 672 711 40 0 0 770 H3C327 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
150 : H3DAM0_TETNG 0.82 0.93 1 40 630 669 40 0 0 728 H3DAM0 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
151 : Q4RY33_TETNG 0.82 0.93 1 40 656 695 40 0 0 754 Q4RY33 Chromosome 3 SCAF14978, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00027170001 PE=4 SV=1
152 : I3K2G0_ORENI 0.80 0.93 1 40 686 725 40 0 0 784 I3K2G0 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
153 : I3K2G1_ORENI 0.80 0.93 1 40 678 717 40 0 0 776 I3K2G1 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
154 : M4AE25_XIPMA 0.80 0.93 1 40 609 648 40 0 0 707 M4AE25 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
155 : A4_TAKRU 0.77 0.93 1 40 639 678 40 0 0 737 O93279 Amyloid beta A4 protein OS=Takifugu rubripes GN=app PE=3 SV=1
156 : H2LJY4_ORYLA 0.77 0.90 1 40 676 715 40 0 0 742 H2LJY4 Uncharacterized protein (Fragment) OS=Oryzias latipes PE=4 SV=1
157 : H2TSC9_TAKRU 0.77 0.93 1 40 651 690 40 0 0 749 H2TSC9 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
158 : H2TSD0_TAKRU 0.77 0.93 1 40 637 676 40 0 0 735 H2TSD0 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
159 : H2TSD1_TAKRU 0.77 0.93 1 40 595 634 40 0 0 693 H2TSD1 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
160 : H2TSD2_TAKRU 0.77 0.93 1 40 264 303 40 0 0 362 H2TSD2 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
161 : H3BXB8_TETNG 0.77 0.93 1 40 640 679 40 0 0 738 H3BXB8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
162 : H3BYK8_TETNG 0.77 0.93 1 40 652 691 40 0 0 750 H3BYK8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
163 : H3D8S6_TETNG 0.77 0.93 1 40 658 697 40 0 0 756 H3D8S6 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
164 : Q4S0J4_TETNG 0.77 0.93 1 40 661 700 40 0 0 759 Q4S0J4 Chromosome 2 SCAF14781, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00025991001 PE=4 SV=1
165 : Q9I9E7_DANRE 0.77 0.82 1 40 517 553 40 1 3 612 Q9I9E7 Amyloid protein (Fragment) OS=Danio rerio GN=appa PE=2 SV=1
166 : I3KA26_ORENI 0.75 0.90 1 40 595 634 40 0 0 693 I3KA26 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
167 : I3KA27_ORENI 0.75 0.90 1 40 652 691 40 0 0 750 I3KA27 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
168 : B0V0E4_DANRE 0.70 0.95 1 40 596 635 40 0 0 694 B0V0E4 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
169 : B0V0E5_DANRE 0.70 0.95 1 40 653 692 40 0 0 751 B0V0E5 Uncharacterized protein OS=Danio rerio GN=appb PE=1 SV=1
170 : F1R8S2_DANRE 0.70 0.95 1 40 264 303 40 0 0 362 F1R8S2 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
171 : F1RC40_DANRE 0.70 0.95 1 40 264 303 40 0 0 362 F1RC40 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
172 : I6Z1P1_DANRE 0.70 0.95 1 40 596 635 40 0 0 694 I6Z1P1 Amyloid beta protein b OS=Danio rerio GN=appb PE=2 SV=1
173 : Q5XIY5_DANRE 0.70 0.95 1 40 264 303 40 0 0 362 Q5XIY5 Appb protein OS=Danio rerio GN=appb PE=2 SV=1
174 : Q8UUI7_DANRE 0.70 0.95 1 40 141 180 40 0 0 239 Q8UUI7 Putative membrane protein (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
175 : Q8UUR9_DANRE 0.70 0.95 1 40 596 635 40 0 0 694 Q8UUR9 Putative membrane protein OS=Danio rerio GN=appb PE=2 SV=1
176 : H2LYH0_ORYLA 0.69 0.92 5 40 655 690 36 0 0 749 H2LYH0 Uncharacterized protein OS=Oryzias latipes GN=LOC101172288 PE=4 SV=1
177 : B0CM02_DANRE 0.68 0.95 1 38 596 633 38 0 0 666 B0CM02 Appb (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
178 : F1QKA6_DANRE 0.65 0.92 1 37 596 632 37 0 0 660 F1QKA6 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
179 : H2P2T9_PONAB 0.63 0.76 3 40 641 677 38 1 1 736 H2P2T9 Uncharacterized protein OS=Pongo abelii GN=APP PE=4 SV=1
180 : I3MC24_SPETR 0.56 0.74 1 34 670 703 34 0 0 767 I3MC24 Uncharacterized protein (Fragment) OS=Spermophilus tridecemlineatus GN=APP PE=4 SV=1
181 : H2TNW0_TAKRU 0.52 0.68 1 40 653 691 40 1 1 750 H2TNW0 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
182 : H2TNW4_TAKRU 0.52 0.65 1 40 516 552 40 1 3 610 H2TNW4 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 207 181 19 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 2 A A - 0 0 59 181 69 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 3 A E + 0 0 115 182 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A F S S- 0 0 175 182 101 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
5 5 A R S S+ 0 0 192 183 24 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 6 A H + 0 0 150 183 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
7 7 A D + 0 0 105 183 60 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
8 8 A S S S- 0 0 106 183 62 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A G S S+ 0 0 61 183 29 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
10 10 A Y + 0 0 132 183 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
11 11 A E + 0 0 74 182 17 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A V S S- 0 0 100 182 10 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
13 13 A H S > S+ 0 0 116 182 59 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
14 14 A H H > S+ 0 0 117 183 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
15 15 A Q H >>S+ 0 0 46 183 36 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
16 16 A K H >5S+ 0 0 129 183 21 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
17 17 A L H X5S+ 0 0 51 180 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
18 18 A V H X5S+ 0 0 60 182 22 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
19 19 A F H X5S+ 0 0 128 182 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
20 20 A F H >XX S+ 0 0 62 183 9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22 22 A E H 3< S+ 0 0 131 183 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
23 23 A D H << S+ 0 0 142 183 13 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
24 24 A V H << S- 0 0 40 183 22 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 25 A G S < S- 0 0 59 183 10 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
26 26 A S S S+ 0 0 113 183 5 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
27 27 A N S S- 0 0 132 183 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
28 28 A K + 0 0 154 183 3 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
29 29 A G - 0 0 36 183 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A S S+ 0 0 58 183 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31 31 A I S >> S+ 0 0 95 183 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
32 32 A I H 3> S+ 0 0 78 183 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
33 33 A G H 34 S+ 0 0 12 183 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34 34 A L H X4 S+ 0 0 126 183 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M H ><>S+ 0 0 113 182 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
36 36 A V T 3<5S+ 0 0 83 182 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
37 37 A G T < 5S+ 0 0 67 181 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
38 38 A G T < 5S- 0 0 74 180 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
39 39 A V T 5 0 0 139 179 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
40 40 A V < 0 0 136 179 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A D 0 0 207 181 19 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDED
2 2 A A - 0 0 59 181 69 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAASSSSSSATTTS
3 3 A E + 0 0 115 182 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A F S S- 0 0 175 182 101 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYFFFYYFFFFFFFFFFFFFFFYYYYYYYEEFY
5 5 A R S S+ 0 0 192 183 24 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRGGRGRRGRGGGGGGGRRRRRRRRRQR
6 6 A H + 0 0 150 183 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQQQH
7 7 A D + 0 0 105 183 60 DDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDSSDD
8 8 A S S S- 0 0 106 183 62 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAAATTTSTASA
9 9 A G S S+ 0 0 61 183 29 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGASAAAAGEGGA
10 10 A Y + 0 0 132 183 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFYFYYFYFFFFFFFYYYYYYYYYYY
11 11 A E + 0 0 74 182 17 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A V S S- 0 0 100 182 10 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
13 13 A H S > S+ 0 0 116 182 59 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHRHHHHHHHHHHRHHHRRHRHHRHRRRRRRRHHHHHHHHYHH
14 14 A H H > S+ 0 0 117 183 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
15 15 A Q H >>S+ 0 0 46 183 36 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
16 16 A K H >5S+ 0 0 129 183 21 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKkKKKK
17 17 A L H X5S+ 0 0 51 180 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLvLLLL
18 18 A V H X5S+ 0 0 60 182 22 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
19 19 A F H X5S+ 0 0 128 182 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
20 20 A F H >XX S+ 0 0 62 183 9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPA
22 22 A E H 3< S+ 0 0 131 183 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKD
23 23 A D H << S+ 0 0 142 183 13 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDHHHHHHHHDDDDDDDDDDDDDDDDDDDDDEEEEEEDDDDE
24 24 A V H << S- 0 0 40 183 22 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMVMMVMVVVVVVVVVVVVVVVVVV
25 25 A G S < S- 0 0 59 183 10 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGSSGSGGGGGGGGGGGGGGGGGG
26 26 A S S S+ 0 0 113 183 5 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
27 27 A N S S- 0 0 132 183 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
28 28 A K + 0 0 154 183 3 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
29 29 A G - 0 0 36 183 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A S S+ 0 0 58 183 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31 31 A I S >> S+ 0 0 95 183 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
32 32 A I H 3> S+ 0 0 78 183 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
33 33 A G H 34 S+ 0 0 12 183 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34 34 A L H X4 S+ 0 0 126 183 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M H ><>S+ 0 0 113 182 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
36 36 A V T 3<5S+ 0 0 83 182 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
37 37 A G T < 5S+ 0 0 67 181 0 GGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
38 38 A G T < 5S- 0 0 74 180 0 GGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
39 39 A V T 5 0 0 139 179 1 VVVVVVVVVVVVVVVV VVVVVVVVVVVVVVVVVVVVVVVVIVVVVIVIIVIVVVVVVVVVVVVVVVVVV
40 40 A V < 0 0 136 179 0 VVVVVVVVVVVVVVVV VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
## ALIGNMENTS 141 - 182
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A D 0 0 207 181 19 DEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDDDD DD DGG
2 2 A A - 0 0 59 181 69 STSTTTTTTTTTTTTTTTTTTTTTATTIIIIIIII II AVV
3 3 A E + 0 0 115 182 12 EEEEEEEEEEEEEEDDDDDDDDDDEEEEEEEEEEE EEDEGG
4 4 A F S S- 0 0 175 182 101 YDENDDDDDDDDDDKNKKKKEEEEEEEEEEEEEEE EEAFFF
5 5 A R S S+ 0 0 192 183 24 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRII
6 6 A H + 0 0 150 183 27 HQQQQQQQQQQQQQQQQQQQQQQQHQQHHHHHHHHQHHPHHH
7 7 A D + 0 0 105 183 60 DSSSSSSSSSSSSSSSSSSSSSSSSSSNNNNNNNNSNNADPP
8 8 A S S S- 0 0 106 183 62 ATATTTTTTTTTTTAAAAAAAAAAEAAAAAAAAAAAAAASEE
9 9 A G S S+ 0 0 61 183 29 AEGEEEEEEEEEEEGEGGGGGGGGVGGGGGGGGGGSGGDGSS
10 10 A Y + 0 0 132 183 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYYRFFF
11 11 A E + 0 0 74 182 17 EEEEEEEEEEEEEEEAEEEEEEEE.EEDDDDDDDDEDDGENN
12 12 A V S S- 0 0 100 182 10 VVVVVVVVVVVVVVVVVVVVVVVV.VVVVVVVVVVVVVLVQQ
13 13 A H S > S+ 0 0 116 182 59 HHYHHHHHHHHRRHYHYYYYYYYY.YYRRRRRRRRYRRTRLL
14 14 A H H > S+ 0 0 117 183 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHDDDDDDDDHDDTHNN
15 15 A Q H >>S+ 0 0 46 183 36 QQQQQQQQQQQQQQQQQQQQEEEEQEEKKKKKKKKEKKRQTT
16 16 A K H >5S+ 0 0 129 183 21 KKKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRRRRKRRPKDD
17 17 A L H X5S+ 0 0 51 180 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLRLL.L..
18 18 A V H X5S+ 0 0 60 182 22 VVVVVVVVVVVVVVVVVVVVVVVVVVVMMMMMMMMVMMVIN.
19 19 A F H X5S+ 0 0 128 182 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFFFQ.
20 20 A F H >XX S+ 0 0 62 183 9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAASAQ
22 22 A E H 3< S+ 0 0 131 183 12 DEEEEEEEEEEEEEDEDDDDEEEEEDDEEEEEEEEEEEEKNE
23 23 A D H << S+ 0 0 142 183 13 EDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDIDD
24 24 A V H << S- 0 0 40 183 22 VVVVVVVVVVVVVVVVVVVVVVVVVAAMMMMMMMMVMMVIVV
25 25 A G S < S- 0 0 59 183 10 GGGGGGGGGGGGGSGGGGGGGGGGSGGGGGGGGGGGGGGFGG
26 26 A S S S+ 0 0 113 183 5 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSLSS
27 27 A N S S- 0 0 132 183 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
28 28 A K + 0 0 154 183 3 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKPKK
29 29 A G - 0 0 36 183 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A S S+ 0 0 58 183 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIAA
31 31 A I S >> S+ 0 0 95 183 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILII
32 32 A I H 3> S+ 0 0 78 183 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIQII
33 33 A G H 34 S+ 0 0 12 183 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGG
34 34 A L H X4 S+ 0 0 126 183 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M H ><>S+ 0 0 113 182 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MM
36 36 A V T 3<5S+ 0 0 83 182 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVGV VV
37 37 A G T < 5S+ 0 0 67 181 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GG
38 38 A G T < 5S- 0 0 74 180 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG G GG
39 39 A V T 5 0 0 139 179 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV V VV
40 40 A V < 0 0 136 179 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV V VV
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 15 0 84 181 0 0 0.480 16 0.80
2 2 A 1 0 6 0 0 0 0 0 73 0 5 15 0 0 0 0 0 0 0 0 181 0 0 0.878 29 0.30
3 3 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 93 0 6 182 0 0 0.288 9 0.87
4 4 A 0 0 0 0 72 0 7 0 1 0 0 0 0 0 0 3 0 11 1 6 182 0 0 1.005 33 -0.02
5 5 A 0 0 1 0 0 0 0 6 0 0 0 0 0 0 92 0 1 0 0 0 183 0 0 0.320 10 0.75
6 6 A 0 0 0 0 0 0 0 0 0 1 0 0 0 84 0 0 16 0 0 0 183 0 0 0.470 15 0.72
7 7 A 0 0 0 0 0 0 0 0 1 1 16 0 0 0 0 0 0 1 5 77 183 0 0 0.762 25 0.40
8 8 A 0 0 0 0 0 0 0 0 17 1 72 9 0 0 0 0 0 2 0 0 183 0 0 0.845 28 0.38
9 9 A 1 0 0 0 0 0 0 85 4 0 2 0 0 0 0 0 0 8 0 1 183 0 0 0.598 19 0.71
10 10 A 0 0 0 0 8 0 91 0 0 0 0 0 0 0 1 0 0 0 0 0 183 1 0 0.317 10 0.94
11 11 A 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 92 1 5 182 0 0 0.340 11 0.83
12 12 A 98 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 182 0 0 0.095 3 0.90
13 13 A 0 1 0 0 0 0 8 0 0 0 0 1 0 76 14 0 0 0 0 0 182 0 0 0.759 25 0.40
14 14 A 0 0 0 0 0 0 0 0 0 0 0 1 0 93 0 0 0 0 1 5 183 0 0 0.305 10 0.73
15 15 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 5 89 4 0 0 183 0 0 0.465 15 0.64
16 16 A 0 0 0 0 0 0 0 0 0 1 0 0 0 0 5 93 0 0 0 1 183 3 1 0.305 10 0.79
17 17 A 1 99 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 180 0 0 0.069 2 0.96
18 18 A 93 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 182 0 0 0.280 9 0.78
19 19 A 0 1 0 0 99 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 182 0 0 0.068 2 0.93
20 20 A 0 6 0 0 92 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 183 0 0 0.328 10 0.78
21 21 A 0 0 0 0 0 0 0 0 98 1 1 0 0 0 0 0 1 0 0 0 183 0 0 0.128 4 0.91
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 93 1 5 183 0 0 0.289 9 0.87
23 23 A 0 0 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 91 183 0 0 0.391 13 0.87
24 24 A 91 0 1 8 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 183 0 0 0.363 12 0.78
25 25 A 0 0 0 0 1 0 0 96 0 0 3 0 0 0 0 0 0 0 1 0 183 0 0 0.193 6 0.89
26 26 A 0 1 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 183 0 0 0.034 1 0.95
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 183 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 183 0 0 0.034 1 0.96
29 29 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 183 0 0 0.000 0 1.00
30 30 A 0 0 1 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 183 0 0 0.034 1 0.96
31 31 A 0 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183 0 0 0.034 1 0.98
32 32 A 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 183 0 0 0.034 1 0.95
33 33 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 1 0 183 0 0 0.034 1 0.97
34 34 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183 0 0 0.000 0 1.00
35 35 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 182 0 0 0.000 0 1.00
36 36 A 99 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 182 0 0 0.034 1 0.97
37 37 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 181 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 180 0 0 0.000 0 1.00
39 39 A 97 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 179 0 0 0.127 4 0.98
40 40 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 179 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
136 17 653 3 kLASv
//