Complet list of 1ag7 hssp file
Complete list of 1ag7.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1AG7
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-27
HEADER NEUROTOXIN 03-APR-97 1AG7
COMPND MOL_ID: 1; MOLECULE: CONOTOXIN GS; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CONUS GEOGRAPHUS; ORGANISM_COMMON: GEO
AUTHOR J.M.HILL,P.F.ALEWOOD,D.J.CRAIK
DBREF 1AG7 A 1 34 UNP P15472 CXGS_CONGE 1 34
SEQLENGTH 34
NCHAIN 1 chain(s) in 1AG7 data set
NALIGN 2
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CGS_CONGE 1AG7 0.91 0.91 1 34 1 34 34 0 0 34 P15472 Mu-conotoxin GS OS=Conus geographus PE=1 SV=1
2 : C7A_CONTU 1EYO 0.52 0.70 1 33 1 30 33 1 3 30 P58923 Conotoxin TVIIA OS=Conus tulipa PE=1 SV=1
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 130 3 66 AS
2 2 A a - 0 0 66 3 0 CC
3 3 A S B -a 13 0A 3 3 0 SS
4 4 A G > - 0 0 31 3 0 GG
5 5 A R T 3 S+ 0 0 177 3 0 RR
6 6 A G T 3 S+ 0 0 50 3 48 GD
7 7 A S S < S- 0 0 52 3 0 SS
8 8 A R - 0 0 112 3 0 RR
9 9 A b S S+ 0 0 41 3 0 CC
10 10 A X S S+ 0 0 127 2 0 PP
11 11 A X S S- 0 0 85 2 0 PP
12 12 A Q - 0 0 156 3 102 QV
13 13 A c B -a 3 0A 25 3 0 CC
14 14 A a > - 0 0 41 3 0 CC
15 15 A M T 3 S+ 0 0 194 3 0 MM
16 16 A G T 3 S+ 0 0 43 3 0 GG
17 17 A L E < -B 29 0B 42 3 0 LL
18 18 A R E -B 28 0B 116 3 78 RM
19 19 A b E -B 27 0B 50 3 0 CC
20 20 A G E -B 26 0B 15 3 54 GS
21 21 A R + 0 0 190 3 0 RR
22 22 A G S S- 0 0 19 3 0 GG
23 23 A N S S+ 0 0 154 2 0 N.
24 24 A P S S- 0 0 110 2 0 P.
25 25 A Q + 0 0 80 2 0 Q.
26 26 A K E -B 20 0B 109 3 0 KK
27 27 A c E +B 19 0B 0 3 0 CC
28 28 A I E -B 18 0B 45 3 24 IV
29 29 A G E > -B 17 0B 8 3 54 GS
30 30 A A T 3 S+ 0 0 47 3 90 AI
31 31 A H T 3 S+ 0 0 175 3 72 HY
32 32 A X < + 0 0 66 2 66 EG
33 33 A D 0 0 125 3 30 DE
34 34 A V 0 0 183 2 0 V
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 67 0 33 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.34
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 0 0 33 3 0 0 0.637 21 0.52
7 7 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
12 12 A 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 0 3 0 0 0.637 21 -0.02
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
15 15 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
17 17 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
18 18 A 0 0 0 33 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 3 0 0 0.637 21 0.22
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.46
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
28 28 A 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.76
29 29 A 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.46
30 30 A 0 0 33 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.10
31 31 A 0 0 0 0 0 0 33 0 0 0 0 0 0 67 0 0 0 0 0 0 3 0 0 0.637 21 0.28
32 32 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 23 0.33
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 67 3 0 0 0.637 21 0.70
34 34 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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